Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 1.7e-137 492.7 242 100.0
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 5.2e-115 417.9 232 85.3
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 6.6e-110 401.0 226 82.3
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 6.6e-110 401.0 226 82.3
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 3.3e-109 398.7 232 82.3
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 1.8e-107 392.9 234 80.8
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 1.8e-107 392.9 234 81.2
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.3e-107 392.5 234 82.1
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 8.9e-107 390.6 234 80.8
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 1.2e-106 390.2 234 79.9
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 1.5e-106 389.8 226 80.5
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 2.6e-106 389.0 234 80.8
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 3.4e-106 388.7 226 80.5
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 3.4e-106 388.7 228 79.8
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 3.4e-106 388.7 233 79.4
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 7.5e-106 387.5 232 79.7
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 9.8e-106 387.1 232 80.2
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 1.7e-105 386.3 232 80.6
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 2.2e-105 386.0 230 78.7
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 3.7e-105 385.2 235 77.9
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 6.4e-105 384.4 226 79.6
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 6.4e-105 384.4 233 78.1
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 1.1e-104 383.6 233 77.7
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 1.1e-104 383.6 228 79.8
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 1.1e-104 383.6 233 77.3
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 2.4e-104 382.5 255 74.1
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 2.4e-104 382.5 226 77.9
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 2.4e-104 382.5 226 77.9
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 3.2e-104 382.1 231 77.1
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 4.1e-104 381.7 225 77.8
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 7.1e-104 380.9 232 80.6
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 7.1e-104 380.9 232 79.3
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 9.2e-104 380.6 234 76.9
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 1.2e-103 380.2 233 77.7
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 3.5e-103 378.6 226 80.5
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 3.5e-103 378.6 226 80.5
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 4.6e-103 378.3 226 77.9
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 2.3e-102 375.9 249 76.3
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 2.3e-102 375.9 225 78.7
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.0e-102 375.6 249 74.7
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 3.9e-102 375.2 233 76.8
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 5.1e-102 374.8 233 78.5
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.6e-102 374.4 249 75.1
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 8.6e-102 374.0 232 76.3
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 1.5e-101 373.2 233 77.3
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 1.5e-101 373.2 226 77.4
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 7.3e-101 370.9 235 74.5
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.6e-100 369.8 230 74.8
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 2.8e-100 369.0 229 76.0
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.1e-99 367.1 226 77.4
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 1.4e-99 366.7 233 75.5
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 1.4e-99 366.7 233 74.7
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 1.8e-99 366.3 232 75.0
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 1.8e-99 366.3 233 77.7
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 4.0e-99 365.2 232 75.4
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 4.0e-99 365.2 229 74.7
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 8.9e-99 364.0 226 76.5
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 9.9e-98 360.5 234 74.8
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 2.2e-97 359.4 231 72.3
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 2.2e-97 359.4 236 77.5
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 2.2e-97 359.4 236 77.5
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 1.1e-96 357.1 234 74.4
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 1.1e-96 357.1 237 72.6
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 4.1e-96 355.1 233 72.5
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 5.4e-96 354.8 234 73.5
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 9.2e-96 354.0 234 72.6
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 9.2e-96 354.0 230 74.3
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 1.6e-95 353.2 232 71.1
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 1.6e-95 353.2 232 71.1
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 1.6e-95 353.2 230 72.6
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 2.1e-95 352.8 232 73.3
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 2.1e-95 352.8 233 73.8
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 2.7e-95 352.4 215 77.7
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 3.5e-95 352.1 232 71.1
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 4.6e-95 351.7 233 70.4
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 6.0e-95 351.3 233 73.8
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 6.0e-95 351.3 233 73.4
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 7.8e-95 350.9 232 73.7
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 1.7e-94 349.7 230 71.7
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 2.3e-94 349.4 238 70.6
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 2.3e-94 349.4 235 72.3
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 2.3e-94 349.4 235 72.3
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 2.3e-94 349.4 236 75.8
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 2.3e-94 349.4 233 70.8
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 6.6e-94 347.8 233 73.4
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 8.6e-94 347.4 241 67.6
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 1.1e-93 347.1 234 70.5
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 1.5e-93 346.7 236 70.3
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 1.9e-93 346.3 226 73.9
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 2.5e-93 345.9 233 70.0
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 4.3e-93 345.1 221 71.0
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 5.6e-93 344.7 232 72.8
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 9.6e-93 344.0 236 69.9
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 1.2e-92 343.6 231 71.4
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 1.1e-91 340.5 236 69.1
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 1.1e-91 340.5 236 69.1
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 1.4e-91 340.1 235 68.5
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 1.8e-91 339.7 232 71.1
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 2.4e-91 339.3 230 68.3
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 2.4e-91 339.3 230 68.3
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 3.1e-91 339.0 236 69.1
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 5.2e-91 338.2 236 69.9
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 8.9e-91 337.4 231 71.0
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 2.0e-90 336.3 238 70.2
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 2.6e-90 335.9 226 73.0
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 1.7e-89 333.2 233 68.2
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 1.7e-89 333.2 236 69.9
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 3.8e-89 332.0 231 68.0
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 1.2e-87 327.0 234 69.2
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 2.7e-87 325.9 241 64.7
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 3.5e-87 325.5 246 65.9
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 3.5e-87 325.5 279 59.1
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 1.3e-86 323.6 234 67.1
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 2.3e-86 322.8 233 67.0
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 3.0e-86 322.4 240 66.2
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 3.0e-86 322.4 241 63.5
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 3.9e-86 322.0 233 68.2
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 6.6e-86 321.2 236 65.7
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 2.1e-84 316.2 242 64.9
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 6.4e-81 304.7 185 77.8
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 6.4e-81 304.7 220 65.9
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.4e-81 304.7 189 79.4
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 1.1e-80 303.9 226 67.7
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 1.4e-80 303.5 237 63.7
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 8.7e-78 294.3 180 76.7
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 7.3e-77 291.2 232 63.4
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 8.1e-76 287.7 237 63.7
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 4.5e-74 282.0 212 62.7
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 1.5e-69 266.9 221 61.5
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 4.5e-66 255.4 162 74.7
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 5.8e-66 255.0 193 66.8
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 7.6e-66 254.6 224 54.0
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 1.2e-63 247.3 159 72.3
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 5.7e-61 238.4 190 64.7
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 1.3e-60 237.3 157 67.5
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 6.5e-57 224.9 232 51.7
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 8.4e-57 224.6 225 49.8
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 1.9e-56 223.4 145 76.6
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 1.9e-53 213.4 212 51.4
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 7.4e-53 211.5 186 58.6
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 9.7e-53 211.1 212 50.9
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 9.7e-53 211.1 173 60.7
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 3.2e-48 196.1 120 73.3
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 1.4e-43 180.6 134 60.4
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 4.1e-43 179.1 225 48.9
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 2.5e-40 169.9 209 43.1
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 7.4e-37 158.3 92 81.5
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 2.8e-36 156.4 158 53.2
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 1.8e-35 153.7 152 50.0
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 2.0e-34 150.2 99 65.7
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 6.1e-31 138.7 209 39.7
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 1.1e-27 127.9 105 62.9
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 5.5e-24 115.5 75 82.7
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.0e-22 111.3 76 78.9
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 1.8e-22 110.5 95 63.2
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.0e-22 109.8 75 80.0
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 4.0e-22 109.4 90 58.9
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.0e-22 109.4 76 77.6
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 2.2e-20 103.6 67 74.6
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 3.7e-20 102.8 68 76.5
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 3.7e-20 102.8 193 29.0
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 2.7e-18 96.7 74 67.6
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 1.0e-17 94.7 124 41.9
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.5e-16 90.1 64 71.9
Cre03.g193550 Chlamydomonas reinhardtii HOM05D004213 ORTHO05D005091 9.4e-16 88.2 231 29.9
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 9.8e-13 78.2 54 79.6
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 3.7e-12 76.3 53 81.1
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 1.2e-10 71.2 141 32.6
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 2.3e-09 67.0 40 72.5
RcHm_v2.0_Chr1g0366151 Rosa chinensis HOM05D004213 ORTHO05D005091 2.5e-08 63.5 40 72.5
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 5.6e-08 62.4 53 66.0
PGSC0003DMG401011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 2.8e-07 60.1 53 62.3


User provided reference genes

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