Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10020246m.g Citrus clementina HOM05D002977 ORTHO05D003225 1.1e-224 783.1 430 100.0
Prupe.2G153900 Prunus persica HOM05D002977 ORTHO05D003225 3.3e-64 250.0 451 42.6
COL.COLO4_06963 Corchorus olitorius HOM05D002977 ORTHO05D003225 7.4e-64 248.8 471 43.5
Duzib138G0317 Durio zibethinus HOM05D002977 ORTHO05D003225 1.4e-62 244.6 499 41.1
Thecc.01G369200 Theobroma cacao HOM05D002977 ORTHO05D003225 1.4e-62 244.6 467 42.4
Potri.002G152700 Populus trichocarpa HOM05D002977 ORTHO05D003225 7.7e-61 238.8 487 42.1
Sabra02G0121100 Salix brachista HOM05D002977 ORTHO05D003225 5.0e-60 236.1 488 41.0
Potri.014G077400 Populus trichocarpa HOM05D002977 ORTHO05D003225 8.0e-58 228.8 486 43.4
MD01G1047600 Malus domestica HOM05D002977 ORTHO05D003225 2.6e-56 223.8 461 43.0
Atru.chr5.400 Acer truncatum HOM05D002977 ORTHO05D003225 1.3e-55 221.5 472 41.7
Sabra14G0054900 Salix brachista HOM05D002977 ORTHO05D003225 2.2e-55 220.7 483 43.1
FAN10G1938 Fragaria x ananassa HOM05D002977 ORTHO05D003225 8.2e-55 218.8 453 40.8
FAN10G0205 Fragaria x ananassa HOM05D002977 ORTHO05D003225 1.4e-54 218.0 451 40.6
MD07G1125600 Malus domestica HOM05D002977 ORTHO05D003225 5.3e-54 216.1 459 41.2
QL08p050716 Quercus lobata HOM05D002977 ORTHO05D003225 1.6e-53 214.5 466 41.4
FvH4_7g12980 Fragaria vesca HOM05D002977 ORTHO05D003225 3.8e-52 209.9 457 38.7
Manes.05G040400 Manihot esculenta HOM05D002977 ORTHO05D003225 3.8e-52 209.9 446 44.8
RcHm_v2.0_Chr1g0352121 Rosa chinensis HOM05D002977 ORTHO05D003225 1.1e-51 208.4 454 40.7
Cpa.g.c33531 Carica papaya HOM05D002977 ORTHO05D003225 1.5e-51 208.0 469 37.5
Gorai.004G156200 Gossypium raimondii HOM05D002977 ORTHO05D003225 7.2e-51 205.7 441 40.8
FAN06G3334 Fragaria x ananassa HOM05D002977 ORTHO05D003225 9.4e-51 205.3 453 39.5
FAN06G4128 Fragaria x ananassa HOM05D002977 ORTHO05D003225 9.4e-51 205.3 461 38.6
Gohir.A08G129200 Gossypium hirsutum HOM05D002977 ORTHO05D003225 1.0e-49 201.8 440 40.7
Gohir.D08G150500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 1.5e-48 198.0 441 39.7
Haze_15232 Corylus avellana HOM05D002977 ORTHO05D003225 7.5e-48 195.7 468 38.9
GSVIVG01027598001 Vitis vinifera HOM05D002977 ORTHO05D003225 6.3e-47 192.6 441 41.0
FAN01G0110 Fragaria x ananassa HOM05D002977 ORTHO05D003225 2.4e-46 190.7 481 37.6
Dinv43754 Davidia involucrata HOM05D002977 ORTHO05D003225 5.5e-43 179.5 434 38.5
Peaxi162Scf00021g00041 Petunia axillaris HOM05D002977 ORTHO05D003225 1.6e-42 177.9 458 39.1
Cfa004177 Carpinus fangiana HOM05D002977 ORTHO05D003225 2.7e-42 177.2 464 36.9
Hma1.2p1_0132F.1_g060810 Hydrangea macrophylla HOM05D002977 ORTHO05D003225 4.7e-42 176.4 436 38.8
TWI59G0633 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 2.0e-40 171.0 476 36.8
CANSAT56G0238 Cannabis sativa HOM05D002977 ORTHO05D003225 2.2e-39 167.5 449 37.4
Glyma.03G017800 Glycine max HOM05D002977 ORTHO05D003225 6.3e-39 166.0 466 35.6
PGSC0003DMG400017053 Solanum tuberosum HOM05D002977 ORTHO05D003225 1.2e-37 161.8 436 34.6
PGR042G2435 Punica granatum HOM05D002977 ORTHO05D003225 2.7e-37 160.6 461 33.4
VMungo0331G1467 Vigna mungo HOM05D002977 ORTHO05D003225 3.5e-37 160.2 462 36.6
Glyma.07G079500 Glycine max HOM05D002977 ORTHO05D003225 5.9e-37 159.5 470 36.8
Manes.01G262800 Manihot esculenta HOM05D002977 ORTHO05D003225 5.9e-37 159.5 436 35.6
Nitab4.5_0004550g0040 Nicotiana tabacum HOM05D002977 ORTHO05D003225 5.0e-36 156.4 450 37.6
Sopen01g037600 Solanum pennellii HOM05D002977 ORTHO05D003225 5.0e-36 156.4 437 33.6
Medtr8g032770 Medicago truncatula HOM05D002977 ORTHO05D003225 6.6e-36 156.0 473 34.9
Lalb_Chr10g0097561 Lupinus albus HOM05D002977 ORTHO05D003225 2.5e-35 154.1 452 35.6
CSS0040991 Camellia sinensis var. sinensis HOM05D002977 ORTHO05D003225 4.7e-34 149.8 451 33.7
CAN.G170.54 Capsicum annuum HOM05D002977 ORTHO05D003225 4.7e-34 149.8 452 35.0
Solyc01g091830.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 1.0e-33 148.7 441 33.6
Psat4g151680 Pisum sativum HOM05D002977 ORTHO05D003225 1.4e-33 148.3 461 37.7
DCAR_008585 Daucus carota HOM05D002977 ORTHO05D003225 2.3e-33 147.5 428 33.6
A03p32000 Brassica napus HOM05D002977 ORTHO05D003225 1.2e-32 145.2 457 34.4
Actinidia33447 Actinidia chinensis HOM05D002977 ORTHO05D003225 1.5e-32 144.8 443 33.6
BraA03t12372Z Brassica rapa HOM05D002977 ORTHO05D003225 1.5e-32 144.8 457 33.9
Peaxi162Scf00233g00015 Petunia axillaris HOM05D002977 ORTHO05D003225 4.4e-32 143.3 448 35.7
vmacro20976 Vaccinium macrocarpon HOM05D002977 ORTHO05D003225 4.4e-32 143.3 437 34.1
BcaC01g06858 Brassica carinata HOM05D002977 ORTHO05D003225 5.7e-32 142.9 473 32.6
C03p39020 Brassica napus HOM05D002977 ORTHO05D003225 2.2e-31 141.0 458 33.0
BolC3t16174H Brassica oleracea HOM05D002977 ORTHO05D003225 2.2e-31 141.0 458 33.0
Dinv37695 Davidia involucrata HOM05D002977 ORTHO05D003225 2.9e-31 140.6 479 33.2
Ca_23758_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 8.3e-31 139.0 467 37.5
Lj3g0026127 Lotus japonicus HOM05D002977 ORTHO05D003225 2.4e-30 137.5 468 33.5
Sp6g00770 Schrenkiella parvula HOM05D002977 ORTHO05D003225 7.0e-30 136.0 477 32.7
DCAR_006904 Daucus carota HOM05D002977 ORTHO05D003225 9.2e-30 135.6 431 33.2
Eucgr.E00281 Eucalyptus grandis HOM05D002977 ORTHO05D003225 1.2e-29 135.2 439 31.9
BcaB01g02155 Brassica carinata HOM05D002977 ORTHO05D003225 5.9e-29 132.9 462 33.8
TWI14G0163 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 5.9e-29 132.9 442 32.6
Thhalv10029270m.g Eutrema salsugineum HOM05D002977 ORTHO05D003225 7.8e-29 132.5 474 31.9
Nn6g34271 Nelumbo nucifera HOM05D002977 ORTHO05D003225 1.0e-28 132.1 503 31.6
Aqoxy7G00463 Aquilegia oxysepala HOM05D002977 ORTHO05D003225 3.9e-28 130.2 475 30.1
Nn1g01342 Nelumbo nucifera HOM05D002977 ORTHO05D003225 8.6e-28 129.0 498 31.3
Carub.0006s3643 Capsella rubella HOM05D002977 ORTHO05D003225 5.6e-27 126.3 483 31.3
AL6G52680 Arabidopsis lyrata HOM05D002977 ORTHO05D003225 7.3e-27 125.9 484 32.0
CiPaw.11G141500 Carya illinoinensis HOM05D002977 ORTHO05D003225 1.2e-26 125.2 501 32.1
Oeu059227.1 Olea europaea HOM05D002977 ORTHO05D003225 2.8e-26 124.0 429 35.0
CARHR248960 Cardamine hirsuta HOM05D002977 ORTHO05D003225 6.2e-26 122.9 477 32.3
Oeu059228.1 Olea europaea HOM05D002977 ORTHO05D003225 6.2e-26 122.9 428 35.5
THA.LOC104801463 Tarenaya hassleriana HOM05D002977 ORTHO05D003225 1.0e-25 122.1 491 31.2
Nitab4.5_0003356g0060 Nicotiana tabacum HOM05D002977 ORTHO05D003225 2.3e-25 120.9 432 33.8
arahy.Tifrunner.gnm1.ann1.YQQF81 Arachis hypogaea HOM05D002977 ORTHO05D003225 3.1e-25 120.6 485 31.1
Aa31LG5G240 Aethionema arabicum HOM05D002977 ORTHO05D003225 8.9e-25 119.0 511 28.4
AT4G00770 Arabidopsis thaliana HOM05D002977 ORTHO05D003225 8.9e-25 119.0 482 31.5
Phvul.010G089700 Phaseolus vulgaris HOM05D002977 ORTHO05D003225 1.5e-24 118.2 290 41.0
Manes.01G067700 Manihot esculenta HOM05D002977 ORTHO05D003225 2.6e-24 117.5 488 29.7
MBI12_g11809_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 7.5e-24 115.9 467 31.0
HanXRQChr06g0168991 Helianthus annuus HOM05D002977 ORTHO05D003225 2.2e-23 114.4 345 32.2
arahy.Tifrunner.gnm1.ann1.XNH79U Arachis hypogaea HOM05D002977 ORTHO05D003225 1.1e-22 112.1 484 30.0
Lsat_1_v5_gn_7_8261 Lactuca sativa HOM05D002977 ORTHO05D003225 1.1e-22 112.1 393 32.3
CsaV3_5G003260 Cucumis sativus L. HOM05D002977 ORTHO05D003225 1.4e-22 111.7 485 31.1
RcHm_v2.0_Chr7g0199421 Rosa chinensis HOM05D002977 ORTHO05D003225 5.4e-22 109.8 508 28.5
Duzib133G0091 Durio zibethinus HOM05D002977 ORTHO05D003225 9.2e-22 109.0 217 44.2
Nitab4.5_0000134g0230 Nicotiana tabacum HOM05D002977 ORTHO05D003225 1.2e-21 108.6 444 31.5
MSTRG.20788 Avicennia marina HOM05D002977 ORTHO05D003225 2.0e-21 107.8 433 31.9
Gohir.A08G178500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 2.0e-21 107.8 475 29.9
MELO3C005628.2 Cucumis melo HOM05D002977 ORTHO05D003225 4.6e-21 106.7 484 31.0
Haze_08955 Corylus avellana HOM05D002977 ORTHO05D003225 6.0e-21 106.3 481 31.8
Prupe.5G089800 Prunus persica HOM05D002977 ORTHO05D003225 7.8e-21 105.9 491 28.9
Oeu024421.1 Olea europaea HOM05D002977 ORTHO05D003225 1.0e-20 105.5 427 32.6
Oeu024422.1 Olea europaea HOM05D002977 ORTHO05D003225 5.0e-20 103.2 427 32.3
Migut.B01683 Erythranthe guttata HOM05D002977 ORTHO05D003225 6.6e-20 102.8 450 27.8
Gorai.004G207700 Gossypium raimondii HOM05D002977 ORTHO05D003225 1.9e-19 101.3 475 29.5
Thecc.03G270800 Theobroma cacao HOM05D002977 ORTHO05D003225 3.3e-19 100.5 494 27.9
ECA236G0338 Erigeron canadensis HOM05D002977 ORTHO05D003225 4.3e-19 100.1 356 28.9
MBI04_g42596_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 4.3e-19 100.1 470 29.4
Nitab4.5_0010430g0070 Nicotiana tabacum HOM05D002977 ORTHO05D003225 5.6e-19 99.8 230 40.0
FAN18G2499 Fragaria x ananassa HOM05D002524 ORTHO05D002718 9.5e-19 99.0 512 26.4
Cc02_g37200 Coffea canephora HOM05D002977 ORTHO05D003225 1.2e-18 98.6 446 29.8
FAN04G2551 Fragaria x ananassa HOM05D002524 ORTHO05D002718 1.2e-18 98.6 506 27.5
FAN13G0210 Fragaria x ananassa HOM05D002524 ORTHO05D002718 1.2e-18 98.6 471 25.9
Cfa012096 Carpinus fangiana HOM05D002524 ORTHO05D002718 2.8e-18 97.4 477 30.4
FvH4_5g01430 Fragaria vesca HOM05D002977 ORTHO05D003225 3.6e-18 97.1 501 27.1
TWI81G0253 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 6.2e-18 96.3 465 27.7
SalBow3G1388 Salvia bowleyana HOM05D002977 ORTHO05D003225 1.8e-17 94.7 437 29.5
Duzib084G1184 Durio zibethinus HOM05D002977 ORTHO05D003225 2.3e-17 94.4 493 27.0
Dinv39013 Davidia involucrata HOM05D002977 ORTHO05D003225 3.1e-17 94.0 457 31.1
Gohir.D08G197000 Gossypium hirsutum HOM05D002977 ORTHO05D003225 3.1e-17 94.0 473 28.1
Sabra03G0085100 Salix brachista HOM05D002977 ORTHO05D003225 1.2e-16 92.0 495 28.9
Gorai.008G243500 Gossypium raimondii HOM05D002977 ORTHO05D003225 2.0e-16 91.3 451 29.3
CiPaw.02G024700 Carya illinoinensis HOM05D002977 ORTHO05D003225 4.4e-16 90.1 219 36.5
ClCG01G003130 Citrullus lanatus HOM05D002977 ORTHO05D003225 9.8e-16 89.0 462 27.7
EL10Ac1g00967 Beta vulgaris HOM05D002977 ORTHO05D003225 1.7e-15 88.2 455 27.5
Gohir.D12G227500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 2.2e-15 87.8 451 28.6
Hund28360 Selenicereus undatus HOM05D002977 ORTHO05D003225 2.9e-15 87.4 447 31.8
Hund28364 Selenicereus undatus HOM05D002977 ORTHO05D003225 2.9e-15 87.4 447 31.8
TAR629G3293 Trochodendron aralioides HOM05D002977 ORTHO05D003225 4.9e-15 86.7 461 31.5
Atru.chr9.1537 Acer truncatum HOM05D002977 ORTHO05D003225 6.4e-15 86.3 490 30.0
CANSAT21G2154 Cannabis sativa HOM05D002977 ORTHO05D003225 6.4e-15 86.3 512 25.6
CsaV3_3G009320 Cucumis sativus L. HOM05D002977 ORTHO05D003225 1.4e-14 85.1 413 27.1
Actinidia02049 Actinidia chinensis HOM05D002977 ORTHO05D003225 1.9e-14 84.7 489 28.2
Sabra01G0084500 Salix brachista HOM05D002977 ORTHO05D003225 2.4e-14 84.3 492 27.4
TWI60G0323 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 3.2e-14 84.0 496 28.2
Migut.E01299 Erythranthe guttata HOM05D002977 ORTHO05D003225 5.4e-14 83.2 477 26.8
Duzib205G0359 Durio zibethinus HOM05D002977 ORTHO05D003225 7.1e-14 82.8 493 27.8
QL12p017099 Quercus lobata HOM05D002977 ORTHO05D003225 9.2e-14 82.4 518 27.2
FAN08G2595 Fragaria x ananassa HOM05D002524 ORTHO05D002718 1.2e-13 82.0 499 25.9
Peaxi162Scf00714g00621 Petunia axillaris HOM05D002977 ORTHO05D003225 3.5e-13 80.5 492 28.5
Manes.02G027900 Manihot esculenta HOM05D002977 ORTHO05D003225 4.6e-13 80.1 493 26.8
Gohir.A12G224700 Gossypium hirsutum HOM05D002977 ORTHO05D003225 6.0e-13 79.7 454 28.6
SGA_v2.0_scaffold196G40889 Striga asiatica HOM05D002977 ORTHO05D003225 6.0e-13 79.7 488 26.8
AUR62010660 Chenopodium quinoa HOM05D002977 ORTHO05D003225 7.8e-13 79.3 452 28.8
GSVIVG01019863001 Vitis vinifera HOM05D002977 ORTHO05D003225 7.8e-13 79.3 267 37.1
ECA233G2885 Erigeron canadensis HOM05D002977 ORTHO05D003225 1.0e-12 79.0 452 26.5
Lj2A196T48 Lonicera japonica HOM05D002977 ORTHO05D003225 1.7e-12 78.2 302 34.1
Ah.16g108930 Amaranthus hybridus HOM05D002977 ORTHO05D003225 2.3e-12 77.8 293 31.1
PGR042G2476 Punica granatum HOM05D002977 ORTHO05D003225 3.9e-12 77.0 512 26.4
TPR.G37675 Trifolium pratense HOM05D002977 ORTHO05D003225 3.9e-12 77.0 461 27.3
MSTRG.25572 Avicennia marina HOM05D002977 ORTHO05D003225 5.1e-12 76.6 501 26.1
SGA_v2.0_scaffold153G37063 Striga asiatica HOM05D002977 ORTHO05D003225 5.1e-12 76.6 442 28.3
COL.COLO4_05272 Corchorus olitorius HOM05D002977 ORTHO05D003225 6.6e-12 76.3 466 26.8
Cc08_g13950 Coffea canephora HOM05D002977 ORTHO05D003225 1.9e-11 74.7 495 27.1
Psat4g067560 Pisum sativum HOM05D002977 ORTHO05D003225 7.3e-11 72.8 449 26.3
Potri.001G110900 Populus trichocarpa HOM05D002977 ORTHO05D003225 7.3e-11 72.8 489 27.4
Lsat_1_v5_gn_6_13021 Lactuca sativa HOM05D002977 ORTHO05D003225 9.5e-11 72.4 495 26.1
CARHR254530 Cardamine hirsuta HOM05D002977 ORTHO05D003225 1.2e-10 72.0 473 25.6
Potri.003G121100 Populus trichocarpa HOM05D002977 ORTHO05D003225 1.6e-10 71.6 494 26.1
VMungo1215G3066 Vigna mungo HOM05D002977 ORTHO05D003225 2.1e-10 71.2 479 25.7
Ah.02g116430 Amaranthus hybridus HOM05D002977 ORTHO05D003225 4.7e-10 70.1 498 27.5
THA.LOC104806370 Tarenaya hassleriana HOM05D002977 ORTHO05D003225 6.2e-10 69.7 472 24.4
CiPaw.12G098800 Carya illinoinensis HOM05D002977 ORTHO05D003225 1.1e-09 68.9 496 26.8
ClCG05G001920 Citrullus lanatus HOM05D002977 ORTHO05D003225 1.1e-09 68.9 408 25.5
Lalb_Chr05g0225091 Lupinus albus HOM05D002977 ORTHO05D003225 2.3e-09 67.8 476 26.1
Solyc08g080280.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 6.8e-09 66.2 481 26.2
Sopen08g028630 Solanum pennellii HOM05D002977 ORTHO05D003225 8.9e-09 65.9 492 26.0
Ciclev10023936m.g Citrus clementina HOM05D002977 ORTHO05D003225 1.5e-08 65.1 226 37.6
Ah.12g057650 Amaranthus hybridus HOM05D002977 ORTHO05D003225 2.6e-08 64.3 446 28.9
MELO3C006152.2 Cucumis melo HOM05D002977 ORTHO05D003225 3.4e-08 63.9 221 32.1
Nitab4.5_0011100g0010 Nicotiana tabacum HOM05D002977 ORTHO05D003225 3.4e-08 63.9 511 30.1
Hund16963 Selenicereus undatus HOM05D002977 ORTHO05D003225 3.4e-08 63.9 442 27.1
Sed0005409 Sechium edule HOM05D002977 ORTHO05D003225 4.4e-08 63.5 465 28.0
Ca_20242_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 5.8e-08 63.2 431 25.5
Ca_29496_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 5.8e-08 63.2 431 25.5
Lj4g0001816 Lotus japonicus HOM05D002977 ORTHO05D003225 5.8e-08 63.2 459 25.1
BcaB05g23809 Brassica carinata HOM05D002977 ORTHO05D003225 7.6e-08 62.8 496 25.4
HanXRQChr07g0188421 Helianthus annuus HOM05D002977 ORTHO05D003225 1.3e-07 62.0 464 24.8
Aa31LG9G10650 Aethionema arabicum HOM05D002977 ORTHO05D003225 2.2e-07 61.2 479 26.3
BraA09t38300Z Brassica rapa HOM05D002977 ORTHO05D003225 2.2e-07 61.2 485 25.4
Sed0021237 Sechium edule HOM05D002977 ORTHO05D003225 2.2e-07 61.2 372 24.5
Medtr4g102650 Medicago truncatula HOM05D002977 ORTHO05D003225 2.9e-07 60.8 462 26.2
CAN.G981.38 Capsicum annuum HOM05D002977 ORTHO05D003225 6.4e-07 59.7 478 24.3
Glyma.17G132000 Glycine max HOM05D002977 ORTHO05D003225 8.4e-07 59.3 472 24.4
MD04G1068300 Malus domestica HOM05D002977 ORTHO05D003225 8.4e-07 59.3 209 32.5
Lsat_1_v5_gn_3_5860 Lactuca sativa HOM05D002524 ORTHO05D002718 1.1e-06 58.9 455 24.0
Nitab4.5_0001714g0160 Nicotiana tabacum HOM05D002977 ORTHO05D003225 1.4e-06 58.5 514 29.2
Glyma.05G050000 Glycine max HOM05D002977 ORTHO05D003225 2.4e-06 57.8 483 24.4
Actinidia14518 Actinidia chinensis HOM05D000078 ORTHO05D003225 3.2e-06 57.4 316 28.8
AUR62033369 Chenopodium quinoa HOM05D049868 ORTHO05D003225 4.1e-06 57.0 397 26.7
Phvul.003G212900 Phaseolus vulgaris HOM05D002977 ORTHO05D003225 4.1e-06 57.0 487 23.2
CSS0002536 Camellia sinensis var. sinensis HOM05D002977 ORTHO05D003225 5.4e-06 56.6 426 28.6
Sp6g05680 Schrenkiella parvula HOM05D002977 ORTHO05D003225 7.1e-06 56.2 485 24.3


User provided reference genes

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