Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 4.3e-72 275.8 327 100.0
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 5.3e-62 242.3 327 94.2
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 2.0e-61 240.4 327 93.9
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 2.6e-61 240.0 325 93.5
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 5.8e-61 238.8 327 91.4
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.2e-60 236.9 322 92.2
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 2.5e-59 233.4 322 92.9
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 7.1e-59 231.9 321 93.1
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.2e-58 231.1 321 93.1
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.6e-58 230.7 327 90.8
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 2.1e-58 230.3 327 92.4
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 4.6e-58 229.2 327 91.4
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 4.6e-58 229.2 320 94.4
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 7.9e-58 228.4 321 92.5
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 1.0e-57 228.0 327 91.4
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 1.0e-57 228.0 319 92.5
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.3e-57 227.6 327 90.5
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 1.8e-57 227.3 331 90.6
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 2.3e-57 226.9 327 91.1
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 3.0e-57 226.5 327 91.1
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 3.9e-57 226.1 319 94.4
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 3.9e-57 226.1 327 91.1
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 5.1e-57 225.7 320 93.8
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 6.7e-57 225.3 327 89.6
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 6.7e-57 225.3 323 92.9
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 8.7e-57 224.9 318 94.7
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 8.7e-57 224.9 319 91.5
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 8.7e-57 224.9 322 93.2
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 8.7e-57 224.9 322 91.3
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.1e-56 224.6 320 92.2
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 1.1e-56 224.6 327 90.8
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.1e-56 224.6 318 94.3
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 1.1e-56 224.6 322 93.8
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 1.1e-56 224.6 325 87.7
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 1.5e-56 224.2 329 91.5
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.5e-56 224.2 316 90.8
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 1.5e-56 224.2 321 93.8
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 1.5e-56 224.2 321 93.8
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 1.9e-56 223.8 327 90.8
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 1.9e-56 223.8 321 93.1
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 1.9e-56 223.8 320 94.4
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 1.9e-56 223.8 319 93.1
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 2.5e-56 223.4 321 92.8
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 3.3e-56 223.0 331 89.1
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 5.7e-56 222.2 327 90.5
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 5.7e-56 222.2 327 90.5
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 5.7e-56 222.2 329 91.2
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 5.7e-56 222.2 321 93.8
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 5.7e-56 222.2 323 92.6
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 7.4e-56 221.9 327 90.8
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 7.4e-56 221.9 323 92.6
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 1.6e-55 220.7 322 91.0
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.6e-55 220.7 321 88.8
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 2.2e-55 220.3 322 93.2
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 2.2e-55 220.3 323 91.0
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 4.8e-55 219.2 323 92.0
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 6.3e-55 218.8 320 91.6
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 6.3e-55 218.8 318 92.8
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 8.2e-55 218.4 322 90.7
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 1.1e-54 218.0 323 90.7
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 1.1e-54 218.0 318 91.5
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 1.1e-54 218.0 322 90.4
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 1.8e-54 217.2 321 91.3
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 1.8e-54 217.2 317 92.1
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 2.4e-54 216.9 321 91.3
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 3.1e-54 216.5 322 92.2
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 5.3e-54 215.7 336 77.1
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 5.3e-54 215.7 325 91.7
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 6.9e-54 215.3 318 83.3
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 9.0e-54 214.9 321 89.1
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 9.0e-54 214.9 321 91.0
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 1.2e-53 214.5 322 92.5
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 1.2e-53 214.5 322 92.5
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 1.2e-53 214.5 323 92.0
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 1.2e-53 214.5 312 93.9
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 1.2e-53 214.5 318 88.1
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 1.5e-53 214.2 312 93.6
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 2.0e-53 213.8 322 91.0
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 2.0e-53 213.8 322 91.0
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 2.0e-53 213.8 323 91.3
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 2.6e-53 213.4 323 92.0
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 3.4e-53 213.0 319 91.8
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 5.9e-53 212.2 329 90.0
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 7.7e-53 211.8 343 74.1
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 1.3e-52 211.1 323 91.0
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 1.7e-52 210.7 316 77.8
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 1.7e-52 210.7 319 92.5
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 1.7e-52 210.7 342 62.9
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 2.2e-52 210.3 323 88.9
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 2.2e-52 210.3 362 69.3
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 3.8e-52 209.5 325 89.2
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 8.5e-52 208.4 325 87.7
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 1.1e-51 208.0 297 95.3
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 1.4e-51 207.6 311 92.0
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 1.9e-51 207.2 319 90.0
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 2.5e-51 206.8 324 88.6
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 3.2e-51 206.5 332 89.2
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.2e-51 206.5 325 82.8
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.2e-51 206.5 325 82.8
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 4.2e-51 206.1 327 90.2
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 9.4e-51 204.9 325 89.2
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 1.2e-50 204.5 331 88.5
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.2e-50 204.5 325 89.2
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 1.2e-50 204.5 321 91.6
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 1.6e-50 204.1 313 92.3
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 1.6e-50 204.1 340 73.2
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 3.6e-50 203.0 322 90.1
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 4.6e-50 202.6 318 90.9
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.4e-49 201.1 346 65.3
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 1.8e-49 200.7 366 65.8
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 1.8e-49 200.7 242 90.5
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 2.3e-49 200.3 338 79.3
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 1.5e-48 197.6 296 92.6
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 5.7e-48 195.7 237 89.0
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 2.8e-47 193.4 322 87.3
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 2.8e-47 193.4 313 88.2
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 1.1e-46 191.4 319 88.1
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.8e-46 190.7 339 86.1
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 4.1e-46 189.5 320 87.8
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 5.3e-46 189.1 318 86.8
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 1.5e-45 187.6 327 54.7
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.5e-45 187.6 320 85.3
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.5e-45 187.6 320 85.3
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 2.0e-45 187.2 339 78.2
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 2.6e-45 186.8 320 89.1
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 1.0e-44 184.9 237 91.1
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 1.3e-44 184.5 243 71.2
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 5.0e-44 182.6 318 83.6
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.7e-42 176.8 336 75.9
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 3.6e-42 176.4 313 86.9
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 6.1e-42 175.6 316 88.0
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 7.9e-42 175.3 319 87.1
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 7.9e-42 175.3 101 82.2
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.4e-41 174.5 283 77.0
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 1.8e-41 174.1 344 79.7
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 2.3e-41 173.7 323 72.1
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 5.1e-41 172.6 101 82.2
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 1.1e-40 171.4 106 84.9
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 1.5e-40 171.0 318 82.7
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 5.7e-40 169.1 222 93.7
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 2.2e-39 167.2 101 78.2
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.1e-38 164.9 95 86.3
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.1e-38 164.9 94 84.0
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.1e-38 164.9 94 84.0
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 1.8e-38 164.1 327 80.4
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 3.1e-38 163.3 313 83.1
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 3.1e-38 163.3 101 77.2
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 3.1e-38 163.3 101 77.2
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 5.3e-38 162.5 88 87.5
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 5.3e-38 162.5 104 77.9
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 2.0e-37 160.6 327 82.0
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 3.5e-37 159.8 97 78.4
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 5.9e-37 159.1 95 80.0
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 9.4e-35 151.8 253 78.7
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 9.7e-32 141.7 242 78.5
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 8.2e-31 138.7 73 87.7
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 1.0e-28 131.7 91 64.8
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 1.1e-27 128.3 304 78.6
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 1.5e-27 127.9 327 75.5
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.9e-27 127.5 276 81.9
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 1.2e-24 118.2 71 77.5
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.0e-20 105.1 87 62.1
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 3.2e-19 100.1 65 75.4
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 3.6e-18 96.7 118 92.4
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 6.1e-18 95.9 50 84.0
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 8.0e-18 95.5 64 65.6
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 1.5e-16 91.3 64 64.1
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 9.8e-16 88.6 258 87.2
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 4.9e-15 86.3 118 53.4
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 2.4e-14 84.0 242 71.5
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 4.5e-13 79.7 58 70.7
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 7.7e-13 79.0 76 53.9
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 1.3e-12 78.2 48 81.2
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 5.0e-12 76.3 41 90.2
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 4.2e-11 73.2 95 48.4
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 4.2e-11 73.2 41 85.4
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 3.6e-10 70.1 95 46.3
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 3.6e-10 70.1 41 82.9
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 5.7e-08 62.8 42 73.8
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 2.2e-07 60.8 40 72.5


User provided reference genes

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