Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 1.8e-212 742.3 370 100.0
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 4.9e-165 584.7 370 79.5
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 1.4e-159 566.6 370 75.9
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 4.9e-157 558.1 370 75.7
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 2.4e-156 555.8 370 76.2
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 4.2e-156 555.1 370 75.7
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 4.6e-155 551.6 370 75.1
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 1.5e-153 546.6 372 73.4
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 3.3e-153 545.4 371 73.0
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 7.4e-153 544.3 372 74.2
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.3e-152 543.5 371 72.8
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.8e-151 539.7 371 73.0
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 4.0e-151 538.5 370 73.0
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 5.3e-151 538.1 370 74.6
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 6.9e-151 537.7 370 73.5
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 3.4e-150 535.4 370 72.7
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 5.8e-150 534.6 371 72.2
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 1.0e-149 533.9 370 73.2
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 1.9e-148 529.6 370 70.8
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 2.7e-147 525.8 370 70.8
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 4.6e-147 525.0 370 70.8
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 6.0e-147 524.6 379 72.6
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 5.1e-146 521.5 370 71.4
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 6.7e-146 521.2 370 75.9
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 9.6e-145 517.3 370 70.3
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 1.6e-144 516.5 370 70.8
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 3.7e-144 515.4 370 70.0
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 1.1e-143 513.8 369 69.1
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 1.8e-143 513.1 371 71.2
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 2.4e-143 512.7 371 70.6
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 6.9e-143 511.1 370 70.5
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 1.5e-142 510.0 370 70.3
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 1.0e-141 507.3 376 69.1
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 1.0e-141 507.3 370 68.6
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 5.0e-141 505.0 378 67.7
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 3.5e-139 498.8 375 67.2
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 3.5e-139 498.8 370 67.8
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 7.9e-139 497.7 370 68.4
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 7.9e-139 497.7 369 69.4
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.0e-138 497.3 367 68.7
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.0e-138 497.3 367 68.7
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 6.7e-138 494.6 370 68.4
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 6.7e-138 494.6 370 68.1
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 3.3e-137 492.3 370 68.9
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 4.3e-137 491.9 370 66.2
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 8.2e-136 487.6 370 66.2
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 1.1e-135 487.3 370 69.2
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 4.5e-134 481.9 376 65.4
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 1.0e-133 480.7 372 66.1
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 1.3e-133 480.3 371 66.0
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 2.2e-133 479.6 353 70.5
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 3.2e-132 475.7 371 66.3
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 1.2e-131 473.8 361 66.5
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 6.1e-131 471.5 350 70.6
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 6.1e-131 471.5 373 64.1
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 6.1e-131 471.5 370 63.5
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 1.8e-130 469.9 371 63.9
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 1.5e-129 466.8 372 65.3
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 2.0e-129 466.5 349 67.9
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 1.3e-128 463.8 414 59.7
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.8e-128 462.6 370 62.2
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 4.8e-128 461.8 370 63.8
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 1.4e-127 460.3 375 63.5
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 3.1e-127 459.1 348 69.3
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 3.1e-127 459.1 349 69.9
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 2.6e-126 456.1 370 62.4
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 3.4e-126 455.7 370 61.6
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 1.7e-125 453.4 374 65.0
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 2.5e-124 449.5 379 63.6
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 4.2e-124 448.7 377 63.9
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 4.2e-124 448.7 401 59.4
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 1.2e-123 447.2 374 61.2
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 1.4e-122 443.7 375 63.2
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 3.0e-122 442.6 374 61.8
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 3.9e-122 442.2 355 63.1
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 1.1e-121 440.7 370 61.4
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 3.3e-121 439.1 329 68.1
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 4.4e-121 438.7 374 60.7
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 5.7e-121 438.3 380 61.8
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 7.4e-121 438.0 380 61.8
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 7.4e-121 438.0 384 62.0
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 1.3e-120 437.2 371 60.6
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 4.8e-120 435.3 382 61.0
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 6.3e-120 434.9 326 67.8
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 6.3e-120 434.9 302 74.2
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 6.3e-120 434.9 359 61.6
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 8.2e-120 434.5 374 62.0
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 1.1e-119 434.1 387 60.2
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 1.8e-119 433.3 379 62.3
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 2.4e-119 433.0 382 61.0
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 3.1e-119 432.6 372 63.4
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 9.1e-119 431.0 347 64.8
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 2.0e-118 429.9 381 60.9
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 2.0e-118 429.9 382 60.5
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 1.7e-117 426.8 385 60.0
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 2.2e-117 426.4 386 59.8
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 5.0e-117 425.2 347 63.4
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 6.5e-117 424.9 385 60.0
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 2.1e-115 419.9 356 61.8
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 2.7e-115 419.5 353 61.5
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 8.0e-115 417.9 335 66.0
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 6.7e-114 414.8 381 59.8
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 2.6e-113 412.9 370 55.1
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 2.8e-112 409.5 370 55.7
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 4.8e-112 408.7 321 63.9
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 4.8e-112 408.7 370 54.9
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 8.2e-112 407.9 371 58.2
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 1.1e-108 397.5 355 59.7
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 1.5e-108 397.1 371 55.8
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 7.2e-108 394.8 360 59.4
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 2.3e-106 389.8 361 58.4
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 3.0e-106 389.4 332 62.7
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 1.5e-105 387.1 323 62.5
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 3.4e-105 386.0 370 52.7
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 3.7e-104 382.5 394 52.0
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 8.3e-104 381.3 384 53.4
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 5.4e-103 378.6 388 53.9
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 5.9e-102 375.2 302 63.6
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 3.8e-101 372.5 346 55.2
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 5.2e-90 335.5 370 50.5
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 3.9e-85 319.3 216 72.2
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 8.6e-85 318.2 338 50.6
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 1.6e-83 313.9 479 42.0
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 6.8e-82 308.5 384 44.3
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 3.4e-81 306.2 300 55.0
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 7.5e-81 305.1 302 58.3
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 3.0e-77 293.1 241 63.1
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 7.3e-76 288.5 273 57.9
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 2.0e-73 280.4 415 41.2
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 4.4e-73 279.3 287 54.7
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 9.8e-73 278.1 387 39.8
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 1.9e-68 263.8 259 56.0
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 4.4e-65 252.7 222 59.5
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 7.6e-65 251.9 191 61.3
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.9e-63 247.3 260 50.4
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 5.4e-63 245.7 241 56.0
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 1.1e-60 238.0 392 36.2
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 6.2e-59 232.3 255 52.2
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 4.9e-56 222.6 341 38.1
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 4.3e-52 209.5 213 55.9
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 4.4e-49 199.5 391 33.0
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 4.9e-48 196.1 137 67.9
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 6.4e-48 195.7 158 62.7
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.0e-45 188.3 115 76.5
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 8.2e-27 125.6 74 78.4
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 5.3e-26 122.9 149 50.3
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 2.6e-25 120.6 432 25.0
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 1.8e-21 107.8 200 30.5
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 2.2e-19 100.9 120 46.7
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 9.0e-18 95.5 73 68.5
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 4.6e-14 83.2 42 90.5
Hund16967 Selenicereus undatus HOM05D004815 ORTHO05D005742 7.4e-12 75.9 85 50.6
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 4.1e-10 70.1 51 68.6
MBI11_g13051_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 1.7e-08 64.7 62 53.2
C07p07230 Brassica napus HOM05D004815 ORTHO05D005742 2.7e-06 57.4 59 49.2


User provided reference genes

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