Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10020460m.g Citrus clementina HOM05D008311 ORTHO05D010526 1.1e-223 779.6 402 100.0
GSVIVG01024350001 Vitis vinifera HOM05D008311 ORTHO05D010526 1.1e-154 550.4 405 68.9
TAR629G0038 Trochodendron aralioides HOM05D008311 ORTHO05D010526 8.8e-152 540.8 391 69.6
Cfa016060 Carpinus fangiana HOM05D008311 ORTHO05D010526 2.6e-151 539.3 401 69.8
Aqoxy4G02584 Aquilegia oxysepala HOM05D008311 ORTHO05D010526 1.8e-149 533.1 397 67.3
Actinidia08755 Actinidia chinensis HOM05D008311 ORTHO05D010526 3.5e-148 528.9 387 68.5
Thecc.05G218800 Theobroma cacao HOM05D008311 ORTHO05D010526 4.7e-145 518.5 399 69.2
Haze_00388 Corylus avellana HOM05D008311 ORTHO05D010526 2.0e-143 513.1 391 68.5
Atru.chr12.1923 Acer truncatum HOM05D008311 ORTHO05D010526 4.4e-143 511.9 389 70.7
Dinv29140 Davidia involucrata HOM05D008311 ORTHO05D010526 3.7e-142 508.8 380 68.4
MBI04_g20345_MAGBIO Magnolia biondii HOM05D008311 ORTHO05D010526 1.2e-140 503.8 390 67.2
MD07G1310100 Malus domestica HOM05D008311 ORTHO05D010526 4.3e-138 495.4 396 65.4
Nn3g20131 Nelumbo nucifera HOM05D008311 ORTHO05D010526 4.3e-138 495.4 391 63.4
QL09p022981 Quercus lobata HOM05D008311 ORTHO05D010526 3.6e-137 492.3 488 56.6
Manes.09G128000 Manihot esculenta HOM05D008311 ORTHO05D010526 5.2e-136 488.4 388 65.2
Gohir.A08G221662 Gossypium hirsutum HOM05D008311 ORTHO05D010526 1.5e-135 486.9 388 66.2
Gorai.004G256700 Gossypium raimondii HOM05D008311 ORTHO05D010526 4.1e-133 478.8 389 65.8
Prupe.2G328000 Prunus persica HOM05D008311 ORTHO05D010526 1.6e-132 476.9 378 66.9
Gohir.D08G241300 Gossypium hirsutum HOM05D008311 ORTHO05D010526 3.5e-132 475.7 389 65.6
Sed0001927 Sechium edule HOM05D008311 ORTHO05D010526 5.0e-131 471.9 389 63.0
Duzib128G1797 Durio zibethinus HOM05D008311 ORTHO05D010526 8.6e-131 471.1 389 65.6
Eucgr.A02984 Eucalyptus grandis HOM05D008311 ORTHO05D010526 2.8e-129 466.1 398 61.1
FAN10G1178 Fragaria x ananassa HOM05D008311 ORTHO05D010526 3.6e-129 465.7 394 61.4
CDE11G1038 Ceratophyllum demersum HOM05D008311 ORTHO05D010526 1.1e-125 454.1 394 57.9
CiPaw.05G215000 Carya illinoinensis HOM05D008311 ORTHO05D010526 7.8e-124 448.0 336 69.0
vmacro06529 Vaccinium macrocarpon HOM05D008311 ORTHO05D010526 6.6e-123 444.9 350 63.4
CsaV3_2G036620 Cucumis sativus L. HOM05D008311 ORTHO05D010526 7.3e-122 441.4 393 59.8
AUR62028199 Chenopodium quinoa HOM05D008311 ORTHO05D010526 4.7e-121 438.7 392 59.2
COL.COLO4_15199 Corchorus olitorius HOM05D008311 ORTHO05D010526 6.8e-120 434.9 395 62.8
ClCG09G017160 Citrullus lanatus HOM05D008311 ORTHO05D010526 6.0e-116 421.8 393 57.5
ATR0665G332 Amborella trichopoda HOM05D008311 ORTHO05D010526 1.1e-114 417.5 412 54.1
Lsat_1_v5_gn_8_108920 Lactuca sativa HOM05D008311 ORTHO05D010526 4.3e-114 415.6 394 55.6
CDE11G1017 Ceratophyllum demersum HOM05D008311 ORTHO05D010526 9.6e-114 414.5 394 53.3
DCAR_020420 Daucus carota HOM05D008311 ORTHO05D010526 1.4e-112 410.6 390 54.4
AUR62002082 Chenopodium quinoa HOM05D008311 ORTHO05D010526 8.9e-112 407.9 367 59.4
Zm00001eb429910 Zea mays HOM05D008311 ORTHO05D010526 4.0e-104 382.5 394 52.8
HPP92_005385 Vanilla planifolia HOM05D008311 ORTHO05D010526 2.9e-102 376.3 399 51.1
FAN03G2372 Fragaria x ananassa HOM05D008311 ORTHO05D010526 3.8e-102 375.9 411 52.1
THA.LOC104821739 Tarenaya hassleriana HOM05D008311 ORTHO05D010526 3.8e-102 375.9 353 57.5
Lj3A885T48 Lonicera japonica HOM05D008311 ORTHO05D010526 7.9e-100 368.2 404 52.5
RcHm_v2.0_Chr1g0384481 Rosa chinensis HOM05D008311 ORTHO05D010526 1.8e-99 367.1 312 63.8
HPP92_009011 Vanilla planifolia HOM05D008311 ORTHO05D010526 2.5e-98 363.2 412 48.3
EL10Ac3g05056 Beta vulgaris HOM05D008311 ORTHO05D010526 3.4e-95 352.8 387 49.4
MELO3C021863.2 Cucumis melo HOM05D008311 ORTHO05D010526 3.7e-89 332.8 292 61.0
Os04g0592500 Oryza sativa ssp. japonica HOM05D008311 ORTHO05D010526 5.3e-88 328.9 391 48.8
Pp3c16_5410 Physcomitrium patens HOM05D008311 ORTHO05D010526 1.1e-74 284.6 403 40.0
Zm00001eb201380 Zea mays HOM05D008311 ORTHO05D010526 1.4e-69 267.7 305 50.2
AagrBONN_evm.TU.Sc2ySwM_117.4008 Anthoceros agrestis HOM05D008311 ORTHO05D010526 4.4e-66 256.1 361 42.4
Zm00001eb341760 Zea mays HOM05D008311 ORTHO05D010526 1.1e-53 214.9 261 46.0
SEGI_24543 Sequoiadendron giganteum HOM05D008311 ORTHO05D010526 3.0e-51 206.8 261 45.2
Zm00001eb072300 Zea mays HOM05D008311 ORTHO05D010526 6.8e-35 152.5 150 53.3
SEGI_12661 Sequoiadendron giganteum HOM05D008311 ORTHO05D010526 2.0e-31 141.0 185 46.5
CSS0045669 Camellia sinensis var. sinensis HOM05D008311 ORTHO05D010526 2.4e-24 117.5 100 60.0
SEGI_19325 Sequoiadendron giganteum HOM05D008311 ORTHO05D010526 2.5e-21 107.5 133 48.9
SEGI_38800 Sequoiadendron giganteum HOM05D008311 ORTHO05D010526 8.0e-20 102.4 126 42.9
Zm00001eb106730 Zea mays HOM05D006823 ORTHO05D008608 1.9e-16 91.3 68 64.7
Potri.013G079301 Populus trichocarpa HOM05D008311 ORTHO05D010526 2.7e-15 87.4 64 70.3
Zm00001eb207330 Zea mays HOM05D008311 ORTHO05D010526 4.0e-11 73.6 75 52.0
Dinv07670 Davidia involucrata HOM05D008311 ORTHO05D183374 7.5e-10 69.3 51 70.6


User provided reference genes

Program Settings