Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10020370m.g Citrus clementina HOM05D005239 ORTHO05D006698 5.2e-232 807.4 415 100.0
Atru.chr9.1540 Acer truncatum HOM05D005239 ORTHO05D006698 1.5e-170 603.2 411 77.9
Dinv43567 Davidia involucrata HOM05D005239 ORTHO05D006698 7.5e-162 574.3 409 73.8
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 6.3e-161 571.2 408 74.0
GSVIVG01018386001 Vitis vinifera HOM05D005239 ORTHO05D006698 2.4e-160 569.3 370 78.1
Gohir.A09G201600 Gossypium hirsutum HOM05D005239 ORTHO05D006698 3.1e-160 568.9 396 75.3
Hma1.2p1_0601F.1_g187220 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 9.1e-160 567.4 418 72.5
Gorai.006G218900 Gossypium raimondii HOM05D005239 ORTHO05D006698 2.0e-159 566.2 396 74.5
CiPaw.13G020400 Carya illinoinensis HOM05D005239 ORTHO05D006698 4.5e-159 565.1 409 74.1
Dinv44000 Davidia involucrata HOM05D005239 ORTHO05D001060 5.9e-159 564.7 386 75.1
Prupe.1G571600 Prunus persica HOM05D005239 ORTHO05D006698 1.0e-158 563.9 390 75.1
Gohir.D09G195500 Gossypium hirsutum HOM05D005239 ORTHO05D006698 2.9e-158 562.4 396 74.2
PGR119G0794 Punica granatum HOM05D005239 ORTHO05D006698 1.1e-157 560.5 407 71.3
Thecc.04G216000 Theobroma cacao HOM05D005239 ORTHO05D006698 1.5e-157 560.1 392 75.0
Duzib151G1142 Durio zibethinus HOM05D005239 ORTHO05D006698 4.2e-157 558.5 362 77.9
CSS0007844 Camellia sinensis var. sinensis HOM05D005239 ORTHO05D006698 2.7e-156 555.8 424 71.7
CsaV3_3G010220 Cucumis sativus L. HOM05D005239 ORTHO05D006698 2.3e-155 552.7 422 69.7
TAR636G2805 Trochodendron aralioides HOM05D005239 ORTHO05D006698 5.2e-155 551.6 416 70.4
MELO3C006242.2 Cucumis melo HOM05D005239 ORTHO05D006698 6.8e-155 551.2 422 69.9
Eucgr.H02846 Eucalyptus grandis HOM05D005239 ORTHO05D006698 2.6e-154 549.3 368 76.4
QL04p024849 Quercus lobata HOM05D005239 ORTHO05D006698 4.4e-154 548.5 353 79.3
Sabra02G0168400 Salix brachista HOM05D005239 ORTHO05D006698 9.8e-154 547.4 407 71.3
DCAR_029633 Daucus carota HOM05D005239 ORTHO05D006698 1.7e-153 546.6 407 69.8
Actinidia21601 Actinidia chinensis HOM05D005239 ORTHO05D006698 2.2e-153 546.2 376 74.7
RcHm_v2.0_Chr6g0273481 Rosa chinensis HOM05D005239 ORTHO05D006698 6.3e-153 544.7 416 71.2
TWI14G1099 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 6.3e-153 544.7 425 69.6
TWI59G0212 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 8.3e-153 544.3 404 70.0
MD08G1235300 Malus domestica HOM05D005239 ORTHO05D006698 1.4e-152 543.5 379 73.6
Potri.002G216100 Populus trichocarpa HOM05D005239 ORTHO05D006698 1.8e-152 543.1 410 70.5
Sed0010493 Sechium edule HOM05D005239 ORTHO05D006698 1.8e-152 543.1 373 73.7
TAR629G3002 Trochodendron aralioides HOM05D005239 ORTHO05D006698 2.4e-152 542.7 420 69.3
FvH4_2g12720 Fragaria vesca HOM05D005239 ORTHO05D006698 3.1e-152 542.3 416 70.7
Nn6g33642 Nelumbo nucifera HOM05D005239 ORTHO05D006698 3.1e-152 542.3 377 75.1
COL.COLO4_20862 Corchorus olitorius HOM05D005239 ORTHO05D006698 5.4e-152 541.6 363 76.6
Sc20g0003020 Simmondsia chinensis HOM05D005239 ORTHO05D006698 9.1e-152 540.8 376 73.9
vmacro21097 Vaccinium macrocarpon HOM05D005239 ORTHO05D006698 1.2e-151 540.4 388 74.2
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 2.0e-151 539.7 411 68.4
Sed0027364 Sechium edule HOM05D005239 ORTHO05D006698 2.0e-151 539.7 409 69.2
Lj5g0010357 Lotus japonicus HOM05D005239 ORTHO05D006698 3.5e-151 538.9 385 73.2
FAN27G2303 Fragaria x ananassa HOM05D005239 ORTHO05D006698 4.5e-151 538.5 429 69.2
ClCG05G002730 Citrullus lanatus HOM05D005239 ORTHO05D006698 1.0e-150 537.3 387 72.6
Ah.06g191320 Amaranthus hybridus HOM05D005239 ORTHO05D006698 1.3e-150 537.0 401 69.8
arahy.Tifrunner.gnm1.ann1.X9CQTL Arachis hypogaea HOM05D005239 ORTHO05D006698 1.3e-150 537.0 402 70.4
Peaxi162Scf01144g00013 Petunia axillaris HOM05D005239 ORTHO05D006698 1.3e-150 537.0 429 67.6
AUR62041654 Chenopodium quinoa HOM05D005239 ORTHO05D006698 3.8e-150 535.4 408 68.1
FAN15G3107 Fragaria x ananassa HOM05D005239 ORTHO05D006698 5.0e-150 535.0 430 68.6
Manes.05G061000 Manihot esculenta HOM05D005239 ORTHO05D006698 5.0e-150 535.0 396 71.7
Nitab4.5_0004264g0020 Nicotiana tabacum HOM05D005239 ORTHO05D006698 3.2e-149 532.3 391 71.6
Glyma.20G243400 Glycine max HOM05D005239 ORTHO05D006698 1.2e-148 530.4 382 72.8
arahy.Tifrunner.gnm1.ann1.XN1C7B Arachis hypogaea HOM05D005239 ORTHO05D006698 1.6e-148 530.0 404 69.6
Haze_02934 Corylus avellana HOM05D005239 ORTHO05D006698 3.6e-148 528.9 434 67.1
EL10Ac4g08842 Beta vulgaris HOM05D005239 ORTHO05D006698 8.0e-148 527.7 368 71.5
Phvul.007G006700 Phaseolus vulgaris HOM05D005239 ORTHO05D006698 1.0e-147 527.3 375 72.5
Aqoxy3G02472 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 1.4e-147 526.9 355 75.2
CAN.G1480.7 Capsicum annuum HOM05D005239 ORTHO05D006698 2.3e-147 526.2 382 71.7
Rhsim01G0145300 Rhododendron simsii HOM05D005239 ORTHO05D006698 2.6e-146 522.7 409 68.9
CANSAT54G1536 Cannabis sativa HOM05D005239 ORTHO05D006698 3.4e-146 522.3 411 68.6
Sopen01g032450 Solanum pennellii HOM05D005239 ORTHO05D006698 3.4e-146 522.3 381 71.9
Solyc01g080860.3 Solanum lycopersicum HOM05D005239 ORTHO05D006698 9.8e-146 520.8 381 71.4
VMungo0720G0476 Vigna mungo HOM05D005239 ORTHO05D006698 1.3e-145 520.4 403 68.7
PSO170G2576 Papaver somniferum HOM05D005239 ORTHO05D006698 1.1e-144 517.3 388 70.6
THA.LOC104802511 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 1.4e-144 516.9 378 71.4
TPR.G10426 Trifolium pratense HOM05D005239 ORTHO05D006698 3.1e-144 515.8 380 70.5
THA.LOC104817164 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 1.2e-143 513.8 376 70.5
PSO302G0170 Papaver somniferum HOM05D005239 ORTHO05D006698 2.7e-143 512.7 397 69.0
Medtr1g116110 Medicago truncatula HOM05D005239 ORTHO05D006698 1.7e-142 510.0 411 65.9
CDE04G1215 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 2.9e-142 509.2 354 71.2
Ca_11344_v3 Cicer arietinum L. HOM05D005239 ORTHO05D006698 3.8e-142 508.8 381 70.3
Cc02_g25930 Coffea canephora HOM05D005239 ORTHO05D006698 7.3e-141 504.6 431 62.4
PGSC0003DMG400001672 Solanum tuberosum HOM05D005239 ORTHO05D006698 7.3e-141 504.6 407 66.6
Lalb_Chr02g0143811 Lupinus albus HOM05D005239 ORTHO05D006698 1.2e-140 503.8 372 69.6
Aa31LG1G26110 Aethionema arabicum HOM05D005239 ORTHO05D006698 4.7e-140 501.9 377 69.2
ECA234G1231 Erigeron canadensis HOM05D005239 ORTHO05D006698 8.0e-140 501.1 375 68.3
Oeu002884.1 Olea europaea HOM05D005239 ORTHO05D006698 8.0e-140 501.1 452 61.1
Lj9A547G68 Lonicera japonica HOM05D005239 ORTHO05D006698 8.9e-139 497.7 337 74.2
AL4G43540 Arabidopsis lyrata HOM05D005239 ORTHO05D006698 7.5e-138 494.6 413 64.9
Psat6g232360 Pisum sativum HOM05D005239 ORTHO05D006698 7.5e-138 494.6 405 65.2
BraA04t18797Z Brassica rapa HOM05D005239 ORTHO05D006698 9.8e-138 494.2 374 68.2
ATR1153G024 Amborella trichopoda HOM05D005239 ORTHO05D006698 1.7e-137 493.4 352 71.0
BolC4t28610H Brassica oleracea HOM05D005239 ORTHO05D006698 4.9e-137 491.9 371 67.7
Thhalv10001456m.g Eutrema salsugineum HOM05D005239 ORTHO05D006698 6.4e-137 491.5 406 63.5
BcaC02g07098 Brassica carinata HOM05D005239 ORTHO05D006698 1.1e-136 490.7 374 67.6
HanXRQChr17g0562471 Helianthus annuus HOM05D005239 ORTHO05D006698 1.8e-136 490.0 403 64.5
BcaB06g29384 Brassica carinata HOM05D005239 ORTHO05D006698 1.6e-135 486.9 433 60.7
Sp4g26610 Schrenkiella parvula HOM05D005239 ORTHO05D006698 1.6e-135 486.9 375 67.5
AT2G44520 Arabidopsis thaliana HOM05D005239 ORTHO05D006698 2.0e-135 486.5 409 63.3
Carub.0004s2708 Capsella rubella HOM05D005239 ORTHO05D006698 2.0e-135 486.5 413 62.7
HPP92_001886 Vanilla planifolia HOM05D005239 ORTHO05D006698 5.6e-133 478.4 426 61.3
C04p05410 Brassica napus HOM05D005239 ORTHO05D006698 1.2e-132 477.2 352 69.0
BolC4t22181H Brassica oleracea HOM05D005239 ORTHO05D006698 1.2e-132 477.2 352 69.0
SGA_v2.0_scaffold69G23296 Striga asiatica HOM05D005239 ORTHO05D006698 1.6e-132 476.9 377 68.2
Os01g0527700 Oryza sativa ssp. japonica HOM05D005239 ORTHO05D006698 1.2e-130 470.7 353 68.6
SGA_v2.0_scaffold52G19274 Striga asiatica HOM05D005239 ORTHO05D006698 1.2e-130 470.7 445 59.3
unitig_26.g9718 Utricularia gibba HOM05D005239 ORTHO05D006698 9.8e-130 467.6 411 60.8
Zm00001eb402310 Zea mays HOM05D005239 ORTHO05D006698 9.8e-130 467.6 363 66.7
Duzib212G0896 Durio zibethinus HOM05D005239 ORTHO05D006698 4.1e-128 462.2 362 67.7
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 1.6e-127 460.3 337 69.1
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 1.7e-126 456.8 340 68.2
BcaC02g12301 Brassica carinata HOM05D005239 ORTHO05D006698 3.3e-125 452.6 345 67.0
MD15G1426600 Malus domestica HOM05D005239 ORTHO05D006698 1.2e-124 450.7 309 75.4
BcaNung07053 Brassica carinata HOM05D005239 ORTHO05D006698 2.8e-124 449.5 433 57.7
Nitab4.5_0001476g0120 Nicotiana tabacum HOM05D005239 ORTHO05D006698 8.9e-123 444.5 395 62.8
Lsat_1_v5_gn_4_39040 Lactuca sativa HOM05D005239 ORTHO05D006698 2.9e-121 439.5 368 62.8
Zm00001eb005400 Zea mays HOM05D005239 ORTHO05D006698 1.0e-118 431.0 337 65.9
SEGI_24425 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 1.6e-111 407.1 272 70.6
Cpa.g.sc20.28 Carica papaya HOM05D005239 ORTHO05D006698 5.6e-109 398.7 253 79.4
AagrBONN_evm.TU.Sc2ySwM_369.187 Anthoceros agrestis HOM05D005239 ORTHO05D006698 1.6e-108 397.1 388 54.4
Actinidia33289 Actinidia chinensis HOM05D005239 ORTHO05D006698 2.0e-106 390.2 235 82.1
SMO364G0841 Selaginella moellendorffii HOM05D005239 ORTHO05D006698 1.3e-102 377.5 353 54.7
Mapoly0029s0153 Marchantia polymorpha HOM05D005239 ORTHO05D006698 3.3e-101 372.9 379 53.8
Migut.B01467 Erythranthe guttata HOM05D005239 ORTHO05D006698 1.5e-98 364.0 247 74.5
CDE12G0888 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 1.1e-93 347.8 249 71.5
Hma1.2p1_0601F.1_g187230 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 1.9e-93 347.1 258 73.6
CBR_g3821 Chara braunii HOM05D005239 ORTHO05D006698 4.0e-91 339.3 290 57.9
CARHR139710 Cardamine hirsuta HOM05D005239 ORTHO05D006698 2.0e-90 337.0 249 69.1
PSO357G0304 Papaver somniferum HOM05D005239 ORTHO05D006698 1.1e-88 331.3 204 82.4
Pp3c14_19200 Physcomitrium patens HOM05D005239 ORTHO05D006698 2.1e-87 327.0 261 61.7
CAN.G74.42 Capsicum annuum HOM05D005239 ORTHO05D006698 6.7e-86 322.0 308 57.1
MD15G1426900 Malus domestica HOM05D005239 ORTHO05D006698 1.9e-72 277.3 193 73.6
Cre12.g516350 Chlamydomonas reinhardtii HOM05D005239 ORTHO05D006698 4.2e-72 276.2 278 51.1
Oeu037395.1 Olea europaea HOM05D005239 ORTHO05D006698 3.6e-71 273.1 325 53.2
MCO03G363 Micromonas commoda HOM05D005239 ORTHO05D006698 1.6e-68 264.2 283 50.2
BraA05t19443Z Brassica rapa HOM05D005239 ORTHO05D006698 8.2e-68 261.9 293 50.5
A05p04670 Brassica napus HOM05D005239 ORTHO05D006698 3.4e-66 256.5 293 51.2
Aqoxy5G02001 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 1.0e-65 255.0 170 74.1
PRCOL_00000009 Prasinoderma coloniale HOM05D005239 ORTHO05D006698 8.5e-65 251.9 348 41.7
BcaB02g08828 Brassica carinata HOM05D005239 ORTHO05D006698 2.9e-57 226.9 245 53.1
SHI13675 Sapria himalayana HOM05D005239 ORTHO05D006698 8.2e-52 208.8 205 55.6
FAN24G3432 Fragaria x ananassa HOM05D005239 ORTHO05D006698 1.9e-40 171.0 169 61.5
Cfa027222 Carpinus fangiana HOM05D005239 ORTHO05D006698 2.1e-39 167.5 331 36.3
PGR004G1759 Punica granatum HOM05D005239 ORTHO05D006698 1.0e-33 148.7 121 66.1
TPR.G37315 Trifolium pratense HOM05D005239 ORTHO05D006698 3.0e-30 137.1 83 75.9
PSO081G0040 Papaver somniferum HOM05D005239 ORTHO05D006698 2.2e-28 131.0 84 79.8
Glyma.10G293300 Glycine max HOM05D005239 ORTHO05D006698 1.7e-25 121.3 76 72.4
RcHm_v2.0_Chr6g0271171 Rosa chinensis HOM05D005239 ORTHO05D006698 1.0e-22 112.1 72 76.4
RcHm_v2.0_Chr7g0200821 Rosa chinensis HOM05D005239 ORTHO05D006698 1.7e-20 104.8 72 72.2
CDE12G0056 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 2.9e-20 104.0 80 66.2
SEGI_27712 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 8.0e-15 85.9 57 73.7
Cc02_g25970 Coffea canephora HOM05D005239 ORTHO05D006698 1.1e-14 85.5 98 49.0
SHI13676 Sapria himalayana HOM05D005239 ORTHO05D006698 1.4e-11 75.1 85 54.1
MSTRG.17096 Avicennia marina HOM05D005239 ORTHO05D006698 6.8e-06 56.2 34 79.4


User provided reference genes

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