Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10020772m.g Citrus clementina HOM05D003970 ORTHO05D004615 1.5e-195 686.0 363 100.0
Ciclev10010674m.g Citrus clementina HOM05D003970 ORTHO05D004615 2.2e-178 629.0 362 90.6
TWI32G0099 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 3.0e-175 618.6 361 88.1
TWI34G1861 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 2.2e-173 612.5 361 88.1
Prupe.7G204000 Prunus persica HOM05D003970 ORTHO05D004615 1.0e-167 593.6 361 85.6
CiPaw.04G146900 Carya illinoinensis HOM05D003970 ORTHO05D004615 5.2e-167 591.3 358 86.6
CANSAT56G0340 Cannabis sativa HOM05D003970 ORTHO05D004615 7.4e-166 587.4 360 82.5
Atru.chr7.1654 Acer truncatum HOM05D003970 ORTHO05D004615 1.3e-165 586.6 358 83.0
Lj7A681T64 Lonicera japonica HOM05D003970 ORTHO05D004615 2.8e-165 585.5 359 85.0
RcHm_v2.0_Chr2g0094171 Rosa chinensis HOM05D003970 ORTHO05D004615 2.8e-165 585.5 359 85.5
MD02G1085700 Malus domestica HOM05D003970 ORTHO05D004615 1.4e-164 583.2 362 84.3
Duzib168G1513 Durio zibethinus HOM05D003970 ORTHO05D004615 1.8e-164 582.8 355 85.1
Thecc.09G082200 Theobroma cacao HOM05D003970 ORTHO05D004615 1.2e-163 580.1 357 84.9
Gohir.D13G197900 Gossypium hirsutum HOM05D003970 ORTHO05D004615 4.5e-163 578.2 356 83.4
DCAR_028283 Daucus carota HOM05D003970 ORTHO05D004615 7.7e-163 577.4 366 83.6
MD15G1212900 Malus domestica HOM05D003970 ORTHO05D004615 7.7e-163 577.4 362 82.6
FAN23G0579 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.0e-162 577.0 356 85.1
Gorai.013G226600 Gossypium raimondii HOM05D003970 ORTHO05D004615 1.0e-162 577.0 356 83.4
FAN28G0363 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.3e-162 576.6 356 84.8
Manes.16G098400 Manihot esculenta HOM05D003970 ORTHO05D004615 1.3e-162 576.6 366 84.7
Potri.018G051100 Populus trichocarpa HOM05D003970 ORTHO05D004615 1.3e-162 576.6 365 84.4
FAN26G0968 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.7e-162 576.2 356 84.6
AL7G44300 Arabidopsis lyrata HOM05D003970 ORTHO05D004615 2.2e-162 575.9 367 83.9
Dinv36802 Davidia involucrata HOM05D003970 ORTHO05D004615 2.2e-162 575.9 361 83.7
Gohir.A13G192500 Gossypium hirsutum HOM05D003970 ORTHO05D004615 6.5e-162 574.3 356 82.9
TAR636G0030 Trochodendron aralioides HOM05D003970 ORTHO05D004615 1.1e-161 573.5 362 78.7
FvH4_1g08120 Fragaria vesca HOM05D003970 ORTHO05D004615 1.5e-161 573.2 347 85.3
FAN19G1405 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.5e-161 573.2 347 85.3
FAN26G2539 Fragaria x ananassa HOM05D003970 ORTHO05D004615 2.5e-161 572.4 356 84.3
Thhalv10003454m.g Eutrema salsugineum HOM05D003970 ORTHO05D004615 4.2e-161 571.6 365 83.0
TAR623G1298 Trochodendron aralioides HOM05D003970 ORTHO05D004615 4.2e-161 571.6 362 77.9
Oeu035943.1 Olea europaea HOM05D003970 ORTHO05D004615 5.5e-161 571.2 365 81.6
Sp7g06850 Schrenkiella parvula HOM05D003970 ORTHO05D004615 9.4e-161 570.5 355 85.1
Carub.0007s3126 Capsella rubella HOM05D003970 ORTHO05D004615 1.6e-160 569.7 361 84.2
QL02p061312 Quercus lobata HOM05D003970 ORTHO05D004615 2.1e-160 569.3 355 83.4
QL02p061443 Quercus lobata HOM05D003970 ORTHO05D004615 2.1e-160 569.3 355 83.4
AT5G35460 Arabidopsis thaliana HOM05D003970 ORTHO05D004615 4.7e-160 568.2 359 84.1
CsaV3_1G040740 Cucumis sativus L. HOM05D003970 ORTHO05D004615 4.7e-160 568.2 356 82.3
CARHR217480 Cardamine hirsuta HOM05D003970 ORTHO05D004615 6.1e-160 567.8 366 84.2
A04p09740 Brassica napus HOM05D003970 ORTHO05D004615 1.0e-159 567.0 361 83.9
BraA04t16636Z Brassica rapa HOM05D003970 ORTHO05D004615 1.0e-159 567.0 361 83.9
Sc18g0002350 Simmondsia chinensis HOM05D003970 ORTHO05D004615 3.0e-159 565.5 349 80.5
MELO3C015502.2 Cucumis melo HOM05D003970 ORTHO05D004615 4.0e-159 565.1 356 82.6
THA.LOC104808900 Tarenaya hassleriana HOM05D003970 ORTHO05D004615 4.0e-159 565.1 351 84.3
Glyma.13G107500 Glycine max HOM05D003970 ORTHO05D004615 8.8e-159 563.9 362 81.5
Glyma.17G051800 Glycine max HOM05D003970 ORTHO05D004615 8.8e-159 563.9 364 80.5
Eucgr.C03403 Eucalyptus grandis HOM05D003970 ORTHO05D004615 2.0e-158 562.8 365 75.9
Cfa003038 Carpinus fangiana HOM05D003970 ORTHO05D004615 3.3e-158 562.0 361 83.1
Aqoxy7G03992 Aquilegia oxysepala HOM05D003970 ORTHO05D004615 4.4e-158 561.6 351 81.8
PSO210G0608 Papaver somniferum HOM05D003970 ORTHO05D004615 5.7e-158 561.2 352 83.5
SGA_v2.0_scaffold23G10060 Striga asiatica HOM05D003970 ORTHO05D004615 7.5e-158 560.8 355 82.3
MSTRG.26453 Avicennia marina HOM05D003970 ORTHO05D004615 9.7e-158 560.5 362 80.7
PSO210G0448 Papaver somniferum HOM05D003970 ORTHO05D004615 1.3e-157 560.1 352 83.2
Actinidia29916 Actinidia chinensis HOM05D003970 ORTHO05D004615 1.7e-157 559.7 361 77.8
VMungo1215G1067 Vigna mungo HOM05D003970 ORTHO05D004615 1.7e-157 559.7 354 79.4
Phvul.003G133400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 2.2e-157 559.3 361 79.8
Potri.006G145600 Populus trichocarpa HOM05D003970 ORTHO05D004615 3.7e-157 558.5 365 77.8
Sabra18G0047600 Salix brachista HOM05D003970 ORTHO05D004615 3.7e-157 558.5 382 79.3
DCAR_024721 Daucus carota HOM05D003970 ORTHO05D004615 4.8e-157 558.1 363 81.0
C04p43240 Brassica napus HOM05D003970 ORTHO05D004615 8.2e-157 557.4 347 85.9
AUR62029007 Chenopodium quinoa HOM05D003970 ORTHO05D004615 1.8e-156 556.2 366 77.6
BcaB02g08054 Brassica carinata HOM05D003970 ORTHO05D004615 4.1e-156 555.1 358 82.1
AUR62025170 Chenopodium quinoa HOM05D003970 ORTHO05D004615 4.1e-156 555.1 360 78.3
Hma1.2p1_0672F.1_g200850 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 4.1e-156 555.1 361 78.9
SalBow1G5979 Salvia bowleyana HOM05D003970 ORTHO05D004615 5.3e-156 554.7 358 81.0
BcaC02g09478 Brassica carinata HOM05D003970 ORTHO05D004615 7.0e-156 554.3 347 85.6
BolC4t25903H Brassica oleracea HOM05D003970 ORTHO05D004615 7.0e-156 554.3 347 85.6
Migut.L01537 Erythranthe guttata HOM05D003970 ORTHO05D004615 7.0e-156 554.3 362 80.7
arahy.Tifrunner.gnm1.ann1.B9Q4RC Arachis hypogaea HOM05D003970 ORTHO05D004615 1.6e-155 553.1 357 77.3
arahy.Tifrunner.gnm1.ann1.7IK41Y Arachis hypogaea HOM05D003970 ORTHO05D004615 2.7e-155 552.4 357 77.3
Migut.J00961 Erythranthe guttata HOM05D003970 ORTHO05D004615 2.7e-155 552.4 359 75.8
Peaxi162Scf00724g00210 Petunia axillaris HOM05D003970 ORTHO05D004615 2.7e-155 552.4 353 76.2
Sed0004197 Sechium edule HOM05D003970 ORTHO05D004615 4.5e-155 551.6 356 81.2
vmacro17169 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 5.9e-155 551.2 362 79.0
CSS0040908 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 1.7e-154 549.7 368 79.1
SGA_v2.0_scaffold21G09454 Striga asiatica HOM05D003970 ORTHO05D004615 1.7e-154 549.7 377 76.9
EL10Ac8g19144 Beta vulgaris HOM05D003970 ORTHO05D004615 3.8e-154 548.5 357 81.8
Gohir.D06G073400 Gossypium hirsutum HOM05D003970 ORTHO05D004615 5.0e-154 548.1 365 79.5
Lsat_1_v5_gn_5_142140 Lactuca sativa HOM05D003970 ORTHO05D004615 5.0e-154 548.1 364 75.8
Gorai.010G085700 Gossypium raimondii HOM05D003970 ORTHO05D004615 8.5e-154 547.4 365 79.2
Sabra06G0115100 Salix brachista HOM05D003970 ORTHO05D004615 8.5e-154 547.4 359 81.9
Lj4g0010970 Lotus japonicus HOM05D003970 ORTHO05D004615 1.1e-153 547.0 358 76.3
Nn6g35566 Nelumbo nucifera HOM05D003970 ORTHO05D004615 1.1e-153 547.0 357 79.0
Nitab4.5_0006849g0020 Nicotiana tabacum HOM05D003970 ORTHO05D004615 4.2e-153 545.0 355 74.4
Lalb_Chr08g0232451 Lupinus albus HOM05D003970 ORTHO05D004615 5.5e-153 544.7 355 76.1
Rhsim05G0013300 Rhododendron simsii HOM05D003970 ORTHO05D004615 5.5e-153 544.7 363 78.0
Gohir.A06G074600 Gossypium hirsutum HOM05D003970 ORTHO05D004615 7.2e-153 544.3 365 78.9
PGR044G0734 Punica granatum HOM05D003970 ORTHO05D004615 7.2e-153 544.3 301 86.4
Actinidia25226 Actinidia chinensis HOM05D003970 ORTHO05D004615 4.7e-152 541.6 360 79.4
CDE05G2698 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 8.0e-152 540.8 344 77.9
HanXRQChr10g0319561 Helianthus annuus HOM05D003970 ORTHO05D004615 8.0e-152 540.8 365 74.5
Nitab4.5_0001488g0140 Nicotiana tabacum HOM05D003970 ORTHO05D004615 1.0e-151 540.4 362 74.9
PGSC0003DMG400020950 Solanum tuberosum HOM05D003970 ORTHO05D004615 1.4e-151 540.0 362 72.9
Solyc07g041160.3 Solanum lycopersicum HOM05D003970 ORTHO05D004615 1.8e-151 539.7 362 73.2
ECA234G3560 Erigeron canadensis HOM05D003970 ORTHO05D004615 2.3e-151 539.3 363 75.2
Sopen07g020420 Solanum pennellii HOM05D003970 ORTHO05D004615 2.3e-151 539.3 362 72.9
Aa31sc339G40 Aethionema arabicum HOM05D003970 ORTHO05D004615 4.0e-151 538.5 370 74.1
CAN.G33.23 Capsicum annuum HOM05D003970 ORTHO05D004615 4.0e-151 538.5 355 73.5
MBI05_g23628_MAGBIO Magnolia biondii HOM05D003970 ORTHO05D004615 5.2e-151 538.1 334 82.6
Lj6g0022796 Lotus japonicus HOM05D003970 ORTHO05D004615 8.8e-151 537.3 352 75.0
Lj4A288T21 Lonicera japonica HOM05D003970 ORTHO05D004615 1.2e-150 537.0 310 85.2
Actinidia39693 Actinidia chinensis HOM05D003970 ORTHO05D004615 9.8e-150 533.9 371 76.8
VMungo1309G1594 Vigna mungo HOM05D003970 ORTHO05D004615 4.8e-149 531.6 354 73.7
ClCG03G015300 Citrullus lanatus HOM05D003970 ORTHO05D004615 8.3e-149 530.8 446 66.4
Peaxi162Scf00219g00019 Petunia axillaris HOM05D003970 ORTHO05D004615 1.1e-148 530.4 377 69.8
Psat1g133240 Pisum sativum HOM05D003970 ORTHO05D004615 1.4e-148 530.0 310 82.6
Glyma.15G173000 Glycine max HOM05D003970 ORTHO05D004615 2.4e-148 529.3 360 72.5
Medtr2g040600 Medicago truncatula HOM05D003970 ORTHO05D004615 7.0e-148 527.7 352 74.1
Ca_13142_v3 Cicer arietinum L. HOM05D003970 ORTHO05D004615 2.0e-147 526.2 310 82.3
Glyma.09G067100 Glycine max HOM05D003970 ORTHO05D004615 3.5e-147 525.4 350 73.7
vmacro06308 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 5.9e-147 524.6 336 79.5
Cc06_g11850 Coffea canephora HOM05D003970 ORTHO05D004615 1.0e-146 523.9 356 75.8
Os01g0585100 Oryza sativa ssp. japonica HOM05D003970 ORTHO05D004615 1.7e-146 523.1 306 81.4
Hund08710 Selenicereus undatus HOM05D003970 ORTHO05D004615 9.5e-145 517.3 357 76.5
Phvul.009G229400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 1.6e-144 516.5 303 81.2
Zm00001eb356980 Zea mays HOM05D003970 ORTHO05D004615 5.2e-143 511.5 306 79.1
ECA236G0065 Erigeron canadensis HOM05D003970 ORTHO05D004615 1.2e-142 510.4 356 72.2
TPR.G9462 Trifolium pratense HOM05D003970 ORTHO05D004615 2.2e-141 506.1 340 72.6
Medtr4g125680 Medicago truncatula HOM05D003970 ORTHO05D004615 3.7e-141 505.4 286 84.3
TPR.G18106 Trifolium pratense HOM05D003970 ORTHO05D004615 4.9e-141 505.0 298 81.5
ATR0051G045 Amborella trichopoda HOM05D003970 ORTHO05D004615 6.3e-141 504.6 311 80.1
HanXRQChr04g0126061 Helianthus annuus HOM05D003970 ORTHO05D004615 3.1e-140 502.3 365 70.4
TAR624G1217 Trochodendron aralioides HOM05D003970 ORTHO05D004615 5.9e-139 498.0 362 74.0
arahy.Tifrunner.gnm1.ann1.EC17FL Arachis hypogaea HOM05D003970 ORTHO05D004615 7.8e-139 497.7 341 72.7
Oeu000306.1 Olea europaea HOM05D003970 ORTHO05D004615 3.3e-137 492.3 363 74.1
Gohir.D13G197975 Gossypium hirsutum HOM05D003970 ORTHO05D004615 8.0e-136 487.6 303 83.8
BcaNung06959 Brassica carinata HOM05D003970 ORTHO05D004615 1.8e-135 486.5 346 77.7
GSVIVG01015145001 Vitis vinifera HOM05D003970 ORTHO05D004615 8.9e-135 484.2 292 86.6
Duzib150G0174 Durio zibethinus HOM05D003970 ORTHO05D004615 3.4e-134 482.3 359 73.8
HPP92_005531 Vanilla planifolia HOM05D003970 ORTHO05D004615 1.7e-133 479.9 354 72.6
Lsat_1_v5_gn_8_86281 Lactuca sativa HOM05D003970 ORTHO05D004615 1.2e-131 473.8 391 64.2
BcaB06g26940 Brassica carinata HOM05D003970 ORTHO05D004615 3.6e-128 462.2 307 76.2
Hma1.2p1_0169F.1_g074770 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 3.1e-127 459.1 354 68.9
Zm00001eb160510 Zea mays HOM05D003970 ORTHO05D004615 1.5e-126 456.8 271 79.3
Haze_25957 Corylus avellana HOM05D003970 ORTHO05D004615 3.4e-126 455.7 374 65.8
Mapoly0061s0008 Marchantia polymorpha HOM05D003970 ORTHO05D004615 9.2e-124 447.6 308 67.2
unitig_26.g9177 Utricularia gibba HOM05D003970 ORTHO05D004615 1.1e-121 440.7 298 69.1
Ah.14g085030 Amaranthus hybridus HOM05D003970 ORTHO05D004615 3.3e-121 439.1 360 66.7
SMO169G0099 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 1.8e-119 433.3 298 67.8
Rhsim03G0230700 Rhododendron simsii HOM05D003970 ORTHO05D004615 4.4e-118 428.7 356 66.6
CDE05G3050 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 1.4e-116 423.7 240 84.6
Pp3c3_9180 Physcomitrium patens HOM05D003970 ORTHO05D004615 7.1e-116 421.4 298 65.4
Pp3c2_27340 Physcomitrium patens HOM05D003970 ORTHO05D004615 1.2e-115 420.6 300 66.3
AagrBONN_evm.TU.Sc2ySwM_340.231 Anthoceros agrestis HOM05D003970 ORTHO05D004615 1.3e-114 417.2 299 65.6
Cpa.g.sc28.103 Carica papaya HOM05D003970 ORTHO05D004615 6.2e-112 408.3 223 88.8
SMO271G0136 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 2.4e-111 406.4 313 62.3
CSS0012417 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 2.2e-109 399.8 363 65.3
arahy.Tifrunner.gnm1.ann1.I25TD2 Arachis hypogaea HOM05D003970 ORTHO05D004615 2.1e-107 393.3 401 54.6
PGSC0003DMG400019544 Solanum tuberosum HOM05D003970 ORTHO05D004615 2.5e-97 359.8 220 79.1
CBR_g16039 Chara braunii HOM05D003970 ORTHO05D004615 2.9e-93 346.3 300 57.7
AagrBONN_evm.TU.Sc2ySwM_340.377 Anthoceros agrestis HOM05D003970 ORTHO05D004615 4.5e-86 322.4 211 71.1
PSO017G0759 Papaver somniferum HOM05D003970 ORTHO05D004615 1.9e-81 307.0 243 67.5
RcHm_v2.0_Chr1g0313941 Rosa chinensis HOM05D003970 ORTHO05D004615 4.2e-68 262.7 150 83.3
Ah.09g231260 Amaranthus hybridus HOM05D003970 ORTHO05D004615 1.4e-66 257.7 312 51.0
SEGI_24858 Sequoiadendron giganteum HOM05D003970 ORTHO05D004615 4.8e-56 222.6 171 64.9
Cc02_g26660 Coffea canephora HOM05D003970 ORTHO05D004615 4.5e-54 216.1 170 69.4
Medtr2g039830 Medicago truncatula HOM05D003970 ORTHO05D004615 3.0e-42 176.8 200 51.5
Cre03.g207351 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 7.5e-33 145.6 294 31.6
Zm00001eb362060 Zea mays HOM05D003970 ORTHO05D004615 6.3e-32 142.5 96 72.9
Medtr2g039840 Medicago truncatula HOM05D003970 ORTHO05D004615 2.8e-27 127.1 99 64.6
MCO07G676 Micromonas commoda HOM05D003970 ORTHO05D004615 1.4e-26 124.8 335 29.6
PRCOL_00002316 Prasinoderma coloniale HOM05D003970 ORTHO05D004615 7.5e-25 119.0 298 29.9
TPR.G277 Trifolium pratense HOM05D003970 ORTHO05D004615 2.7e-22 110.5 65 78.5
Nitab4.5_0003493g0050 Nicotiana tabacum HOM05D003970 ORTHO05D004615 7.8e-22 109.0 235 35.7
COL.COLO4_18144 Corchorus olitorius HOM05D003970 ORTHO05D004615 2.1e-19 100.9 88 83.0
Cpa.g.sc28.102 Carica papaya HOM05D003970 ORTHO05D004615 4.0e-18 96.7 77 85.7
Zm00001eb242980 Zea mays HOM05D003970 ORTHO05D004615 1.2e-17 95.1 68 69.1
Zm00001eb304220 Zea mays HOM05D003970 ORTHO05D004615 1.2e-17 95.1 68 69.1
Zm00001eb122080 Zea mays HOM05D003970 ORTHO05D004615 2.6e-17 94.0 68 69.1
Cre14.g620200 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 3.7e-16 90.1 377 24.9
COL.COLO4_18145 Corchorus olitorius HOM05D003970 ORTHO05D004615 3.7e-16 90.1 57 78.9
Medtr1g008180 Medicago truncatula HOM05D003970 ORTHO05D004615 6.4e-16 89.4 59 71.2
Cfa024865 Carpinus fangiana HOM05D003970 ORTHO05D124560 1.1e-12 78.6 108 36.1
RcHm_v2.0_Chr1g0340041 Rosa chinensis HOM05D003970 ORTHO05D004615 9.8e-09 65.5 33 84.8
QL02p061328 Quercus lobata HOM05D000001 ORTHO05D000003 3.7e-08 63.5 49 63.3
Cpa.g.c48203 Carica papaya HOM05D003970 ORTHO05D004615 1.1e-07 62.0 59 83.1
Zm00001eb043210 Zea mays HOM05D008270 ORTHO05D010684 1.2e-06 58.5 41 68.3
Zm00001eb198340 Zea mays HOM05D003970 ORTHO05D004615 2.1e-06 57.8 41 65.9
Zm00001eb372010 Zea mays HOM05D008270 ORTHO05D010684 2.7e-06 57.4 39 69.2


User provided reference genes

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