Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 1.2e-203 713.0 356 100.0
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 8.1e-165 583.9 349 84.2
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 3.9e-159 565.1 362 79.3
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 9.6e-158 560.5 347 80.1
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 1.4e-153 546.6 355 78.6
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 3.5e-152 542.0 347 77.8
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 7.8e-152 540.8 350 77.4
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 1.3e-151 540.0 347 79.3
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 6.6e-151 537.7 333 80.2
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 3.3e-150 535.4 351 76.6
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 9.6e-150 533.9 340 79.4
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 2.8e-149 532.3 345 77.4
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 6.2e-149 531.2 352 77.0
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 1.8e-148 529.6 349 75.6
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 1.8e-148 529.6 348 74.7
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 1.8e-148 529.6 319 81.8
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 9.0e-148 527.3 341 78.9
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 2.0e-147 526.2 320 77.8
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 4.4e-147 525.0 318 78.3
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 1.7e-146 523.1 348 74.1
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 2.2e-146 522.7 318 77.4
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 2.9e-146 522.3 332 77.4
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 4.9e-146 521.5 317 78.5
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 1.1e-145 520.4 318 77.0
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 4.2e-145 518.5 317 77.9
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 5.4e-145 518.1 312 81.4
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 1.2e-144 516.9 301 83.4
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 1.6e-144 516.5 379 71.5
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 2.7e-144 515.8 348 75.3
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 3.5e-144 515.4 345 74.8
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 6.0e-144 514.6 343 75.5
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 1.0e-143 513.8 345 75.4
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 1.3e-143 513.5 341 75.7
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 1.7e-143 513.1 309 79.9
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 2.3e-143 512.7 355 73.0
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 2.3e-143 512.7 290 84.8
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 6.6e-143 511.1 325 78.5
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 8.7e-143 510.8 316 79.4
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 1.1e-142 510.4 344 74.4
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 1.5e-142 510.0 344 74.7
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 1.9e-142 509.6 348 73.9
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 1.9e-142 509.6 377 70.6
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 2.5e-142 509.2 374 70.3
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 2.5e-142 509.2 346 73.7
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 3.3e-142 508.8 319 78.1
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 4.3e-142 508.4 343 74.3
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 5.6e-142 508.1 322 78.0
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 7.3e-142 507.7 345 73.0
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 2.1e-141 506.1 316 77.5
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 4.8e-141 505.0 350 74.0
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 4.8e-141 505.0 348 73.0
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 8.1e-141 504.2 323 77.1
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 8.1e-141 504.2 320 75.6
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 1.4e-140 503.4 304 80.6
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 1.8e-140 503.1 350 72.0
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 1.2e-139 500.4 336 73.5
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 2.0e-139 499.6 348 73.3
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 3.4e-139 498.8 318 76.7
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 5.8e-139 498.0 357 73.1
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 7.6e-139 497.7 359 70.5
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 1.3e-138 496.9 347 72.0
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 2.2e-138 496.1 305 77.7
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 3.8e-138 495.4 325 73.8
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 4.9e-138 495.0 294 81.0
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 4.6e-136 488.4 325 75.1
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 1.3e-135 486.9 358 71.2
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 1.8e-135 486.5 355 69.6
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 1.8e-135 486.5 341 71.3
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 3.9e-135 485.3 315 74.0
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 1.5e-134 483.4 310 75.5
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 5.6e-134 481.5 308 75.3
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 9.6e-134 480.7 325 74.8
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 1.6e-133 479.9 313 75.7
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 4.8e-133 478.4 315 75.2
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 4.0e-132 475.3 362 66.9
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 4.0e-132 475.3 362 66.9
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 9.0e-132 474.2 317 76.3
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 1.5e-131 473.4 306 75.5
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 4.9e-130 468.4 311 72.3
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 8.4e-130 467.6 379 65.7
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 3.9e-127 458.8 373 65.4
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 3.9e-127 458.8 311 71.4
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 2.6e-123 446.0 362 65.5
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 3.4e-123 445.7 289 76.5
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 5.0e-122 441.8 317 71.3
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 1.0e-119 434.1 287 73.5
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 2.4e-116 422.9 276 75.0
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 2.5e-113 412.9 280 71.1
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 6.7e-111 404.8 356 57.6
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 5.7e-110 401.7 363 57.9
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 8.2e-109 397.9 288 70.1
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 9.4e-105 384.4 269 71.4
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 2.7e-104 382.9 301 61.8
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.0e-103 380.9 237 76.8
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 7.4e-102 374.8 268 71.3
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 8.2e-101 371.3 319 63.9
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 1.0e-98 364.4 237 74.7
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 8.5e-98 361.3 322 56.2
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 3.2e-97 359.4 231 74.5
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 6.7e-95 351.7 303 62.4
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 1.7e-93 347.1 327 57.8
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 4.8e-93 345.5 205 81.5
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 2.7e-91 339.7 210 77.6
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 3.8e-90 335.9 351 55.3
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 3.7e-85 319.3 210 76.2
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.2e-83 314.3 200 75.5
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 1.3e-82 310.8 307 55.0
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 1.7e-82 310.5 341 50.4
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 2.5e-73 280.0 218 62.8
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 2.5e-65 253.4 187 70.1
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 2.8e-64 250.0 148 79.1
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 2.0e-59 233.8 290 47.2
CANSAT25G1380 Cannabis sativa HOM05D005534 ORTHO05D006642 3.3e-57 226.5 132 82.6
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 3.1e-55 219.9 246 50.4
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 1.2e-51 208.0 120 80.8
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 3.9e-50 203.0 137 73.0
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 2.5e-49 200.3 181 59.1
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 3.6e-48 196.4 198 56.6
Hma1.2p1_0708F.1_g207140 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 4.7e-48 196.1 119 80.7
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 1.1e-47 194.9 323 37.8
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 6.8e-47 192.2 120 74.2
C07p20870 Brassica napus HOM05D005534 ORTHO05D006642 3.4e-46 189.9 127 76.4
BolC7t42620H Brassica oleracea HOM05D005534 ORTHO05D006642 3.4e-46 189.9 127 76.4
BcaC06g34996 Brassica carinata HOM05D005534 ORTHO05D006642 3.5e-43 179.9 123 74.0
CSS0033231 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 8.6e-42 175.3 162 60.5
A07p14190 Brassica napus HOM05D005534 ORTHO05D006642 1.1e-39 168.3 143 67.8
Lj1A297G57 Lonicera japonica HOM05D005534 ORTHO05D006642 7.8e-35 152.1 91 83.5
FAN08G1090 Fragaria x ananassa HOM05D005534 ORTHO05D006642 1.6e-27 127.9 112 58.9
Glyma.04G256001 Glycine max HOM05D005534 ORTHO05D006642 5.1e-26 122.9 116 58.6
SEGI_02632 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 5.8e-22 109.4 74 68.9
unitig_899.g15651 Utricularia gibba HOM05D005534 ORTHO05D006642 7.1e-20 102.4 68 72.1
A07p14200 Brassica napus HOM05D002040 ORTHO05D006642 3.3e-17 93.6 81 59.3
CAN.G1062.3 Capsicum annuum HOM05D005534 ORTHO05D006642 1.4e-15 88.2 154 38.3
HanXRQChr11g0339001 Helianthus annuus HOM05D005534 ORTHO05D006642 4.0e-15 86.7 55 76.4
MCO12G480 Micromonas commoda HOM05D005534 ORTHO05D006642 1.5e-14 84.7 109 45.0
Lj1E297T0 Lonicera japonica HOM05D005534 ORTHO05D006642 5.8e-14 82.8 82 59.8
Lj1A290G37 Lonicera japonica HOM05D005534 ORTHO05D006642 2.2e-13 80.9 68 66.2
Lsat_1_v5_gn_2_74121 Lactuca sativa HOM05D000236 ORTHO05D000192 1.4e-12 78.2 57 63.2
HPP92_005611 Vanilla planifolia HOM05D000010 ORTHO05D429468 4.6e-11 73.2 66 56.1
BraA07t29177Z Brassica rapa HOM05D005534 ORTHO05D006642 2.1e-08 64.3 36 80.6
Lj1A290T43 Lonicera japonica HOM05D005534 ORTHO05D006642 8.2e-08 62.4 40 72.5
TPR.G30727 Trifolium pratense HOM05D005534 ORTHO05D006642 6.9e-07 59.3 50 56.0
Lsat_1_v5_gn_4_32401 Lactuca sativa HOM05D000240 ORTHO05D001153 9.0e-07 58.9 92 40.2


User provided reference genes

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