Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10020918m.g Citrus clementina HOM05D006946 ORTHO05D008634 5.6e-203 710.7 349 100.0
Atru.chr5.122 Acer truncatum HOM05D006946 ORTHO05D008634 4.1e-129 465.3 355 68.2
GSVIVG01018284001 Vitis vinifera HOM05D006946 ORTHO05D008634 8.8e-124 447.6 351 64.1
Thecc.01G395400 Theobroma cacao HOM05D006946 ORTHO05D008634 1.0e-119 434.1 347 64.6
CSS0010598 Camellia sinensis var. sinensis HOM05D006946 ORTHO05D008634 6.6e-119 431.4 348 63.8
Duzib133G0968 Durio zibethinus HOM05D006946 ORTHO05D008634 9.5e-118 427.6 347 64.0
QL04p030124 Quercus lobata HOM05D006946 ORTHO05D008634 8.9e-116 421.0 336 63.4
Rhsim07G0036200 Rhododendron simsii HOM05D006946 ORTHO05D008634 1.1e-113 414.1 354 60.2
Phvul.010G049700 Phaseolus vulgaris HOM05D006946 ORTHO05D008634 5.4e-113 411.8 356 59.3
Haze_02851 Corylus avellana HOM05D006946 ORTHO05D008634 7.0e-113 411.4 350 60.9
COL.COLO4_12403 Corchorus olitorius HOM05D006946 ORTHO05D008634 2.7e-112 409.5 353 60.9
FAN06G0853 Fragaria x ananassa HOM05D006946 ORTHO05D008634 3.5e-112 409.1 353 58.4
FvH4_7g10220 Fragaria vesca HOM05D006946 ORTHO05D008634 1.3e-111 407.1 353 58.1
PGR042G0965 Punica granatum HOM05D006946 ORTHO05D008634 2.3e-111 406.4 360 58.3
FAN06G0591 Fragaria x ananassa HOM05D006946 ORTHO05D008634 3.0e-111 406.0 353 58.1
Cfa011066 Carpinus fangiana HOM05D006946 ORTHO05D008634 6.6e-111 404.8 342 61.7
VMungo0331G1797 Vigna mungo HOM05D006946 ORTHO05D008634 8.6e-111 404.4 360 58.3
vmacro13499 Vaccinium macrocarpon HOM05D006946 ORTHO05D008634 1.5e-110 403.7 354 59.0
TAR629G0179 Trochodendron aralioides HOM05D006946 ORTHO05D008634 7.3e-110 401.4 359 59.1
FAN03G2893 Fragaria x ananassa HOM05D006946 ORTHO05D008634 1.4e-108 397.1 353 57.5
Lj3g0014310 Lotus japonicus HOM05D006946 ORTHO05D008634 4.0e-108 395.6 341 58.9
CANSAT25G1232 Cannabis sativa HOM05D006946 ORTHO05D008634 5.2e-108 395.2 354 57.1
Actinidia32506 Actinidia chinensis HOM05D006946 ORTHO05D008634 8.9e-108 394.4 350 58.3
Glyma.03G110700 Glycine max HOM05D006946 ORTHO05D008634 8.9e-108 394.4 363 56.7
Potri.002G138000 Populus trichocarpa HOM05D006946 ORTHO05D008634 2.6e-107 392.9 356 58.4
Medtr8g006950 Medicago truncatula HOM05D006946 ORTHO05D008634 3.4e-107 392.5 363 56.5
FAN10G0617 Fragaria x ananassa HOM05D006946 ORTHO05D008634 1.3e-106 390.6 353 57.2
FAN10G1802 Fragaria x ananassa HOM05D006946 ORTHO05D008634 1.3e-106 390.6 353 57.2
Hma1.2p1_0072F.1_g038310 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 1.7e-106 390.2 357 59.1
TPR.G33124 Trifolium pratense HOM05D006946 ORTHO05D008634 2.4e-105 386.3 362 53.6
MSTRG.20688 Avicennia marina HOM05D006946 ORTHO05D008634 7.0e-105 384.8 352 58.5
arahy.Tifrunner.gnm1.ann1.4A1F8H Arachis hypogaea HOM05D006946 ORTHO05D008634 9.2e-105 384.4 356 55.3
arahy.Tifrunner.gnm1.ann1.GB8G30 Arachis hypogaea HOM05D006946 ORTHO05D008634 9.2e-105 384.4 356 55.1
TWI14G0580 Tripterygium wilfordii HOM05D006946 ORTHO05D008634 2.7e-104 382.9 338 60.9
Ca_25802_v3 Cicer arietinum L. HOM05D006946 ORTHO05D008634 8.6e-103 377.9 360 54.2
THA.LOC104817188 Tarenaya hassleriana HOM05D006946 ORTHO05D008634 1.5e-102 377.1 345 55.9
vmacro13524 Vaccinium macrocarpon HOM05D006946 ORTHO05D008634 1.9e-102 376.7 414 50.5
Sp5g02920 Schrenkiella parvula HOM05D006946 ORTHO05D008634 2.5e-102 376.3 282 62.8
Gorai.008G109100 Gossypium raimondii HOM05D006946 ORTHO05D008634 5.6e-102 375.2 345 58.3
RcHm_v2.0_Chr1g0347961 Rosa chinensis HOM05D006946 ORTHO05D008634 5.6e-102 375.2 347 55.6
Lalb_Chr07g0195411 Lupinus albus HOM05D006946 ORTHO05D008634 9.5e-102 374.4 360 55.6
Aqoxy5G04137 Aquilegia oxysepala HOM05D006946 ORTHO05D008634 4.7e-101 372.1 356 54.8
Aqoxy1G01627 Aquilegia oxysepala HOM05D006946 ORTHO05D008634 1.8e-100 370.2 350 54.9
Migut.B01532 Erythranthe guttata HOM05D006946 ORTHO05D008634 3.1e-100 369.4 346 57.2
Gohir.D12G100200 Gossypium hirsutum HOM05D006946 ORTHO05D008634 1.5e-99 367.1 345 57.1
CARHR170620 Cardamine hirsuta HOM05D006946 ORTHO05D008634 2.0e-99 366.7 283 62.5
HanXRQChr13g0423251 Helianthus annuus HOM05D006946 ORTHO05D008634 3.4e-99 365.9 331 58.3
Thhalv10006060m.g Eutrema salsugineum HOM05D006946 ORTHO05D008634 1.7e-98 363.6 283 61.8
Nitab4.5_0007027g0020 Nicotiana tabacum HOM05D006946 ORTHO05D008634 2.9e-98 362.8 348 54.0
Cc02_g25140 Coffea canephora HOM05D006946 ORTHO05D008634 6.4e-98 361.7 354 56.2
PSO717G0092 Papaver somniferum HOM05D006946 ORTHO05D008634 2.1e-96 356.7 351 52.1
AT3G60300 Arabidopsis thaliana HOM05D006946 ORTHO05D008634 2.7e-96 356.3 287 59.9
PSO675G1257 Papaver somniferum HOM05D006946 ORTHO05D008634 6.0e-96 355.1 351 52.4
PGSC0003DMG400025996 Solanum tuberosum HOM05D006946 ORTHO05D008634 6.0e-96 355.1 356 51.7
Sabra02G0106500 Salix brachista HOM05D006946 ORTHO05D008634 2.3e-95 353.2 436 48.4
Carub.0005s2704 Capsella rubella HOM05D006946 ORTHO05D008634 3.0e-95 352.8 282 58.9
CAN.G1473.5 Capsicum annuum HOM05D006946 ORTHO05D008634 5.1e-95 352.1 321 56.4
Lsat_1_v5_gn_3_126900 Lactuca sativa HOM05D006946 ORTHO05D008634 1.5e-94 350.5 352 55.7
ECA240G0199 Erigeron canadensis HOM05D006946 ORTHO05D008634 2.5e-94 349.7 348 56.3
Solyc01g090220.4 Solanum lycopersicum HOM05D006946 ORTHO05D008634 3.3e-94 349.4 354 51.4
Eucgr.E01546 Eucalyptus grandis HOM05D006946 ORTHO05D008634 5.6e-94 348.6 361 52.4
SalBow5G3575 Salvia bowleyana HOM05D006946 ORTHO05D008634 1.2e-93 347.4 359 52.1
Psat4g224200 Pisum sativum HOM05D006946 ORTHO05D008634 4.7e-93 345.5 341 52.5
Gohir.A12G097300 Gossypium hirsutum HOM05D006946 ORTHO05D008634 1.5e-91 340.5 254 66.5
Sopen01g036020 Solanum pennellii HOM05D006946 ORTHO05D008634 1.5e-91 340.5 357 50.4
Aa31LG10G14420 Aethionema arabicum HOM05D006946 ORTHO05D008634 3.4e-91 339.3 305 57.0
Nn1g00836 Nelumbo nucifera HOM05D006946 ORTHO05D008634 1.4e-89 334.0 351 53.6
SGA_v2.0_scaffold340G49324 Striga asiatica HOM05D006946 ORTHO05D008634 1.3e-87 327.4 372 48.9
Sc02g0003120 Simmondsia chinensis HOM05D006946 ORTHO05D008634 2.3e-87 326.6 366 50.0
C04p32350 Brassica napus HOM05D006946 ORTHO05D008634 3.9e-87 325.9 290 56.9
Zm00001eb200010 Zea mays HOM05D006946 ORTHO05D008634 3.6e-85 319.3 353 48.4
A04p01710 Brassica napus HOM05D006946 ORTHO05D008634 6.2e-85 318.5 278 56.5
AL5G42520 Arabidopsis lyrata HOM05D006946 ORTHO05D008634 5.2e-84 315.5 282 56.0
BolC4t24784H Brassica oleracea HOM05D006946 ORTHO05D008634 5.8e-83 312.0 302 53.3
BraA04t15895Z Brassica rapa HOM05D006946 ORTHO05D008634 3.8e-82 309.3 296 53.0
EL10Ac1g00757 Beta vulgaris HOM05D006946 ORTHO05D008634 3.2e-81 306.2 317 51.4
HPP92_022105 Vanilla planifolia HOM05D006946 ORTHO05D008634 1.7e-79 300.4 352 46.9
CiPaw.14G020200 Carya illinoinensis HOM05D006946 ORTHO05D008634 4.3e-78 295.8 205 67.8
HPP92_022132 Vanilla planifolia HOM05D006946 ORTHO05D008634 1.3e-77 294.3 352 46.9
Nitab4.5_0000920g0010 Nicotiana tabacum HOM05D006946 ORTHO05D008634 2.8e-77 293.1 363 46.0
Manes.05G055200 Manihot esculenta HOM05D006946 ORTHO05D008634 4.0e-76 289.3 256 59.4
ATR0057G021 Amborella trichopoda HOM05D006946 ORTHO05D008634 2.9e-74 283.1 344 44.8
AUR62023403 Chenopodium quinoa HOM05D006946 ORTHO05D008634 8.4e-74 281.6 303 50.8
Dinv43613 Davidia involucrata HOM05D006946 ORTHO05D008634 2.4e-73 280.0 243 62.6
Peaxi162Scf00475g00422 Petunia axillaris HOM05D000253 ORTHO05D000149 2.3e-71 273.5 414 41.1
unitig_750.g28410 Utricularia gibba HOM05D006946 ORTHO05D008634 1.9e-70 270.4 360 47.5
Ah.05g177890 Amaranthus hybridus HOM05D006946 ORTHO05D008634 2.1e-69 266.9 312 47.4
Prupe.2G132200 Prunus persica HOM05D006946 ORTHO05D008634 2.6e-67 260.0 258 53.5
Medtr5g027110 Medicago truncatula HOM05D006946 ORTHO05D008634 3.2e-65 253.1 252 53.2
Actinidia18349 Actinidia chinensis HOM05D006946 ORTHO05D008634 4.6e-64 249.2 252 54.0
AUR62013748 Chenopodium quinoa HOM05D006946 ORTHO05D008634 1.6e-61 240.7 333 43.8
Hund27407 Selenicereus undatus HOM05D006946 ORTHO05D008634 5.8e-59 232.3 563 32.0
Lj9A556T13 Lonicera japonica HOM05D006946 ORTHO05D008634 9.3e-57 224.9 257 51.4
Hma1.2p1_0072F.1_g038320 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 1.3e-53 214.5 168 61.3
Mapoly0040s0025 Marchantia polymorpha HOM05D006946 ORTHO05D008634 2.6e-51 206.8 345 38.0
AagrBONN_evm.TU.Sc2ySwM_117.2461 Anthoceros agrestis HOM05D006946 ORTHO05D008634 9.1e-44 181.8 307 36.2
PSO017G5203 Papaver somniferum HOM05D006946 ORTHO05D008634 2.0e-43 180.6 178 50.0
Potri.014G048000 Populus trichocarpa HOM05D006946 ORTHO05D008634 3.4e-43 179.9 207 49.3
SMO352G0084 Selaginella moellendorffii HOM05D006946 ORTHO05D008634 2.6e-38 163.7 159 48.4
Cpa.g.sc22.64 Carica papaya HOM05D006946 ORTHO05D008634 1.7e-34 151.0 103 71.8
Cpa.g.sc22.65 Carica papaya HOM05D006946 ORTHO05D008634 1.9e-33 147.5 230 41.7
CBR_g38735 Chara braunii HOM05D000019 ORTHO05D000353 2.3e-31 140.6 319 28.8
Psat1g142640 Pisum sativum HOM05D006946 ORTHO05D008634 9.4e-25 118.6 126 48.4
MCO13G420 Micromonas commoda HOM05D006946 ORTHO05D008634 1.5e-22 111.3 168 34.5
Psat2g026240 Pisum sativum HOM05D006946 ORTHO05D008634 4.4e-22 109.8 110 50.0
Psat1g142600 Pisum sativum HOM05D006946 ORTHO05D008634 3.7e-21 106.7 108 50.9
MD02G1213400 Malus domestica HOM05D006946 ORTHO05D008634 5.0e-18 96.3 115 44.3
Cre13.g581801 Chlamydomonas reinhardtii HOM05D006946 ORTHO05D008634 1.5e-17 94.7 240 28.3
AUR62044571 Chenopodium quinoa HOM05D006946 ORTHO05D008634 1.7e-13 81.3 340 26.5
Psat5g300840 Pisum sativum HOM05D006946 ORTHO05D008634 7.0e-12 75.9 61 52.5
Hma1.2p1_0072F.1_g038330 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 2.7e-11 73.9 46 67.4
Psat6g138360 Pisum sativum HOM05D000346 ORTHO05D008634 1.7e-10 71.2 88 46.6
QL04p089514 Quercus lobata HOM05D006946 ORTHO05D008634 3.8e-10 70.1 37 83.8
PRCOL_00003801 Prasinoderma coloniale HOM05D013257 ORTHO05D015313 1.1e-09 68.6 230 23.9
SEGI_22555 Sequoiadendron giganteum HOM05D006946 ORTHO05D000002 4.7e-08 63.2 140 37.1
Psat0s4856g0040 Pisum sativum HOM05D006946 ORTHO05D008634 1.0e-07 62.0 81 43.2
Os11g0565400 Oryza sativa ssp. japonica HOM05D006946 ORTHO05D008634 1.4e-07 61.6 45 62.2
VMungo1127G0960 Vigna mungo HOM05D003486 ORTHO05D004600 1.8e-07 61.2 295 23.4
HPP92_022101 Vanilla planifolia HOM05D006946 ORTHO05D008634 2.3e-07 60.8 46 56.5
Sopen11g020460 Solanum pennellii HOM05D003486 ORTHO05D004600 3.0e-07 60.5 118 30.5
Rhsim02G0076900 Rhododendron simsii HOM05D003486 ORTHO05D004600 1.2e-06 58.5 125 24.8
Potri.007G128300 Populus trichocarpa HOM05D003486 ORTHO05D004600 1.5e-06 58.2 90 28.9
CAN.G336.8 Capsicum annuum HOM05D003486 ORTHO05D004600 5.7e-06 56.2 88 30.7
Sabra07G0104700 Salix brachista HOM05D003486 ORTHO05D004600 5.7e-06 56.2 90 26.7
Lsat_1_v5_gn_3_115420 Lactuca sativa HOM05D003486 ORTHO05D004600 9.8e-06 55.5 124 26.6
MD04G1040400 Malus domestica HOM05D003486 ORTHO05D004600 9.8e-06 55.5 139 28.1


User provided reference genes

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