Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 3.2e-198 694.9 353 100.0
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 1.8e-132 476.5 361 70.6
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 7.1e-129 464.5 356 69.1
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 1.1e-126 457.2 376 66.5
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 1.1e-126 457.2 322 72.0
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 1.6e-125 453.4 336 72.6
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 4.7e-125 451.8 288 77.1
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 1.8e-124 449.9 283 79.2
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 4.0e-124 448.7 285 78.2
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 1.5e-123 446.8 281 77.9
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 3.4e-123 445.7 336 70.2
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 3.4e-123 445.7 367 65.1
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 9.9e-123 444.1 299 74.6
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 2.9e-122 442.6 314 72.6
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 8.4e-122 441.0 318 73.0
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 3.2e-121 439.1 356 65.7
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 7.1e-121 438.0 285 76.5
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 1.2e-120 437.2 363 65.3
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 1.6e-120 436.8 285 76.5
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 4.6e-120 435.3 335 68.4
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 4.6e-120 435.3 368 64.1
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 4.6e-120 435.3 312 73.1
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 6.0e-120 434.9 285 75.1
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 6.0e-120 434.9 365 65.2
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.3e-119 433.7 293 75.1
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 1.3e-119 433.7 283 76.3
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 2.3e-119 433.0 348 65.2
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 3.9e-119 432.2 322 68.9
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 5.1e-119 431.8 338 67.8
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 6.6e-119 431.4 283 75.3
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 8.7e-119 431.0 361 65.1
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 1.5e-118 430.3 356 66.3
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.9e-118 429.9 337 68.0
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 2.5e-118 429.5 322 69.9
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 4.3e-118 428.7 327 69.1
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 2.8e-117 426.0 322 69.3
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 1.8e-116 423.3 332 67.8
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 3.1e-116 422.5 325 68.6
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 4.0e-116 422.2 361 64.3
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 4.0e-116 422.2 358 62.6
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 6.9e-116 421.4 346 63.9
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 2.0e-115 419.9 377 59.9
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 2.0e-115 419.9 284 73.2
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 2.6e-115 419.5 330 67.3
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 3.4e-115 419.1 286 74.8
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 4.5e-115 418.7 264 77.7
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 5.8e-115 418.3 355 62.8
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 5.8e-115 418.3 357 62.2
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 7.6e-115 417.9 330 67.0
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 7.6e-115 417.9 330 67.0
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 7.6e-115 417.9 330 67.0
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 9.9e-115 417.5 327 67.6
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 9.9e-115 417.5 353 63.2
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 9.9e-115 417.5 319 66.8
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 2.2e-114 416.4 359 63.8
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 2.2e-114 416.4 330 66.7
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 2.2e-114 416.4 327 68.2
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 2.9e-114 416.0 370 61.4
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 1.1e-113 414.1 363 61.4
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 4.2e-113 412.1 356 61.8
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 2.7e-112 409.5 305 66.9
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 3.5e-112 409.1 360 62.8
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.3e-111 407.1 357 62.2
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 1.3e-111 407.1 305 65.9
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 2.3e-111 406.4 289 69.9
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 2.3e-111 406.4 335 62.1
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 3.0e-111 406.0 297 69.0
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 5.1e-111 405.2 314 66.2
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 1.9e-110 403.3 358 62.3
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 2.5e-110 402.9 299 70.2
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 4.8e-109 398.7 308 66.6
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 1.1e-108 397.5 374 57.0
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 9.0e-108 394.4 283 70.0
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 1.3e-106 390.6 283 67.5
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 3.5e-104 382.5 296 64.9
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 2.3e-103 379.8 284 65.5
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 2.1e-101 373.2 285 67.0
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 2.4e-100 369.8 262 71.0
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 3.1e-100 369.4 250 69.6
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 4.0e-100 369.0 250 71.2
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 4.0e-100 369.0 374 56.1
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 9.0e-100 367.9 256 72.3
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 4.2e-97 359.0 304 61.2
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 3.5e-96 355.9 260 66.2
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 6.0e-96 355.1 289 62.6
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 2.3e-95 353.2 248 71.4
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 3.0e-95 352.8 316 58.9
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 5.7e-94 348.6 257 68.5
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 3.1e-92 342.8 249 69.5
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 2.6e-91 339.7 245 68.6
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 4.5e-91 339.0 249 68.7
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 1.3e-90 337.4 343 58.0
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 3.2e-89 332.8 254 63.4
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 5.5e-89 332.0 254 64.2
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 9.3e-89 331.3 254 64.6
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 1.6e-88 330.5 257 62.6
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 4.6e-88 328.9 244 67.2
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.3e-87 327.4 225 71.6
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 3.9e-87 325.9 257 62.3
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 2.5e-86 323.2 255 60.8
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 1.6e-85 320.5 257 59.1
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 1.6e-85 320.5 257 59.1
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 6.3e-85 318.5 278 57.6
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.4e-84 317.4 253 59.3
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 2.4e-84 316.6 288 54.5
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 4.1e-84 315.8 263 58.2
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 5.3e-84 315.5 288 54.2
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 1.7e-82 310.5 288 53.5
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 4.6e-80 302.4 257 56.0
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 4.6e-80 302.4 257 56.0
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 7.9e-80 301.6 255 63.1
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 1.8e-79 300.4 258 55.0
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 1.8e-79 300.4 258 55.0
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 2.3e-79 300.1 191 76.4
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 6.7e-79 298.5 254 56.7
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 7.4e-78 295.0 257 54.9
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 1.3e-77 294.3 255 56.1
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 4.8e-77 292.4 258 54.3
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 2.4e-76 290.0 259 54.1
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 3.1e-76 289.7 291 51.2
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 5.3e-76 288.9 257 54.5
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 9.1e-76 288.1 231 57.6
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 1.5e-75 287.3 259 53.7
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 2.2e-74 283.5 288 51.7
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 6.5e-74 282.0 230 57.8
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 1.1e-73 281.2 325 48.6
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 1.9e-73 280.4 269 52.4
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 1.5e-70 270.8 250 56.8
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 9.7e-70 268.1 171 76.6
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.6e-67 260.8 255 50.6
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.0e-66 258.1 249 52.6
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 1.1e-65 254.6 194 67.5
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 3.2e-65 253.1 192 65.1
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 5.5e-65 252.3 244 53.3
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 3.6e-64 249.6 229 52.0
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.3e-61 241.1 255 49.4
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 1.7e-61 240.7 255 49.4
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 1.9e-57 227.3 289 47.8
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 2.5e-57 226.9 131 82.4
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 4.7e-56 222.6 397 39.0
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 2.3e-55 220.3 242 51.7
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.2e-53 213.8 179 57.0
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 1.8e-52 210.7 197 52.8
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 2.0e-51 207.2 247 46.2
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 3.6e-48 196.4 142 69.7
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 1.4e-47 194.5 151 59.6
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.7e-45 187.6 166 54.8
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 1.3e-42 177.9 242 47.5
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 1.2e-40 171.4 233 42.1
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 8.3e-37 158.7 198 49.0
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 2.1e-32 144.1 240 39.6
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 2.1e-32 144.1 126 59.5
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 2.9e-29 133.7 240 35.8
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 4.1e-28 129.8 217 42.9
arahy.Tifrunner.gnm1.ann1.R8SYM2 Arachis hypogaea HOM05D003990 ORTHO05D004925 5.0e-26 122.9 122 54.1
FAN18G2309 Fragaria x ananassa HOM05D003990 ORTHO05D004925 2.8e-24 117.1 69 81.2
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.7e-21 107.8 110 49.1
Duzib068G0872 Durio zibethinus HOM05D003990 ORTHO05D004925 8.3e-21 105.5 87 60.9
arahy.Tifrunner.gnm1.ann1.S5BUNY Arachis hypogaea HOM05D003990 ORTHO05D004925 1.2e-19 101.7 65 76.9
Cre01.g015550 Chlamydomonas reinhardtii HOM05D003990 ORTHO05D004925 7.8e-19 99.0 181 36.5
Migut.E00635 Erythranthe guttata HOM05D003990 ORTHO05D004925 1.7e-18 97.8 90 58.9
EL10Ac6g14266 Beta vulgaris HOM05D003990 ORTHO05D004925 9.5e-17 92.0 70 68.6
arahy.Tifrunner.gnm1.ann1.228U7D Arachis hypogaea HOM05D003990 ORTHO05D004925 1.2e-16 91.7 68 69.1
Cfa021766 Carpinus fangiana HOM05D003990 ORTHO05D004925 4.7e-16 89.7 208 29.3
Hma1.2p1_0212F.1_g090250 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 4.1e-12 76.6 61 63.9
unitig_52.g17197 Utricularia gibba HOM05D003990 ORTHO05D004925 9.2e-12 75.5 99 45.5
Prupe.2G052300 Prunus persica HOM05D003990 ORTHO05D004925 1.6e-11 74.7 66 53.0
QL02p029160 Quercus lobata HOM05D003990 ORTHO05D004925 7.8e-11 72.4 61 57.4
AagrBONN_evm.TU.Sc2ySwM_344.3329 Anthoceros agrestis HOM05D003990 ORTHO05D071624 1.3e-10 71.6 287 29.3
QL02p029165 Quercus lobata HOM05D003990 ORTHO05D010865 3.0e-10 70.5 77 53.2
AT4G24070 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.9e-09 67.8 63 55.6
VMungo0647G2082 Vigna mungo HOM05D003990 ORTHO05D004925 8.1e-08 62.4 70 41.4


User provided reference genes

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