Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10020454m.g Citrus clementina HOM05D005292 ORTHO05D006473 9.2e-234 813.1 402 100.0
Atru.chr9.1428 Acer truncatum HOM05D005292 ORTHO05D006473 1.6e-177 626.3 383 83.8
GSVIVG01004916001 Vitis vinifera HOM05D005292 ORTHO05D006473 3.5e-172 608.6 347 85.9
Duzib084G0213 Durio zibethinus HOM05D005292 ORTHO05D006473 2.2e-171 605.9 408 75.2
QL12p014915 Quercus lobata HOM05D005292 ORTHO05D006473 2.2e-171 605.9 403 76.2
CiPaw.11G147800 Carya illinoinensis HOM05D005292 ORTHO05D006473 6.5e-171 604.4 400 76.5
COL.COLO4_31983 Corchorus olitorius HOM05D005292 ORTHO05D006473 8.5e-171 604.0 408 75.2
CANSAT80G2034 Cannabis sativa HOM05D005292 ORTHO05D006473 2.3e-168 595.9 408 75.2
Thecc.03G261400 Theobroma cacao HOM05D005292 ORTHO05D006473 2.3e-168 595.9 408 75.2
Cfa012803 Carpinus fangiana HOM05D005292 ORTHO05D006473 3.3e-167 592.0 403 74.9
Cpa.g.sc29.95 Carica papaya HOM05D005292 ORTHO05D006473 3.1e-165 585.5 395 75.9
Gohir.D12G223000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.2e-164 583.6 406 73.2
Manes.02G033900 Manihot esculenta HOM05D005292 ORTHO05D006473 7.7e-164 580.9 404 75.2
TWI15G0139 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 3.8e-163 578.6 406 72.7
Gohir.D03G157800 Gossypium hirsutum HOM05D005292 ORTHO05D006473 5.0e-163 578.2 408 72.8
Gorai.008G239300 Gossypium raimondii HOM05D005292 ORTHO05D006473 5.5e-162 574.7 431 69.4
Gohir.A03G012000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 8.0e-161 570.9 407 71.7
CiPaw.12G105300 Carya illinoinensis HOM05D005292 ORTHO05D006473 1.0e-160 570.5 346 81.5
Lj4g0005126 Lotus japonicus HOM05D005292 ORTHO05D006473 1.2e-159 567.0 408 71.3
Potri.001G118000 Populus trichocarpa HOM05D005292 ORTHO05D006473 1.5e-159 566.6 397 74.8
Ca_12278_v3 Cicer arietinum L. HOM05D005292 ORTHO05D006473 3.4e-159 565.5 397 72.5
Prupe.5G079200 Prunus persica HOM05D005292 ORTHO05D006473 9.8e-159 563.9 402 72.6
Nn1g01261 Nelumbo nucifera HOM05D005292 ORTHO05D006473 1.7e-158 563.1 408 70.3
Gorai.003G166300 Gossypium raimondii HOM05D005292 ORTHO05D006473 4.8e-158 561.6 408 71.3
MD04G1079900 Malus domestica HOM05D005292 ORTHO05D006473 1.1e-157 560.5 379 74.1
Glyma.17G134700 Glycine max HOM05D005292 ORTHO05D006473 2.4e-157 559.3 347 80.4
Gorai.007G021400 Gossypium raimondii HOM05D005292 ORTHO05D006473 4.1e-157 558.5 410 71.5
TAR636G1323 Trochodendron aralioides HOM05D005292 ORTHO05D006473 5.4e-157 558.1 344 79.9
VMungo1215G1740 Vigna mungo HOM05D005292 ORTHO05D006473 7.0e-157 557.8 358 78.5
arahy.Tifrunner.gnm1.ann1.YRMJ3W Arachis hypogaea HOM05D005292 ORTHO05D006473 5.9e-156 554.7 368 76.1
arahy.Tifrunner.gnm1.ann1.VS5X7Y Arachis hypogaea HOM05D005292 ORTHO05D006473 7.7e-156 554.3 408 70.8
Phvul.003G214500 Phaseolus vulgaris HOM05D005292 ORTHO05D006473 1.3e-155 553.5 358 77.9
TPR.G37684 Trifolium pratense HOM05D005292 ORTHO05D006473 1.7e-155 553.1 397 71.0
Glyma.05G052500 Glycine max HOM05D005292 ORTHO05D006473 2.2e-155 552.7 366 76.5
Oeu016513.1 Olea europaea HOM05D005292 ORTHO05D006473 2.9e-155 552.4 405 70.6
Lalb_Chr05g0225431 Lupinus albus HOM05D005292 ORTHO05D006473 8.5e-155 550.8 345 79.1
Gohir.A11G020400 Gossypium hirsutum HOM05D005292 ORTHO05D006473 3.2e-154 548.9 408 70.1
Potri.003G114900 Populus trichocarpa HOM05D005292 ORTHO05D006473 2.1e-153 546.2 384 72.9
Sed0004099 Sechium edule HOM05D005292 ORTHO05D006473 4.7e-153 545.0 347 78.4
Gohir.D11G020100 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.8e-152 543.1 408 69.4
Medtr4g102260 Medicago truncatula HOM05D005292 ORTHO05D006473 5.2e-152 541.6 402 70.1
Dinv21573 Davidia involucrata HOM05D005292 ORTHO05D006473 6.8e-152 541.2 414 68.8
MSTRG.12063 Avicennia marina HOM05D005292 ORTHO05D006473 1.2e-151 540.4 324 79.9
Peaxi162Scf00271g00021 Petunia axillaris HOM05D005292 ORTHO05D006473 1.7e-150 536.6 391 70.6
CSS0004035 Camellia sinensis var. sinensis HOM05D005292 ORTHO05D006473 3.7e-150 535.4 421 66.5
CAN.G630.87 Capsicum annuum HOM05D005292 ORTHO05D006473 3.7e-150 535.4 388 70.6
Hma1.2p1_0367F.1_g137040 Hydrangea macrophylla HOM05D005292 ORTHO05D006473 3.7e-150 535.4 372 73.4
Eucgr.D01991 Eucalyptus grandis HOM05D005292 ORTHO05D006473 6.3e-150 534.6 327 80.4
CsaV3_5G003780 Cucumis sativus L. HOM05D005292 ORTHO05D006473 1.4e-149 533.5 389 70.7
Nitab4.5_0003534g0020 Nicotiana tabacum HOM05D005292 ORTHO05D006473 1.8e-149 533.1 397 69.5
PGR031G2306 Punica granatum HOM05D005292 ORTHO05D006473 1.8e-149 533.1 310 84.2
THA.LOC104813867 Tarenaya hassleriana HOM05D005292 ORTHO05D006473 1.8e-149 533.1 295 85.1
PSO782G2032 Papaver somniferum HOM05D005292 ORTHO05D006473 2.4e-149 532.7 321 80.7
Psat4g068120 Pisum sativum HOM05D005292 ORTHO05D006473 4.1e-149 531.9 344 78.5
Dinv39082 Davidia involucrata HOM05D005292 ORTHO05D006473 9.2e-149 530.8 410 67.1
RcHm_v2.0_Chr7g0201621 Rosa chinensis HOM05D005292 ORTHO05D006473 2.0e-148 529.6 400 70.8
Sopen08g027820 Solanum pennellii HOM05D005292 ORTHO05D006473 3.5e-148 528.9 343 75.5
Aqoxy7G00654 Aquilegia oxysepala HOM05D005292 ORTHO05D006473 5.9e-148 528.1 336 77.4
Solyc08g079450.3 Solanum lycopersicum HOM05D005292 ORTHO05D006473 5.9e-148 528.1 343 75.5
Lj8A255T56 Lonicera japonica HOM05D005292 ORTHO05D006473 1.0e-147 527.3 352 74.7
MBI12_g31646_MAGBIO Magnolia biondii HOM05D005292 ORTHO05D006473 1.3e-147 526.9 384 71.4
FAN18G3339 Fragaria x ananassa HOM05D005292 ORTHO05D006473 2.3e-147 526.2 412 68.9
FAN08G1347 Fragaria x ananassa HOM05D005292 ORTHO05D006473 2.9e-147 525.8 407 69.5
Cc08_g13210 Coffea canephora HOM05D005292 ORTHO05D006473 8.6e-147 524.2 359 75.8
CARHR254020 Cardamine hirsuta HOM05D005292 ORTHO05D006473 1.6e-145 520.0 294 83.7
ECA233G3282 Erigeron canadensis HOM05D005292 ORTHO05D006473 2.1e-145 519.6 353 75.4
Sc22g0000600 Simmondsia chinensis HOM05D005292 ORTHO05D006473 3.6e-145 518.8 318 78.9
FAN04G0899 Fragaria x ananassa HOM05D005292 ORTHO05D006473 4.7e-145 518.5 412 68.0
PSO478G4449 Papaver somniferum HOM05D005292 ORTHO05D006473 8.0e-145 517.7 321 78.8
Actinidia02093 Actinidia chinensis HOM05D005292 ORTHO05D006473 1.0e-144 517.3 412 66.3
Migut.A00832 Erythranthe guttata HOM05D005292 ORTHO05D006473 2.3e-144 516.2 289 84.8
Nitab4.5_0007591g0040 Nicotiana tabacum HOM05D005292 ORTHO05D006473 3.0e-144 515.8 288 84.4
FAN13G3324 Fragaria x ananassa HOM05D005292 ORTHO05D006473 4.0e-144 515.4 412 68.0
Hund14648 Selenicereus undatus HOM05D005292 ORTHO05D006473 8.9e-144 514.2 312 79.8
Sabra01G0090700 Salix brachista HOM05D005292 ORTHO05D006473 1.5e-143 513.5 493 59.4
Sp6g05330 Schrenkiella parvula HOM05D005292 ORTHO05D006473 1.5e-143 513.5 301 81.1
PGSC0003DMG400003959 Solanum tuberosum HOM05D005292 ORTHO05D006473 2.6e-143 512.7 393 68.4
SGA_v2.0_scaffold120G32820 Striga asiatica HOM05D005292 ORTHO05D006473 3.4e-143 512.3 375 70.7
EL10Ac5g12610 Beta vulgaris HOM05D005292 ORTHO05D006473 4.4e-143 511.9 331 74.9
Thhalv10028717m.g Eutrema salsugineum HOM05D005292 ORTHO05D006473 4.4e-143 511.9 394 67.5
AL6G47090 Arabidopsis lyrata HOM05D005292 ORTHO05D006473 1.3e-142 510.4 387 68.2
Gohir.A12G220700 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.3e-142 510.4 324 77.2
Carub.0006s3135 Capsella rubella HOM05D005292 ORTHO05D006473 2.2e-142 509.6 388 68.0
A03p29600 Brassica napus HOM05D005292 ORTHO05D006473 3.7e-142 508.8 289 83.4
Haze_08610 Corylus avellana HOM05D005292 ORTHO05D006473 4.9e-142 508.4 416 66.1
vmacro14043 Vaccinium macrocarpon HOM05D005292 ORTHO05D006473 1.4e-141 506.9 399 67.9
CDE09G1063 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 1.8e-141 506.5 348 69.8
AT4G12230 Arabidopsis thaliana HOM05D005292 ORTHO05D006473 5.4e-141 505.0 387 66.7
Aa31LG9G10310 Aethionema arabicum HOM05D005292 ORTHO05D006473 1.2e-140 503.8 372 70.2
BcaB01g02654 Brassica carinata HOM05D005292 ORTHO05D006473 2.7e-140 502.7 387 66.9
BcaC01g04601 Brassica carinata HOM05D005292 ORTHO05D006473 4.6e-140 501.9 390 67.9
HanXRQChr02g0046251 Helianthus annuus HOM05D005292 ORTHO05D006473 4.6e-140 501.9 310 78.4
ClCG01G003660 Citrullus lanatus HOM05D005292 ORTHO05D006473 2.3e-139 499.6 383 69.2
C03p35880 Brassica napus HOM05D005292 ORTHO05D006473 8.6e-139 497.7 391 67.8
BolC3t15896H Brassica oleracea HOM05D005292 ORTHO05D006473 8.6e-139 497.7 391 67.8
AUR62010507 Chenopodium quinoa HOM05D005292 ORTHO05D006473 8.6e-139 497.7 351 68.9
HanXRQChr07g0188671 Helianthus annuus HOM05D005292 ORTHO05D006473 1.1e-138 497.3 405 65.7
BraA03t12155Z Brassica rapa HOM05D005292 ORTHO05D006473 1.9e-138 496.5 390 67.7
SalBow1G6483 Salvia bowleyana HOM05D005292 ORTHO05D006473 3.3e-138 495.7 326 73.9
DCAR_006803 Daucus carota HOM05D005292 ORTHO05D006473 1.2e-137 493.8 343 72.6
TWI15G0397 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 3.1e-136 489.2 406 65.8
Os10g0169800 Oryza sativa ssp. japonica HOM05D005292 ORTHO05D006473 3.4e-135 485.7 337 69.4
Ah.12g058260 Amaranthus hybridus HOM05D005292 ORTHO05D006473 2.2e-134 483.0 372 65.6
Nn4g26373 Nelumbo nucifera HOM05D005292 ORTHO05D006473 2.9e-134 482.6 373 65.4
Zm00001eb026990 Zea mays HOM05D005292 ORTHO05D006473 2.0e-132 476.5 301 74.1
Ah.02g116220 Amaranthus hybridus HOM05D005292 ORTHO05D006473 4.6e-132 475.3 282 78.4
ATR0757G031 Amborella trichopoda HOM05D005292 ORTHO05D006473 1.3e-131 473.8 266 83.5
unitig_744.g24320 Utricularia gibba HOM05D005292 ORTHO05D006473 3.6e-129 465.7 376 63.3
Lsat_1_v5_gn_6_9841 Lactuca sativa HOM05D005292 ORTHO05D006473 4.7e-129 465.3 309 75.7
AUR62017394 Chenopodium quinoa HOM05D005292 ORTHO05D006473 1.8e-128 463.4 327 69.1
CDE11G0205 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 3.4e-127 459.1 325 68.6
HPP92_014608 Vanilla planifolia HOM05D005292 ORTHO05D006473 9.5e-122 441.0 333 67.6
SEGI_16146 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 2.2e-118 429.9 304 66.1
Duzib205G1434 Durio zibethinus HOM05D005292 ORTHO05D006473 8.6e-115 417.9 408 58.8
Rhsim07G0101700 Rhododendron simsii HOM05D005292 ORTHO05D006473 1.9e-114 416.8 358 61.7
Sabra03G0079600 Salix brachista HOM05D005292 ORTHO05D006473 5.2e-112 408.7 219 87.7
Pp3c6_20320 Physcomitrium patens HOM05D005292 ORTHO05D006473 5.8e-111 405.2 279 67.0
FvH4_5g00640 Fragaria vesca HOM05D005292 ORTHO05D006473 1.7e-110 403.7 348 65.5
SMO223G0031 Selaginella moellendorffii HOM05D005292 ORTHO05D006473 4.9e-110 402.1 274 67.2
Mapoly0066s0051 Marchantia polymorpha HOM05D005292 ORTHO05D006473 2.1e-108 396.7 272 66.5
AagrBONN_evm.TU.Sc2ySwM_368.248 Anthoceros agrestis HOM05D005292 ORTHO05D006473 3.1e-104 382.9 322 58.7
Oeu022319.3 Olea europaea HOM05D005292 ORTHO05D006473 1.8e-99 367.1 352 58.2
TAR629G1108 Trochodendron aralioides HOM05D005292 ORTHO05D006473 1.5e-98 364.0 183 90.2
Actinidia14462 Actinidia chinensis HOM05D005292 ORTHO05D006473 2.5e-90 336.7 336 56.2
Aa31LG11G5120 Aethionema arabicum HOM05D005292 ORTHO05D006473 4.6e-76 289.3 155 85.2
MD06G1074900 Malus domestica HOM05D005292 ORTHO05D006473 1.4e-72 277.7 147 84.4
Dinv37766 Davidia involucrata HOM05D005292 ORTHO05D006473 2.1e-68 263.8 273 57.9
Lsat_1_v5_gn_8_156781 Lactuca sativa HOM05D005292 ORTHO05D006473 1.2e-47 194.9 173 61.8
MELO3C005579.2 Cucumis melo HOM05D005292 ORTHO05D006473 6.5e-46 189.1 208 54.8
Lsat_1_v5_gn_8_88300 Lactuca sativa HOM05D005292 ORTHO05D006473 2.6e-42 177.2 216 46.8
Lsat_1_v5_gn_2_99060 Lactuca sativa HOM05D005292 ORTHO05D006473 3.4e-42 176.8 120 75.8
Lsat_1_v5_gn_8_99640 Lactuca sativa HOM05D005292 ORTHO05D006473 3.6e-36 156.8 161 54.7
SEGI_25328 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 4.7e-36 156.4 94 68.1
TAR636G3691 Trochodendron aralioides HOM05D005292 ORTHO05D006473 6.1e-36 156.0 127 65.4
SEGI_08273 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.0e-27 128.6 84 73.8
Cc08_g13200 Coffea canephora HOM05D005292 ORTHO05D006473 2.3e-27 127.5 66 83.3
MD06G1074800 Malus domestica HOM05D005292 ORTHO05D006473 3.0e-27 127.1 72 88.9
CDE11G1060 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 9.8e-26 122.1 66 80.3
Glyma.05G052200 Glycine max HOM05D005292 ORTHO05D006473 2.2e-25 120.9 138 51.4
TWI81G0363 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 4.3e-21 106.7 71 73.2
SEGI_15988 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 9.5e-21 105.5 66 72.7
Eucgr.C02046 Eucalyptus grandis HOM05D005292 ORTHO05D006473 3.7e-17 93.6 66 69.7
vmacro17465 Vaccinium macrocarpon HOM05D002883 ORTHO05D003116 7.8e-15 85.9 66 60.6
Peaxi162Scf00102g01237 Petunia axillaris HOM05D000023 ORTHO05D013611 2.3e-06 57.8 48 52.1


User provided reference genes

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