Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10020399m.g Citrus clementina HOM05D004141 ORTHO05D005416 1.7e-235 818.9 409 100.0
Atru.chr2.2126 Acer truncatum HOM05D004141 ORTHO05D005416 9.5e-202 706.8 409 84.1
Atru.chr3.1550 Acer truncatum HOM05D004141 ORTHO05D005416 2.0e-199 699.1 451 77.6
TWI31G0451 Tripterygium wilfordii HOM05D004141 ORTHO05D005416 2.5e-194 682.2 409 80.4
CSS0023821 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 1.2e-193 679.9 409 80.7
Thecc.07G117900 Theobroma cacao HOM05D004141 ORTHO05D005416 4.7e-193 677.9 409 80.4
COL.COLO4_17535 Corchorus olitorius HOM05D004141 ORTHO05D005416 5.2e-192 674.5 409 81.2
QL06p023676 Quercus lobata HOM05D004141 ORTHO05D005416 1.5e-191 672.9 409 80.7
Cpa.g.sc77.17 Carica papaya HOM05D004141 ORTHO05D005416 2.6e-191 672.2 409 79.7
Duzib213G0227 Durio zibethinus HOM05D004141 ORTHO05D005416 9.8e-191 670.2 411 80.3
Dinv15000 Davidia involucrata HOM05D004141 ORTHO05D005416 1.7e-190 669.5 409 79.2
TAR627G0990 Trochodendron aralioides HOM05D004141 ORTHO05D005416 1.1e-189 666.8 404 79.7
CANSAT78G1263 Cannabis sativa HOM05D004141 ORTHO05D005416 2.1e-188 662.5 409 79.7
CANSAT78G2476 Cannabis sativa HOM05D004141 ORTHO05D005416 3.5e-188 661.8 409 79.5
Gohir.D01G042710 Gossypium hirsutum HOM05D004141 ORTHO05D005416 6.0e-188 661.0 408 79.2
Gorai.002G054000 Gossypium raimondii HOM05D004141 ORTHO05D005416 6.0e-188 661.0 408 79.2
Potri.011G109000 Populus trichocarpa HOM05D004141 ORTHO05D005416 1.0e-187 660.2 402 79.9
Cfa017272 Carpinus fangiana HOM05D004141 ORTHO05D005416 8.6e-187 657.1 410 79.0
RcHm_v2.0_Chr5g0030771 Rosa chinensis HOM05D004141 ORTHO05D005416 1.5e-186 656.4 405 80.5
CiPaw.11G159700 Carya illinoinensis HOM05D004141 ORTHO05D005416 1.9e-186 656.0 410 79.0
CsaV3_4G008070 Cucumis sativus L. HOM05D004141 ORTHO05D005416 2.5e-186 655.6 409 78.0
Prupe.5G052700 Prunus persica HOM05D004141 ORTHO05D005416 2.5e-186 655.6 410 78.3
Actinidia18802 Actinidia chinensis HOM05D004141 ORTHO05D005416 1.6e-185 652.9 403 77.9
MD11G1264500 Malus domestica HOM05D004141 ORTHO05D005416 1.6e-185 652.9 409 78.7
Glyma.12G230400 Glycine max HOM05D004141 ORTHO05D005416 2.1e-185 652.5 409 78.7
Prupe.4G241400 Prunus persica HOM05D004141 ORTHO05D005416 2.1e-185 652.5 410 78.8
GSVIVG01014186001 Vitis vinifera HOM05D004141 ORTHO05D005416 8.1e-185 650.6 409 78.0
FvH4_3g18220 Fragaria vesca HOM05D004141 ORTHO05D005416 1.1e-184 650.2 405 80.2
TAR629G0569 Trochodendron aralioides HOM05D004141 ORTHO05D005416 8.9e-184 647.1 404 78.2
Hma1.2p1_1016F.1_g248060 Hydrangea macrophylla HOM05D004141 ORTHO05D005416 2.0e-183 646.0 409 76.0
Phvul.005G081600 Phaseolus vulgaris HOM05D004141 ORTHO05D005416 3.4e-183 645.2 409 77.3
VMungo1080G0359 Vigna mungo HOM05D004141 ORTHO05D005416 4.4e-183 644.8 409 77.5
Nn7g36869 Nelumbo nucifera HOM05D004141 ORTHO05D005416 7.5e-183 644.0 404 77.0
Eucgr.F01245 Eucalyptus grandis HOM05D004141 ORTHO05D005416 1.3e-182 643.3 402 77.9
MBI14_g32936_MAGBIO Magnolia biondii HOM05D004141 ORTHO05D005416 1.3e-182 643.3 409 76.5
FAN16G3678 Fragaria x ananassa HOM05D004141 ORTHO05D005416 4.9e-182 641.3 414 78.3
Lj6g0002556 Lotus japonicus HOM05D004141 ORTHO05D005416 4.9e-182 641.3 409 76.0
Lj3g0016162 Lotus japonicus HOM05D004141 ORTHO05D005416 1.4e-181 639.8 409 75.6
FAN11G2786 Fragaria x ananassa HOM05D004141 ORTHO05D005416 2.4e-181 639.0 424 76.7
Sopen06g033870 Solanum pennellii HOM05D004141 ORTHO05D005416 3.2e-181 638.6 409 74.8
Ah.16g104680 Amaranthus hybridus HOM05D004141 ORTHO05D005416 4.1e-181 638.3 409 75.1
Psat6g208960 Pisum sativum HOM05D004141 ORTHO05D005416 4.1e-181 638.3 401 77.1
CsaV3_7G010060 Cucumis sativus L. HOM05D004141 ORTHO05D005416 9.2e-181 637.1 401 76.6
Sc03g0010560 Simmondsia chinensis HOM05D004141 ORTHO05D005416 2.1e-180 636.0 409 75.1
Ca_10927_v3 Cicer arietinum L. HOM05D004141 ORTHO05D005416 3.5e-180 635.2 409 76.0
Sabra11G0096600 Salix brachista HOM05D004141 ORTHO05D005416 3.5e-180 635.2 432 72.9
PGSC0003DMG400030465 Solanum tuberosum HOM05D004141 ORTHO05D005416 3.5e-180 635.2 409 74.8
MELO3C016129.2 Cucumis melo HOM05D004141 ORTHO05D005416 6.0e-180 634.4 415 74.7
Lalb_Chr25g0285811 Lupinus albus HOM05D004141 ORTHO05D005416 6.0e-180 634.4 403 76.2
Rhsim04G0026700 Rhododendron simsii HOM05D004141 ORTHO05D005416 6.0e-180 634.4 441 71.2
Solyc06g082490.4 Solanum lycopersicum HOM05D004141 ORTHO05D005416 6.0e-180 634.4 409 74.3
AT1G78800 Arabidopsis thaliana HOM05D004141 ORTHO05D005416 7.8e-180 634.0 410 75.6
Carub.0002s2562 Capsella rubella HOM05D004141 ORTHO05D005416 7.8e-180 634.0 409 76.0
vmacro09491 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 1.3e-179 633.3 409 76.0
AUR62019583 Chenopodium quinoa HOM05D004141 ORTHO05D005416 1.7e-179 632.9 409 73.8
Glyma.13G269200 Glycine max HOM05D004141 ORTHO05D005416 1.7e-179 632.9 433 73.7
Sp5g33830 Schrenkiella parvula HOM05D004141 ORTHO05D005416 1.7e-179 632.9 404 76.5
Oeu061361.2 Olea europaea HOM05D004141 ORTHO05D005416 3.9e-179 631.7 409 74.8
Migut.H02002 Erythranthe guttata HOM05D004141 ORTHO05D005416 8.6e-179 630.6 409 72.6
AL2G39200 Arabidopsis lyrata HOM05D004141 ORTHO05D005416 1.9e-178 629.4 410 75.6
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 1.9e-178 629.4 404 76.5
FAN21G2932 Fragaria x ananassa HOM05D004141 ORTHO05D005416 7.3e-178 627.5 425 75.3
THA.LOC104812317 Tarenaya hassleriana HOM05D004141 ORTHO05D005416 7.3e-178 627.5 409 76.0
SGA_v2.0_scaffold130G34289 Striga asiatica HOM05D004141 ORTHO05D005416 9.5e-178 627.1 410 73.7
Aqoxy1G02012 Aquilegia oxysepala HOM05D004141 ORTHO05D005416 1.6e-177 626.3 404 76.2
SalBow7G1122 Salvia bowleyana HOM05D004141 ORTHO05D005416 1.6e-177 626.3 409 72.9
arahy.Tifrunner.gnm1.ann1.K2RFPE Arachis hypogaea HOM05D004141 ORTHO05D005416 2.1e-177 625.9 406 74.6
arahy.Tifrunner.gnm1.ann1.2ZZ8MX Arachis hypogaea HOM05D004141 ORTHO05D005416 3.6e-177 625.2 406 74.6
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 6.2e-177 624.4 392 76.8
DCAR_030174 Daucus carota HOM05D004141 ORTHO05D005416 8.1e-177 624.0 409 73.6
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 1.4e-176 623.2 406 74.6
Cc05_g11010 Coffea canephora HOM05D004141 ORTHO05D005416 1.4e-176 623.2 409 75.6
PSO017G5924 Papaver somniferum HOM05D004141 ORTHO05D005416 5.2e-176 621.3 401 75.1
PGR004G1319 Punica granatum HOM05D004141 ORTHO05D005416 6.8e-176 620.9 409 76.3
PGR117G0003 Punica granatum HOM05D004141 ORTHO05D005416 6.8e-176 620.9 409 76.3
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 1.2e-175 620.2 405 75.6
MSTRG.11343 Avicennia marina HOM05D004141 ORTHO05D005416 2.6e-175 619.0 410 73.2
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 2.6e-175 619.0 410 74.1
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 2.6e-175 619.0 410 74.1
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 7.6e-175 617.5 394 76.1
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 3.8e-174 615.1 402 74.4
ClCG07G010270 Citrullus lanatus HOM05D004141 ORTHO05D005416 3.8e-174 615.1 409 74.6
Peaxi162Scf00111g01467 Petunia axillaris HOM05D004141 ORTHO05D005416 1.1e-173 613.6 404 74.5
PSO170G2286 Papaver somniferum HOM05D004141 ORTHO05D005416 3.2e-173 612.1 401 73.6
Nitab4.5_0000383g0110 Nicotiana tabacum HOM05D004141 ORTHO05D005416 1.6e-172 609.8 403 74.7
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 2.7e-172 609.0 428 71.7
Thhalv10007837m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 6.0e-172 607.8 409 74.6
Rhsim02G0051200 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.7e-171 606.3 458 65.9
EL10Ac4g08353 Beta vulgaris HOM05D004141 ORTHO05D005416 3.3e-170 602.1 494 63.4
Peaxi162Scf00390g00331 Petunia axillaris HOM05D004141 ORTHO05D005416 3.3e-170 602.1 404 74.0
AUR62037553 Chenopodium quinoa HOM05D004141 ORTHO05D005416 5.6e-170 601.3 389 74.3
ECA232G4285 Erigeron canadensis HOM05D004141 ORTHO05D005416 2.1e-169 599.4 403 72.7
Actinidia35211 Actinidia chinensis HOM05D004141 ORTHO05D005416 1.8e-168 596.3 371 78.4
HanXRQChr15g0495231 Helianthus annuus HOM05D004141 ORTHO05D005416 2.4e-168 595.9 413 70.0
arahy.Tifrunner.gnm1.ann1.DJ268J Arachis hypogaea HOM05D004141 ORTHO05D005416 2.6e-167 592.4 434 67.7
Lj1C587G1 Lonicera japonica HOM05D004141 ORTHO05D005416 5.8e-167 591.3 407 72.2
Sed0017698 Sechium edule HOM05D004141 ORTHO05D005416 5.8e-167 591.3 444 67.8
Hund09287 Selenicereus undatus HOM05D004141 ORTHO05D005416 5.8e-167 591.3 413 70.9
Zm00001eb072460 Zea mays HOM05D004141 ORTHO05D005416 1.3e-166 590.1 392 72.4
HanXRQChr04g0118321 Helianthus annuus HOM05D004141 ORTHO05D005416 3.8e-166 588.6 400 71.0
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 4.2e-165 585.1 392 71.7
Manes.03G100400 Manihot esculenta HOM05D004141 ORTHO05D005416 2.1e-164 582.8 350 81.4
FAN25G0103 Fragaria x ananassa HOM05D004141 ORTHO05D005416 2.7e-164 582.4 406 73.4
HPP92_017867 Vanilla planifolia HOM05D004141 ORTHO05D005416 3.5e-164 582.0 397 71.8
ATR0807G029 Amborella trichopoda HOM05D004141 ORTHO05D005416 2.3e-163 579.3 402 71.6
Lsat_1_v5_gn_7_102521 Lactuca sativa HOM05D004141 ORTHO05D005416 8.7e-163 577.4 406 69.2
Duzib213G0637 Durio zibethinus HOM05D004141 ORTHO05D005416 6.2e-161 571.2 411 71.0
unitig_72.g29740 Utricularia gibba HOM05D004141 ORTHO05D005416 4.0e-160 568.5 429 65.3
Sed0020321 Sechium edule HOM05D004141 ORTHO05D005416 7.1e-157 557.8 350 77.4
SEGI_24046 Sequoiadendron giganteum HOM05D004141 ORTHO05D005416 2.7e-156 555.8 404 68.3
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 1.0e-155 553.9 358 73.2
unitig_746.g26536 Utricularia gibba HOM05D004141 ORTHO05D005416 5.1e-155 551.6 390 68.2
ECA240G0250 Erigeron canadensis HOM05D004141 ORTHO05D005416 6.4e-150 534.6 368 70.4
CSS0043357 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 7.9e-148 527.7 418 65.6
Dinv18368 Davidia involucrata HOM05D004141 ORTHO05D005416 3.3e-146 522.3 413 65.1
Pp3c12_4340 Physcomitrium patens HOM05D004141 ORTHO05D005416 2.6e-143 512.7 416 60.6
CSS0028209 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 6.5e-142 508.1 402 65.2
AagrBONN_evm.TU.Sc2ySwM_117.897 Anthoceros agrestis HOM05D004141 ORTHO05D005416 3.5e-140 502.3 417 60.2
Gohir.A01G053700 Gossypium hirsutum HOM05D004141 ORTHO05D005416 3.3e-138 495.7 309 78.3
Oeu031026.1 Olea europaea HOM05D004141 ORTHO05D005416 3.7e-137 492.3 389 65.3
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 4.1e-136 488.8 404 60.4
Mapoly0001s0113 Marchantia polymorpha HOM05D004141 ORTHO05D005416 7.4e-130 468.0 395 59.0
Thhalv10019736m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 8.5e-126 454.5 410 58.3
SHI08479 Sapria himalayana HOM05D004141 ORTHO05D000023 1.0e-118 431.0 366 62.8
Potri.001G393000 Populus trichocarpa HOM05D004141 ORTHO05D005416 2.9e-118 429.5 368 63.0
PRCOL_00006028 Prasinoderma coloniale HOM05D004141 ORTHO05D005416 1.2e-106 391.0 410 51.0
TPR.G5502 Trifolium pratense HOM05D004141 ORTHO05D005416 3.7e-105 386.0 255 74.1
MCO01G083 Micromonas commoda HOM05D004141 ORTHO05D005416 1.0e-102 377.9 426 48.6
Haze_09318 Corylus avellana HOM05D004141 ORTHO05D005416 2.5e-101 373.2 276 70.3
vmacro11945 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 4.7e-100 369.0 367 56.1
DCAR_013161 Daucus carota HOM05D004141 ORTHO05D005416 2.2e-97 360.1 255 71.0
Cre02.g095147 Chlamydomonas reinhardtii HOM05D004141 ORTHO05D005416 1.8e-96 357.1 440 47.3
CARHR072350 Cardamine hirsuta HOM05D004141 ORTHO05D005416 2.4e-96 356.7 209 80.4
Haze_26741 Corylus avellana HOM05D004141 ORTHO05D005416 5.9e-95 352.1 408 48.8
CAN.G874.81 Capsicum annuum HOM05D004141 ORTHO05D005416 1.2e-92 344.4 209 77.0
C03p92790 Brassica napus HOM05D004141 ORTHO05D005416 2.8e-92 343.2 202 81.2
CBR_g988 Chara braunii HOM05D004141 ORTHO05D005416 1.6e-79 300.8 454 39.2
Rhsim12G0175600 Rhododendron simsii HOM05D004141 ORTHO05D005416 4.6e-79 299.3 410 43.2
Ciclev10022380m.g Citrus clementina HOM05D004141 ORTHO05D005416 3.3e-77 293.1 254 64.2
Ciclev10022599m.g Citrus clementina HOM05D004141 ORTHO05D005416 1.2e-71 274.6 194 75.3
Rhsim08G0243200 Rhododendron simsii HOM05D004141 ORTHO05D005416 2.7e-71 273.5 291 52.6
Cfa025499 Carpinus fangiana HOM05D004141 ORTHO05D005416 9.9e-66 255.0 434 39.2
CAN.G4738.1 Capsicum annuum HOM05D004141 ORTHO05D005416 1.7e-65 254.2 158 77.2
Nitab4.5_0002851g0030 Nicotiana tabacum HOM05D004141 ORTHO05D005416 4.9e-65 252.7 367 42.0
Lalb_Chr01g0016531 Lupinus albus HOM05D004141 ORTHO05D005416 2.7e-63 246.9 153 75.2
BcaC01g01525 Brassica carinata HOM05D004141 ORTHO05D005416 1.9e-61 240.7 178 69.1
MD00G1077900 Malus domestica HOM05D004141 ORTHO05D005416 2.4e-59 233.8 189 67.2
Rhsim06G0208700 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.2e-55 221.5 339 41.9
MD03G1178900 Malus domestica HOM05D004141 ORTHO05D005416 4.8e-52 209.5 221 56.6
Lalb_Chr01g0016541 Lupinus albus HOM05D004141 ORTHO05D048486 8.4e-49 198.7 146 66.4
Rhsim02G0229600 Rhododendron simsii HOM05D004141 ORTHO05D005416 8.7e-46 188.7 123 69.9
BcaB05g25154 Brassica carinata HOM05D004141 ORTHO05D005416 8.4e-41 172.2 155 58.7
SHI22488 Sapria himalayana HOM05D004141 ORTHO05D005416 1.4e-32 144.8 276 36.2
Rhsim02G0051400 Rhododendron simsii HOM05D004141 ORTHO05D000437 1.1e-27 128.6 85 70.6
C02p35890 Brassica napus HOM05D004141 ORTHO05D005416 1.2e-23 115.2 308 29.2
BraA02t07239Z Brassica rapa HOM05D004141 ORTHO05D026982 1.2e-23 115.2 77 70.1
A02p22350 Brassica napus HOM05D004141 ORTHO05D026982 3.5e-23 113.6 77 70.1
EL10Ac3g06735 Beta vulgaris HOM05D004141 ORTHO05D026982 6.3e-20 102.8 57 78.9
EL10Ac3g06738 Beta vulgaris HOM05D004141 ORTHO05D026982 1.8e-19 101.3 55 80.0
MD00G1077500 Malus domestica HOM05D004141 ORTHO05D005416 2.0e-18 97.8 66 69.7
Nitab4.5_0010088g0010 Nicotiana tabacum HOM05D004141 ORTHO05D005416 1.7e-17 94.7 107 46.7
BcaC01g01527 Brassica carinata HOM05D004141 ORTHO05D009181 5.7e-13 79.7 56 71.4
BcaC01g01526 Brassica carinata HOM05D004141 ORTHO05D005416 8.2e-12 75.9 61 57.4
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 2.4e-11 74.3 248 27.8
BcaC03g15838 Brassica carinata HOM05D004141 ORTHO05D005416 5.9e-10 69.7 46 65.2
RcHm_v2.0_Chr4g0402621 Rosa chinensis HOM05D004141 ORTHO05D344211 5.9e-10 69.7 49 71.4
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 7.7e-10 69.3 222 28.8
Oeu048326.1 Olea europaea HOM05D000783 ORTHO05D000705 6.5e-09 66.2 208 27.4
Oeu008350.1 Olea europaea HOM05D000783 ORTHO05D000705 8.5e-09 65.9 198 27.8
MD00G1078000 Malus domestica HOM05D004141 ORTHO05D005416 4.2e-08 63.5 43 65.1
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 1.2e-07 62.0 164 32.9
PRCOL_00001337 Prasinoderma coloniale HOM05D003378 ORTHO05D003942 1.2e-07 62.0 294 25.5
SGA_v2.0_scaffold1G00349 Striga asiatica HOM05D000783 ORTHO05D000705 4.7e-07 60.1 199 25.6
ATR0807G093 Amborella trichopoda HOM05D000783 ORTHO05D000705 6.1e-07 59.7 238 24.8
TWI53G1695 Tripterygium wilfordii HOM05D000783 ORTHO05D000705 6.1e-07 59.7 191 27.2
CAN.G472.28 Capsicum annuum HOM05D000783 ORTHO05D000705 1.4e-06 58.5 199 25.1
Ca_05757_v3 Cicer arietinum L. HOM05D000783 ORTHO05D000705 5.1e-06 56.6 195 25.1
ECA248G0502 Erigeron canadensis HOM05D000783 ORTHO05D000705 6.7e-06 56.2 199 27.6


User provided reference genes

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