Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10020398m.g Citrus clementina HOM05D006487 ORTHO05D007982 1.0e-224 783.1 409 100.0
Thecc.05G197400 Theobroma cacao HOM05D006487 ORTHO05D007982 4.4e-106 389.0 411 55.5
Atru.chr9.84 Acer truncatum HOM05D006487 ORTHO05D007982 1.7e-102 377.1 243 77.0
Dinv03426 Davidia involucrata HOM05D006487 ORTHO05D007982 1.7e-102 377.1 391 56.8
TWI81G0553 Tripterygium wilfordii HOM05D006487 ORTHO05D007982 2.2e-102 376.7 426 53.1
Gohir.A08G225300 Gossypium hirsutum HOM05D006487 ORTHO05D007982 7.2e-101 371.7 416 55.0
Haze_18332 Corylus avellana HOM05D006487 ORTHO05D007982 1.2e-98 364.4 420 51.4
Gorai.004G262200 Gossypium raimondii HOM05D006487 ORTHO05D007982 6.3e-97 358.6 431 53.1
Hma1.2p1_0989F.1_g244820 Hydrangea macrophylla HOM05D006487 ORTHO05D007982 1.4e-96 357.5 393 52.9
Manes.02G218400 Manihot esculenta HOM05D006487 ORTHO05D007982 3.1e-96 356.3 367 56.9
Lalb_Chr22g0353991 Lupinus albus HOM05D006487 ORTHO05D007982 5.4e-96 355.5 394 54.3
Gohir.D08G245700 Gossypium hirsutum HOM05D006487 ORTHO05D007982 1.2e-95 354.4 416 53.1
Phvul.004G139000 Phaseolus vulgaris HOM05D006487 ORTHO05D007982 3.8e-94 349.4 402 51.2
COL.COLO4_24904 Corchorus olitorius HOM05D006487 ORTHO05D007982 6.6e-94 348.6 399 51.4
Potri.004G069400 Populus trichocarpa HOM05D006487 ORTHO05D007982 1.5e-93 347.4 412 52.4
Actinidia34682 Actinidia chinensis HOM05D006487 ORTHO05D007982 3.3e-93 346.3 395 51.1
Psat1g121120 Pisum sativum HOM05D006487 ORTHO05D007982 3.0e-91 339.7 410 51.0
CANSAT64G1132 Cannabis sativa HOM05D006487 ORTHO05D007982 4.0e-91 339.3 423 50.8
Prupe.5G243800 Prunus persica HOM05D006487 ORTHO05D007982 6.8e-91 338.6 433 50.1
Glyma.09G164600 Glycine max HOM05D006487 ORTHO05D007982 8.9e-91 338.2 407 49.1
arahy.Tifrunner.gnm1.ann1.FG107U Arachis hypogaea HOM05D006487 ORTHO05D007982 9.8e-90 334.7 369 51.8
arahy.Tifrunner.gnm1.ann1.49K0I5 Arachis hypogaea HOM05D006487 ORTHO05D007982 3.7e-89 332.8 369 51.8
Lj2g0009690 Lotus japonicus HOM05D006487 ORTHO05D007982 1.8e-88 330.5 405 50.4
Medtr6g077860 Medicago truncatula HOM05D006487 ORTHO05D007982 1.8e-88 330.5 399 48.9
Sed0005317 Sechium edule HOM05D006487 ORTHO05D007982 2.4e-88 330.1 393 51.4
TAR629G0717 Trochodendron aralioides HOM05D006487 ORTHO05D007982 3.2e-88 329.7 419 50.1
QL10p034099 Quercus lobata HOM05D006487 ORTHO05D007982 4.1e-88 329.3 406 51.5
FvH4_5g18410 Fragaria vesca HOM05D006487 ORTHO05D007982 4.5e-87 325.9 434 49.1
Nitab4.5_0003040g0090 Nicotiana tabacum HOM05D006487 ORTHO05D007982 4.5e-87 325.9 347 53.6
Ca_11836_v3 Cicer arietinum L. HOM05D006487 ORTHO05D007982 5.9e-87 325.5 401 48.9
Glyma.16G213000 Glycine max HOM05D006487 ORTHO05D007982 2.3e-86 323.6 345 52.2
GSVIVG01027119001 Vitis vinifera HOM05D006487 ORTHO05D007982 2.9e-86 323.2 378 51.1
CsaV3_1G007510 Cucumis sativus L. HOM05D006487 ORTHO05D007982 6.6e-86 322.0 416 49.0
RcHm_v2.0_Chr7g0177071 Rosa chinensis HOM05D006487 ORTHO05D007982 6.6e-86 322.0 437 47.8
VMungo0464G1082 Vigna mungo HOM05D006487 ORTHO05D007982 9.5e-85 318.2 344 52.0
CAN.G929.21 Capsicum annuum HOM05D006487 ORTHO05D007982 2.8e-84 316.6 340 54.1
FAN13G0937 Fragaria x ananassa HOM05D006487 ORTHO05D007982 1.0e-83 314.7 399 50.6
Nitab4.5_0000782g0060 Nicotiana tabacum HOM05D006487 ORTHO05D007982 1.8e-83 313.9 363 52.3
MELO3C002168.2 Cucumis melo HOM05D006487 ORTHO05D007982 3.1e-83 313.2 404 49.0
PGR083G2465 Punica granatum HOM05D006487 ORTHO05D007982 5.2e-83 312.4 395 47.3
PGSC0003DMG400010175 Solanum tuberosum HOM05D006487 ORTHO05D007982 1.5e-82 310.8 335 53.7
Nn4g25081 Nelumbo nucifera HOM05D006487 ORTHO05D007982 2.0e-82 310.5 411 49.6
HanXRQChr15g0492111 Helianthus annuus HOM05D006487 ORTHO05D007982 2.6e-82 310.1 399 49.4
MBI06_g27513_MAGBIO Magnolia biondii HOM05D006487 ORTHO05D007982 3.4e-82 309.7 410 45.6
Sopen03g029330 Solanum pennellii HOM05D006487 ORTHO05D007982 5.8e-82 308.9 335 53.4
Cpa.g.sc168.16 Carica papaya HOM05D006487 ORTHO05D007982 1.7e-81 307.4 241 66.4
Oeu023551.1 Olea europaea HOM05D006487 ORTHO05D007982 1.7e-81 307.4 343 52.5
AL1G54980 Arabidopsis lyrata HOM05D006487 ORTHO05D007982 2.9e-81 306.6 362 51.1
Solyc03g098620.3 Solanum lycopersicum HOM05D006487 ORTHO05D007982 6.4e-81 305.4 335 53.1
FAN18G0592 Fragaria x ananassa HOM05D006487 ORTHO05D007982 3.2e-80 303.1 338 53.8
DCAR_011682 Daucus carota HOM05D006487 ORTHO05D007982 9.2e-80 301.6 373 50.4
FAN08G3399 Fragaria x ananassa HOM05D006487 ORTHO05D007982 1.2e-79 301.2 431 47.3
MD14G1245900 Malus domestica HOM05D006487 ORTHO05D007982 4.6e-79 299.3 383 47.3
PSO063G4419 Papaver somniferum HOM05D006487 ORTHO05D007982 1.3e-78 297.7 403 46.4
Peaxi162Scf00171g00242 Petunia axillaris HOM05D006487 ORTHO05D007982 1.1e-77 294.7 312 55.1
AT1G48380 Arabidopsis thaliana HOM05D006487 ORTHO05D007982 3.3e-77 293.1 369 48.8
Thhalv10011620m.g Eutrema salsugineum HOM05D006487 ORTHO05D007982 3.3e-77 293.1 340 50.9
PSO782G2052 Papaver somniferum HOM05D006487 ORTHO05D007982 5.6e-77 292.4 405 45.4
SGA_v2.0_scaffold90G27746 Striga asiatica HOM05D006487 ORTHO05D007982 5.6e-77 292.4 383 47.0
Lsat_1_v5_gn_0_10541 Lactuca sativa HOM05D006487 ORTHO05D007982 1.2e-76 291.2 359 49.0
AUR62040775 Chenopodium quinoa HOM05D006487 ORTHO05D007982 2.1e-76 290.4 257 59.9
Migut.O00267 Erythranthe guttata HOM05D006487 ORTHO05D007982 3.6e-76 289.7 391 45.0
Sabra04G0046600 Salix brachista HOM05D006487 ORTHO05D007982 4.7e-76 289.3 439 44.6
CARHR037990 Cardamine hirsuta HOM05D006487 ORTHO05D007982 1.4e-75 287.7 363 48.8
Carub.0001s3750 Capsella rubella HOM05D006487 ORTHO05D007982 1.8e-75 287.3 364 48.4
A08p04750 Brassica napus HOM05D006487 ORTHO05D007982 4.0e-75 286.2 373 48.0
BraA08t32504Z Brassica rapa HOM05D006487 ORTHO05D007982 4.0e-75 286.2 373 48.0
TPR.G19888 Trifolium pratense HOM05D006487 ORTHO05D007982 4.0e-75 286.2 325 53.8
Aqoxy3G04297 Aquilegia oxysepala HOM05D006487 ORTHO05D007982 6.8e-75 285.4 351 47.6
Sp1g35330 Schrenkiella parvula HOM05D006487 ORTHO05D007982 6.8e-75 285.4 362 46.1
AUR62033020 Chenopodium quinoa HOM05D006487 ORTHO05D007982 8.9e-75 285.0 387 47.3
SalBow5G2999 Salvia bowleyana HOM05D006487 ORTHO05D007982 4.4e-74 282.7 373 48.3
BcaB04g17434 Brassica carinata HOM05D006487 ORTHO05D007982 5.8e-74 282.3 368 49.2
Sc07g0007560 Simmondsia chinensis HOM05D006487 ORTHO05D007982 9.8e-74 281.6 380 47.1
BcaC07g37138 Brassica carinata HOM05D006487 ORTHO05D007982 2.2e-73 280.4 370 47.6
BolC8t47322H Brassica oleracea HOM05D006487 ORTHO05D007982 2.2e-73 280.4 369 47.4
Eucgr.H00648 Eucalyptus grandis HOM05D006487 ORTHO05D007982 1.1e-72 278.1 177 74.0
MSTRG.23212 Avicennia marina HOM05D006487 ORTHO05D007982 1.4e-72 277.7 410 42.9
C08p05120 Brassica napus HOM05D006487 ORTHO05D007982 1.9e-72 277.3 372 46.8
ClCG01G014820 Citrullus lanatus HOM05D006487 ORTHO05D007982 1.9e-72 277.3 247 59.9
Rhsim08G0124800 Rhododendron simsii HOM05D006487 ORTHO05D007982 1.2e-71 274.6 515 38.8
THA.LOC104820327 Tarenaya hassleriana HOM05D006487 ORTHO05D007982 1.2e-71 274.6 347 49.6
Cc04_g08450 Coffea canephora HOM05D006487 ORTHO05D007982 1.4e-67 261.2 389 44.5
HPP92_014774 Vanilla planifolia HOM05D006487 ORTHO05D007982 9.9e-66 255.0 386 40.4
vmacro17744 Vaccinium macrocarpon HOM05D006487 ORTHO05D007982 6.4e-65 252.3 300 47.3
Prupe.4G244900 Prunus persica HOM05D006487 ORTHO05D007982 5.4e-64 249.2 246 56.9
CDE04G1004 Ceratophyllum demersum HOM05D006487 ORTHO05D007982 6.0e-63 245.7 365 43.8
Lj9A412T44 Lonicera japonica HOM05D006487 ORTHO05D007982 1.3e-62 244.6 342 47.7
ATR0618G270 Amborella trichopoda HOM05D006487 ORTHO05D007982 3.0e-62 243.4 375 41.6
Cfa017861 Carpinus fangiana HOM05D006487 ORTHO05D007982 1.9e-61 240.7 316 47.8
EL10Ac8g19478 Beta vulgaris HOM05D006487 ORTHO05D007982 5.6e-61 239.2 336 44.3
FAN04G2664 Fragaria x ananassa HOM05D006487 ORTHO05D007982 8.1e-60 235.3 399 46.6
CiPaw.16G073400 Carya illinoinensis HOM05D006487 ORTHO05D007982 1.7e-57 227.6 306 47.1
Hund22367 Selenicereus undatus HOM05D006487 ORTHO05D007982 1.1e-56 224.9 269 49.8
Zm00001eb271770 Zea mays HOM05D006487 ORTHO05D007982 1.4e-56 224.6 386 39.1
Os07g0172200 Oryza sativa ssp. japonica HOM05D006487 ORTHO05D007982 1.3e-54 218.0 383 39.4
SEGI_16734 Sequoiadendron giganteum HOM05D006487 ORTHO05D007982 4.3e-53 213.0 376 37.0
Pp3c5_25480 Physcomitrium patens HOM05D006487 ORTHO05D007982 1.1e-48 198.4 292 40.8
Hma1.2p1_0989F.1_g244830 Hydrangea macrophylla HOM05D006487 ORTHO05D007982 5.4e-48 196.1 161 60.9
Mapoly0080s0074 Marchantia polymorpha HOM05D006487 ORTHO05D007982 7.1e-48 195.7 253 42.3
SMO117G0078 Selaginella moellendorffii HOM05D006487 ORTHO05D007982 1.2e-47 194.9 181 50.3
TAR629G1006 Trochodendron aralioides HOM05D006487 ORTHO05D007982 2.1e-47 194.1 145 64.8
FAN09G4505 Fragaria x ananassa HOM05D006487 ORTHO05D007982 2.5e-45 187.2 122 73.0
Aa31LG10G5380 Aethionema arabicum HOM05D006487 ORTHO05D007982 5.6e-45 186.0 244 45.5
AagrBONN_evm.TU.Sc2ySwM_228.567 Anthoceros agrestis HOM05D006487 ORTHO05D007982 5.3e-43 179.5 240 40.4
FAN09G0815 Fragaria x ananassa HOM05D006487 ORTHO05D007982 6.9e-43 179.1 123 71.5
Pp3c25_9140 Physcomitrium patens HOM05D006487 ORTHO05D007982 1.4e-40 171.4 419 33.2
Prupe.2G315400 Prunus persica HOM05D006487 ORTHO05D007982 6.5e-33 146.0 227 43.6
Ca_30285_v3 Cicer arietinum L. HOM05D006487 ORTHO05D007982 8.7e-30 135.6 202 45.0
Cre13.g576500 Chlamydomonas reinhardtii HOM05D006487 ORTHO05D007982 1.2e-26 125.2 161 39.8
Os06g0730200 Oryza sativa ssp. japonica HOM05D006487 ORTHO05D007982 1.5e-26 124.8 123 53.7
PRCOL_00006754 Prasinoderma coloniale HOM05D006487 ORTHO05D007982 1.6e-20 104.8 111 41.4
CSS0035874 Camellia sinensis var. sinensis HOM05D006487 ORTHO05D007982 8.2e-20 102.4 233 38.2
MCO12G143 Micromonas commoda HOM05D006487 ORTHO05D007982 1.5e-18 98.2 161 37.9
Ah.14g085790 Amaranthus hybridus HOM05D006487 ORTHO05D007982 1.1e-16 92.0 85 61.2
TPR.G27400 Trifolium pratense HOM05D006487 ORTHO05D007982 9.4e-16 89.0 98 50.0
CBR_g34174 Chara braunii HOM05D006487 ORTHO05D007982 1.6e-15 88.2 258 28.7
ECA232G2176 Erigeron canadensis HOM05D006487 ORTHO05D007982 6.7e-14 82.8 237 35.0
Atru.chr9.83 Acer truncatum HOM05D006487 ORTHO05D007982 6.9e-11 72.8 84 59.5
BcaC05g27591 Brassica carinata HOM05D006487 ORTHO05D007982 3.8e-09 67.0 114 39.5
SMO117G0021 Selaginella moellendorffii HOM05D006487 ORTHO05D007982 6.7e-06 56.2 87 36.8


User provided reference genes

Program Settings