Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 6.5e-167 590.9 349 100.0
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 2.2e-98 363.2 347 66.0
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 7.1e-97 358.2 348 65.8
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 2.1e-93 346.7 344 60.8
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 3.6e-93 345.9 348 66.7
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 1.1e-92 344.4 347 63.1
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 2.3e-92 343.2 348 64.4
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 6.8e-92 341.7 349 64.8
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 1.5e-91 340.5 343 61.5
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 2.0e-91 340.1 353 60.3
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 1.3e-90 337.4 365 57.3
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 3.2e-89 332.8 348 63.8
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 9.2e-89 331.3 344 59.0
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 2.7e-88 329.7 341 63.6
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 7.8e-88 328.2 344 62.8
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 1.0e-87 327.8 349 60.7
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 1.1e-86 324.3 350 62.9
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 1.9e-86 323.6 339 61.1
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 1.6e-85 320.5 339 60.5
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 3.1e-84 316.2 325 64.9
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 6.9e-84 315.1 341 61.6
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 2.0e-83 313.5 351 61.3
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 3.4e-83 312.8 353 56.4
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 4.4e-83 312.4 353 58.4
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 7.6e-83 311.6 344 58.7
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 1.7e-82 310.5 341 61.6
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 6.4e-82 308.5 339 54.0
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 1.1e-81 307.8 343 58.9
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 1.1e-81 307.8 352 57.7
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 1.4e-81 307.4 334 59.0
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 1.9e-81 307.0 340 58.8
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 7.1e-81 305.1 343 61.2
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 2.7e-80 303.1 310 59.7
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 6.0e-80 302.0 339 53.7
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 7.8e-80 301.6 350 57.4
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 1.7e-79 300.4 347 57.6
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 1.7e-79 300.4 339 59.9
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 9.6e-78 294.7 341 56.3
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 2.8e-77 293.1 343 57.1
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 3.6e-77 292.7 351 59.3
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 1.4e-76 290.8 349 55.9
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 2.4e-76 290.0 347 59.1
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 2.4e-76 290.0 339 59.9
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 5.3e-76 288.9 339 57.5
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 1.2e-75 287.7 301 56.1
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 1.5e-75 287.3 339 59.6
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.5e-75 287.3 339 59.6
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 7.6e-75 285.0 376 51.1
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 2.9e-74 283.1 346 55.5
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 2.9e-74 283.1 347 56.5
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 8.4e-74 281.6 353 56.7
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 1.9e-73 280.4 515 44.7
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 4.2e-73 279.3 346 56.9
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.2e-72 277.7 355 56.6
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 2.1e-72 276.9 348 56.3
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 3.5e-72 276.2 346 52.3
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 6.0e-72 275.4 347 55.9
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 1.8e-71 273.9 340 57.9
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 2.3e-71 273.5 344 55.2
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 1.5e-70 270.8 347 55.9
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 7.4e-70 268.5 346 56.9
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 2.1e-69 266.9 345 55.4
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 2.4e-68 263.5 351 48.7
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 3.1e-68 263.1 354 50.3
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.1e-65 254.6 352 52.3
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 1.1e-65 254.6 338 53.0
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 5.5e-65 252.3 343 48.7
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 9.3e-65 251.5 340 52.4
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 9.3e-65 251.5 343 52.2
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 2.7e-64 250.0 334 58.4
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 1.0e-63 248.1 346 51.7
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 3.0e-63 246.5 341 47.8
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 3.9e-63 246.1 357 46.8
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 3.9e-63 246.1 259 62.5
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 8.7e-63 245.0 303 54.1
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 1.9e-62 243.8 339 47.8
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 7.4e-62 241.9 344 48.3
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 1.3e-61 241.1 301 56.5
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 2.1e-61 240.4 329 53.8
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 4.8e-61 239.2 283 56.5
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 4.8e-61 239.2 353 46.2
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 8.2e-61 238.4 337 51.9
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 1.8e-60 237.3 341 46.9
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 2.4e-60 236.9 302 49.7
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 3.1e-60 236.5 340 50.6
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 6.9e-60 235.3 325 54.2
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 4.5e-59 232.6 258 64.7
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 1.7e-58 230.7 447 42.7
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 1.7e-58 230.7 341 53.4
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 8.4e-58 228.4 343 46.4
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 1.9e-57 227.3 350 44.6
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 5.5e-57 225.7 326 45.4
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 9.3e-57 224.9 343 46.1
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 1.3e-55 221.1 294 54.8
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 1.9e-54 217.2 355 45.4
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 2.5e-54 216.9 305 54.1
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 1.3e-53 214.5 344 41.6
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 1.6e-53 214.2 314 51.6
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 4.8e-53 212.6 240 55.0
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 6.3e-53 212.2 244 58.6
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 2.4e-52 210.3 353 41.6
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 2.4e-52 210.3 353 41.6
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 4.1e-52 209.5 346 41.9
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 5.3e-52 209.1 338 47.0
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 1.7e-50 204.1 351 47.0
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 2.9e-50 203.4 270 55.9
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 4.2e-49 199.5 295 45.4
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 7.2e-49 198.7 339 47.8
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 1.2e-48 198.0 348 42.8
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 2.1e-48 197.2 294 43.5
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 2.3e-47 193.7 254 51.6
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 4.3e-46 189.5 347 40.3
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 4.8e-45 186.0 342 40.9
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 2.0e-43 180.6 342 39.2
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 2.6e-43 180.3 297 43.4
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 3.4e-43 179.9 353 37.7
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 3.8e-42 176.4 346 39.9
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 1.0e-39 168.3 339 36.3
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 6.3e-37 159.1 298 39.9
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 8.2e-37 158.7 307 39.4
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 2.9e-34 150.2 312 35.6
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 8.5e-34 148.7 306 36.3
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 1.2e-32 144.8 297 35.0
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 1.6e-32 144.4 119 68.1
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 2.8e-29 133.7 320 38.1
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 1.3e-26 124.8 340 34.7
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 5.0e-26 122.9 239 36.8
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 1.9e-25 120.9 191 40.8
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 3.3e-22 110.2 280 42.1
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 5.7e-22 109.4 99 59.6
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 1.7e-21 107.8 155 43.9
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 2.8e-21 107.1 134 54.5
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 4.8e-21 106.3 271 33.6
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 1.4e-20 104.8 378 32.0
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 3.1e-20 103.6 95 65.3
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 9.1e-20 102.1 98 61.2
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 2.7e-19 100.5 106 54.7
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 7.7e-19 99.0 293 29.7
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 3.2e-17 93.6 272 35.3
Gohir.D13G101706 Gossypium hirsutum HOM05D005253 ORTHO05D006058 2.1e-16 90.9 79 65.8
Duzib132G0740 Durio zibethinus HOM05D005253 ORTHO05D006058 4.1e-12 76.6 77 58.4
Oeu051243.1 Olea europaea HOM05D005253 ORTHO05D006058 2.3e-10 70.9 92 42.4
BraA02t04942Z Brassica rapa HOM05D009919 ORTHO05D012044 8.6e-10 68.9 118 39.0
SMO134G0145 Selaginella moellendorffii HOM05D025852 ORTHO05D006058 3.6e-08 63.5 311 26.7
BolC2t06302H Brassica oleracea HOM05D009919 ORTHO05D012044 1.4e-07 61.6 114 37.7
C02p03410 Brassica napus HOM05D009919 ORTHO05D012044 5.2e-07 59.7 112 37.5
PSO063G4277 Papaver somniferum HOM05D005253 ORTHO05D006058 6.8e-07 59.3 92 44.6


User provided reference genes

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