Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10020232m.g Citrus clementina HOM05D005563 ORTHO05D006667 5.1e-254 880.6 432 100.0
Cfa007306 Carpinus fangiana HOM05D005563 ORTHO05D006667 1.4e-158 563.5 411 68.1
GSVIVG01037139001 Vitis vinifera HOM05D005563 ORTHO05D006667 4.4e-157 558.5 409 67.0
Prupe.8G002700 Prunus persica HOM05D005563 ORTHO05D006667 5.8e-157 558.1 412 65.5
Dinv22054 Davidia involucrata HOM05D005563 ORTHO05D006667 1.6e-154 550.1 418 65.1
QL09p001227 Quercus lobata HOM05D005563 ORTHO05D006667 3.5e-154 548.9 412 67.2
CiPaw.04G008700 Carya illinoinensis HOM05D005563 ORTHO05D006667 5.0e-153 545.0 425 65.6
RcHm_v2.0_Chr6g0249561 Rosa chinensis HOM05D005563 ORTHO05D006667 1.1e-152 543.9 418 63.2
CSS0040007 Camellia sinensis var. sinensis HOM05D005563 ORTHO05D006667 1.4e-150 537.0 426 62.0
CSS0002080 Camellia sinensis var. sinensis HOM05D005563 ORTHO05D006667 2.6e-149 532.7 426 61.5
Atru.chr13.2584 Acer truncatum HOM05D005563 ORTHO05D006667 3.4e-149 532.3 433 61.0
Potri.013G094800 Populus trichocarpa HOM05D005563 ORTHO05D006667 1.3e-148 530.4 412 65.3
TAR628G0232 Trochodendron aralioides HOM05D005563 ORTHO05D006667 1.2e-146 523.9 413 63.2
Haze_14007 Corylus avellana HOM05D005563 ORTHO05D006667 1.3e-145 520.4 519 53.9
Thecc.05G149300 Theobroma cacao HOM05D005563 ORTHO05D006667 3.6e-143 512.3 420 62.4
MD10G1001500 Malus domestica HOM05D005563 ORTHO05D006667 4.7e-143 511.9 413 62.2
Sabra13G0080900 Salix brachista HOM05D005563 ORTHO05D006667 1.4e-142 510.4 411 64.0
FvH4_2g00270 Fragaria vesca HOM05D005563 ORTHO05D006667 3.1e-142 509.2 413 60.0
CANSAT64G1925 Cannabis sativa HOM05D005563 ORTHO05D006667 8.9e-142 507.7 410 61.7
Duzib177G0343 Durio zibethinus HOM05D005563 ORTHO05D006667 9.9e-141 504.2 404 62.4
Actinidia29363 Actinidia chinensis HOM05D005563 ORTHO05D006667 1.3e-140 503.8 411 61.6
FAN24G3564 Fragaria x ananassa HOM05D005563 ORTHO05D006667 7.1e-139 498.0 432 57.2
Nn5g27214 Nelumbo nucifera HOM05D005563 ORTHO05D006667 7.1e-139 498.0 415 62.4
Rhsim01G0058900 Rhododendron simsii HOM05D005563 ORTHO05D006667 1.7e-137 493.4 429 59.2
vmacro07741 Vaccinium macrocarpon HOM05D005563 ORTHO05D006667 6.6e-137 491.5 427 59.5
Gorai.009G262600 Gossypium raimondii HOM05D005563 ORTHO05D006667 2.5e-136 489.6 401 61.1
ClCG11G000440 Citrullus lanatus HOM05D005563 ORTHO05D006667 1.2e-135 487.3 410 61.7
arahy.Tifrunner.gnm1.ann1.QV839S Arachis hypogaea HOM05D005563 ORTHO05D006667 1.6e-135 486.9 413 60.3
Rhsim01G0059200 Rhododendron simsii HOM05D005563 ORTHO05D006667 2.1e-135 486.5 429 58.5
Glyma.13G312100 Glycine max HOM05D005563 ORTHO05D006667 1.8e-134 483.4 413 60.5
Lalb_Chr24g0393341 Lupinus albus HOM05D005563 ORTHO05D006667 3.4e-133 479.2 431 57.8
Oeu019017.1 Olea europaea HOM05D005563 ORTHO05D006667 2.9e-132 476.1 424 57.8
PGR044G0823 Punica granatum HOM05D005563 ORTHO05D006667 2.9e-132 476.1 409 59.9
Oeu009445.1 Olea europaea HOM05D005563 ORTHO05D006667 6.4e-132 474.9 413 58.1
Lj3g0011209 Lotus japonicus HOM05D005563 ORTHO05D006667 1.9e-131 473.4 426 59.2
Cc02_g22680 Coffea canephora HOM05D005563 ORTHO05D006667 6.6e-129 464.9 412 55.8
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 6.6e-129 464.9 398 57.5
VMungo1080G1448 Vigna mungo HOM05D005563 ORTHO05D006667 3.3e-128 462.6 409 59.2
CsaV3_6G042510 Cucumis sativus L. HOM05D005563 ORTHO05D006667 7.3e-128 461.5 410 59.3
DCAR_027509 Daucus carota HOM05D005563 ORTHO05D006667 2.1e-127 459.9 428 56.8
DCAR_010113 Daucus carota HOM05D005563 ORTHO05D006667 3.6e-127 459.1 430 56.5
DCAR_001180 Daucus carota HOM05D005563 ORTHO05D006667 4.8e-127 458.8 428 56.5
Phvul.005G118600 Phaseolus vulgaris HOM05D005563 ORTHO05D006667 8.1e-127 458.0 411 58.9
TPR.G23443 Trifolium pratense HOM05D005563 ORTHO05D006667 1.2e-125 454.1 436 56.9
Nitab4.5_0006591g0020 Nicotiana tabacum HOM05D005563 ORTHO05D006667 4.4e-125 452.2 411 57.7
Aqoxy1G00244 Aquilegia oxysepala HOM05D005563 ORTHO05D006667 6.4e-124 448.4 411 55.5
Thhalv10018623m.g Eutrema salsugineum HOM05D005563 ORTHO05D006667 2.1e-122 443.4 411 56.0
Medtr8g103020 Medicago truncatula HOM05D005563 ORTHO05D006667 2.7e-122 443.0 419 57.0
Migut.G00338 Erythranthe guttata HOM05D005563 ORTHO05D006667 3.5e-122 442.6 408 54.9
TAR633G2728 Trochodendron aralioides HOM05D005563 ORTHO05D006667 4.6e-122 442.2 418 54.5
BcaB03g14889 Brassica carinata HOM05D005563 ORTHO05D006667 5.1e-121 438.7 414 55.6
SGA_v2.0_scaffold277G46672 Striga asiatica HOM05D005563 ORTHO05D006667 8.7e-121 438.0 417 55.2
Sp5g26490 Schrenkiella parvula HOM05D005563 ORTHO05D006667 1.5e-120 437.2 410 55.1
A07p30780 Brassica napus HOM05D005563 ORTHO05D006667 3.3e-120 436.0 405 55.6
CARHR064610 Cardamine hirsuta HOM05D005563 ORTHO05D006667 3.3e-120 436.0 416 54.1
CAN.G587.23 Capsicum annuum HOM05D005563 ORTHO05D006667 4.3e-120 435.6 412 55.8
AL2G30920 Arabidopsis lyrata HOM05D005563 ORTHO05D006667 5.6e-120 435.3 422 54.0
Psat7g014680 Pisum sativum HOM05D005563 ORTHO05D006667 9.6e-120 434.5 435 54.3
Manes.18G108800 Manihot esculenta HOM05D005563 ORTHO05D006667 1.6e-119 433.7 366 62.8
Hund26934 Selenicereus undatus HOM05D005563 ORTHO05D006667 2.8e-119 433.0 421 55.1
THA.LOC104825030 Tarenaya hassleriana HOM05D005563 ORTHO05D006667 2.8e-119 433.0 421 54.4
Aa31LG4G9220 Aethionema arabicum HOM05D005563 ORTHO05D006667 4.8e-119 432.2 409 54.8
CAN.G769.9 Capsicum annuum HOM05D005563 ORTHO05D006667 4.8e-119 432.2 417 55.9
AL1G12770 Arabidopsis lyrata HOM05D005563 ORTHO05D006667 1.4e-118 430.6 422 53.3
PSO761G0451 Papaver somniferum HOM05D005563 ORTHO05D006667 1.4e-118 430.6 419 54.4
C06p35680 Brassica napus HOM05D005563 ORTHO05D006667 4.0e-118 429.1 407 54.5
BcaC08g45784 Brassica carinata HOM05D005563 ORTHO05D006667 5.3e-118 428.7 427 52.5
BraA07t30715Z Brassica rapa HOM05D005563 ORTHO05D006667 6.9e-118 428.3 409 54.8
Eucgr.G00337 Eucalyptus grandis HOM05D005563 ORTHO05D006667 1.2e-117 427.6 410 55.9
TWI18G0160 Tripterygium wilfordii HOM05D005563 ORTHO05D006667 2.0e-117 426.8 422 55.7
BcaB03g15600 Brassica carinata HOM05D005563 ORTHO05D006667 4.5e-117 425.6 411 54.5
Carub.0002s1819 Capsella rubella HOM05D005563 ORTHO05D006667 4.5e-117 425.6 421 53.2
Solyc03g026100.1 Solanum lycopersicum HOM05D005563 ORTHO05D006667 4.5e-117 425.6 417 55.6
BolC6t38691H Brassica oleracea HOM05D005563 ORTHO05D006667 5.8e-117 425.2 411 54.0
AT5G24670 Arabidopsis thaliana HOM05D005563 ORTHO05D006667 7.6e-117 424.9 421 52.7
PSO170G2533 Papaver somniferum HOM05D005563 ORTHO05D006667 7.6e-117 424.9 424 53.1
PGSC0003DMG400014277 Solanum tuberosum HOM05D005563 ORTHO05D006667 7.6e-117 424.9 417 56.1
Sopen03g004940 Solanum pennellii HOM05D005563 ORTHO05D006667 1.4e-115 420.6 417 55.4
arahy.Tifrunner.gnm1.ann1.NB4SND Arachis hypogaea HOM05D005563 ORTHO05D006667 2.1e-114 416.8 431 53.8
Carub.0004s0662 Capsella rubella HOM05D005563 ORTHO05D006667 6.0e-114 415.2 407 53.8
MBI14_g08074_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 1.1e-112 411.0 385 57.7
Lsat_1_v5_gn_4_170241 Lactuca sativa HOM05D005563 ORTHO05D006667 5.8e-109 398.7 409 51.3
PSO017G5640 Papaver somniferum HOM05D005563 ORTHO05D006667 1.0e-108 397.9 421 50.6
PSO407G0243 Papaver somniferum HOM05D005563 ORTHO05D006667 1.3e-108 397.5 423 51.3
Sed0012109 Sechium edule HOM05D005563 ORTHO05D006667 3.8e-108 396.0 333 63.1
Nitab4.5_0001489g0080 Nicotiana tabacum HOM05D005563 ORTHO05D006667 1.6e-106 390.6 372 56.7
AUR62023340 Chenopodium quinoa HOM05D005563 ORTHO05D006667 3.0e-105 386.3 411 51.1
MELO3C022956.2 Cucumis melo HOM05D005563 ORTHO05D006667 1.3e-103 380.9 357 57.7
Nitab4.5_0000079g0140 Nicotiana tabacum HOM05D005563 ORTHO05D006667 5.3e-102 375.6 398 52.8
Peaxi162Scf00078g01133 Petunia axillaris HOM05D005563 ORTHO05D006667 5.3e-102 375.6 358 55.6
HanXRQChr15g0488461 Helianthus annuus HOM05D005563 ORTHO05D006667 2.0e-101 373.6 346 56.4
AUR62013814 Chenopodium quinoa HOM05D005563 ORTHO05D006667 4.2e-99 365.9 497 43.5
ATR0580G344 Amborella trichopoda HOM05D005563 ORTHO05D006667 7.9e-98 361.7 429 47.3
unitig_32.g10817 Utricularia gibba HOM05D005563 ORTHO05D006667 1.0e-97 361.3 382 49.7
Gohir.A05G248000 Gossypium hirsutum HOM05D005563 ORTHO05D006667 2.8e-95 353.2 315 57.1
Gohir.D05G248801 Gossypium hirsutum HOM05D005563 ORTHO05D006667 2.4e-94 350.1 315 56.8
FAN19G1429 Fragaria x ananassa HOM05D005563 ORTHO05D006667 8.8e-89 331.6 442 44.6
BcaB03g14888 Brassica carinata HOM05D005563 ORTHO05D006667 5.9e-85 318.9 359 49.3
EL10Ac1g00691 Beta vulgaris HOM05D005563 ORTHO05D006667 5.5e-83 312.4 365 50.4
TPR.G11352 Trifolium pratense HOM05D005563 ORTHO05D006667 1.2e-82 311.2 312 54.5
AUR62037990 Chenopodium quinoa HOM05D005563 ORTHO05D006667 1.0e-81 308.1 309 53.1
Eucgr.C03620 Eucalyptus grandis HOM05D005563 ORTHO05D006667 3.8e-76 289.7 285 52.6
COL.COLO4_34067 Corchorus olitorius HOM05D005563 ORTHO05D006667 1.1e-75 288.1 314 50.3
Sc19g0006900 Simmondsia chinensis HOM05D005563 ORTHO05D006667 2.6e-72 276.9 290 51.0
Cpa.g.sc249.8 Carica papaya HOM05D005563 ORTHO05D006667 4.7e-66 256.1 166 72.9
BolC6t39597H Brassica oleracea HOM05D005563 ORTHO05D006667 2.0e-64 250.8 349 44.7
Ca_17321_v3 Cicer arietinum L. HOM05D005563 ORTHO05D006667 3.5e-61 240.0 330 47.6
Mapoly0019s0003 Marchantia polymorpha HOM05D005563 ORTHO05D006667 1.0e-57 228.4 430 37.2
CDE04G2046 Ceratophyllum demersum HOM05D005563 ORTHO05D006667 1.4e-57 228.0 283 47.3
SMO356G0078 Selaginella moellendorffii HOM05D005563 ORTHO05D006667 2.0e-56 224.2 407 35.9
AagrBONN_evm.TU.Sc2ySwM_344.1216 Anthoceros agrestis HOM05D005563 ORTHO05D006667 5.7e-56 222.6 487 33.9
SHI17431 Sapria himalayana HOM05D005563 ORTHO05D006667 9.8e-56 221.9 275 45.5
Pp3c5_5220 Physcomitrium patens HOM05D005563 ORTHO05D006667 1.2e-53 214.9 399 36.1
Zm00001eb088860 Zea mays HOM05D005563 ORTHO05D006667 2.6e-48 197.2 265 44.5
HPP92_009712 Vanilla planifolia HOM05D005563 ORTHO05D006667 4.4e-48 196.4 256 45.7
Eucgr.C03478 Eucalyptus grandis HOM05D005563 ORTHO05D006667 1.0e-36 158.7 261 40.2
Actinidia03534 Actinidia chinensis HOM05D005563 ORTHO05D006667 3.9e-36 156.8 244 40.2
MBI14_g20078_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 2.1e-34 151.0 86 81.4
MCO11G544 Micromonas commoda HOM05D005563 ORTHO05D006667 6.2e-34 149.4 366 28.7
MBI08_g10505_MAGBIO Magnolia biondii HOM05D000152 ORTHO05D006667 1.1e-33 148.7 99 73.7
MBI13_g08747_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 2.3e-33 147.5 91 74.7
TPR.G11340 Trifolium pratense HOM05D005563 ORTHO05D006667 5.2e-33 146.4 84 81.0
MBI15_g36474_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 1.2e-32 145.2 93 72.0
Eucgr.L00998 Eucalyptus grandis HOM05D005563 ORTHO05D006667 2.9e-31 140.6 196 43.4
CBR_g50242 Chara braunii HOM05D005563 ORTHO05D006667 1.1e-30 138.7 582 25.4
Eucgr.C03640 Eucalyptus grandis HOM05D005563 ORTHO05D006667 9.2e-30 135.6 107 63.6
Thecc.10G189600 Theobroma cacao HOM05D005563 ORTHO05D006667 9.2e-30 135.6 109 62.4
DCAR_001179 Daucus carota HOM05D005563 ORTHO05D006667 1.5e-27 128.3 163 44.2
C06p46160 Brassica napus HOM05D005563 ORTHO05D006667 3.3e-27 127.1 193 42.5
CBR_g8323 Chara braunii HOM05D005563 ORTHO05D006667 9.9e-24 115.5 611 24.2
Cre10.g439200 Chlamydomonas reinhardtii HOM05D005563 ORTHO05D006667 6.6e-20 102.8 450 24.0
FAN20G2324 Fragaria x ananassa HOM05D005563 ORTHO05D006667 6.6e-20 102.8 58 77.6
Thecc.10G189700 Theobroma cacao HOM05D005563 ORTHO05D006667 2.1e-18 97.8 114 44.7
Haze_14787 Corylus avellana HOM05D005563 ORTHO05D006667 4.0e-17 93.6 233 35.2
Eucgr.C03636 Eucalyptus grandis HOM05D005563 ORTHO05D006667 2.4e-14 84.3 179 34.6
PRCOL_00003298 Prasinoderma coloniale HOM05D005563 ORTHO05D006667 2.3e-12 77.8 146 32.2
SHI17433 Sapria himalayana HOM05D005563 ORTHO05D006667 1.1e-11 75.5 62 54.8
Actinidia28221 Actinidia chinensis HOM05D005563 ORTHO05D006667 2.5e-11 74.3 79 50.6
SHI17432 Sapria himalayana HOM05D005563 ORTHO05D006667 3.8e-07 60.5 45 64.4


User provided reference genes

Program Settings