Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10020231m.g Citrus clementina HOM05D001772 ORTHO05D008903 3.0e-254 881.3 433 100.0
Potri.014G096700 Populus trichocarpa HOM05D001772 ORTHO05D008903 6.7e-190 667.5 436 75.2
Dinv18731 Davidia involucrata HOM05D001772 ORTHO05D008903 1.5e-189 666.4 439 74.3
Manes.05G024600 Manihot esculenta HOM05D001772 ORTHO05D008903 1.5e-189 666.4 435 74.7
Thecc.01G344900 Theobroma cacao HOM05D001772 ORTHO05D008903 2.6e-189 665.6 443 73.6
Atru.chr5.644 Acer truncatum HOM05D001772 ORTHO05D008903 1.1e-187 660.2 438 74.7
GSVIVG01027076001 Vitis vinifera HOM05D001772 ORTHO05D008903 1.2e-186 656.8 436 72.7
Sabra14G0070800 Salix brachista HOM05D001772 ORTHO05D008903 5.9e-186 654.4 426 75.4
Gohir.A12G111500 Gossypium hirsutum HOM05D001772 ORTHO05D008903 8.5e-185 650.6 436 72.7
Gohir.D12G114800 Gossypium hirsutum HOM05D001772 ORTHO05D008903 1.5e-184 649.8 436 72.5
Gorai.008G124300 Gossypium raimondii HOM05D001772 ORTHO05D008903 2.1e-183 646.0 436 71.8
QL04p013773 Quercus lobata HOM05D001772 ORTHO05D008903 1.5e-181 639.8 433 71.4
Cfa003819 Carpinus fangiana HOM05D001772 ORTHO05D008903 2.0e-181 639.4 428 73.1
RcHm_v2.0_Chr1g0359211 Rosa chinensis HOM05D001772 ORTHO05D008903 1.3e-180 636.7 435 71.3
TAR375G0197 Trochodendron aralioides HOM05D001772 ORTHO05D008903 2.0e-178 629.4 438 70.5
CANSAT56G1679 Cannabis sativa HOM05D001772 ORTHO05D008903 4.5e-178 628.2 441 69.2
CSS0012714 Camellia sinensis var. sinensis HOM05D001772 ORTHO05D008903 1.0e-177 627.1 436 69.5
TWI59G0809 Tripterygium wilfordii HOM05D001772 ORTHO05D008903 1.0e-177 627.1 436 70.9
THA.LOC104825876 Tarenaya hassleriana HOM05D001772 ORTHO05D008903 1.2e-175 620.2 434 68.2
Aa31LG5G920 Aethionema arabicum HOM05D001772 ORTHO05D008903 4.7e-175 618.2 436 67.9
MD07G1147600 Malus domestica HOM05D001772 ORTHO05D008903 1.4e-174 616.7 434 70.7
Prupe.2G185600 Prunus persica HOM05D001772 ORTHO05D008903 1.8e-174 616.3 435 71.0
COL.COLO4_06307 Corchorus olitorius HOM05D001772 ORTHO05D008903 4.4e-173 611.7 436 70.0
Duzib138G1524 Durio zibethinus HOM05D001772 ORTHO05D008903 4.4e-173 611.7 434 69.1
Aqoxy7G00133 Aquilegia oxysepala HOM05D001772 ORTHO05D008903 4.9e-172 608.2 442 67.2
CANSAT56G1036 Cannabis sativa HOM05D001772 ORTHO05D008903 1.4e-171 606.7 429 68.5
AT4G01040 Arabidopsis thaliana HOM05D001772 ORTHO05D008903 1.8e-171 606.3 435 67.6
TPR.G8988 Trifolium pratense HOM05D001772 ORTHO05D008903 7.0e-171 604.4 435 66.7
FvH4_7g16200 Fragaria vesca HOM05D001772 ORTHO05D008903 1.2e-170 603.6 436 69.5
vmacro13174 Vaccinium macrocarpon HOM05D001772 ORTHO05D008903 1.3e-169 600.1 436 68.1
Carub.0006s3610 Capsella rubella HOM05D001772 ORTHO05D008903 3.9e-169 598.6 435 65.7
MD01G1078600 Malus domestica HOM05D001772 ORTHO05D008903 1.9e-168 596.3 435 69.2
Psat2g145680 Pisum sativum HOM05D001772 ORTHO05D008903 1.9e-168 596.3 435 66.0
Sp6g01100 Schrenkiella parvula HOM05D001772 ORTHO05D008903 3.3e-168 595.5 436 65.8
PGR042G2345 Punica granatum HOM05D001772 ORTHO05D008903 5.6e-168 594.7 434 65.7
Haze_15635 Corylus avellana HOM05D001772 ORTHO05D008903 3.6e-167 592.0 449 67.0
Thhalv10028671m.g Eutrema salsugineum HOM05D001772 ORTHO05D008903 4.7e-167 591.7 416 67.1
CARHR249250 Cardamine hirsuta HOM05D001772 ORTHO05D008903 1.0e-166 590.5 437 64.8
Medtr5g025480 Medicago truncatula HOM05D001772 ORTHO05D008903 1.8e-166 589.7 437 67.0
Ca_25036_v3 Cicer arietinum L. HOM05D001772 ORTHO05D008903 1.5e-165 586.6 435 65.5
Eucgr.E00067 Eucalyptus grandis HOM05D001772 ORTHO05D008903 1.5e-165 586.6 439 66.7
Nn3g19051 Nelumbo nucifera HOM05D001772 ORTHO05D008903 3.4e-165 585.5 427 66.7
FAN01G1646 Fragaria x ananassa HOM05D001772 ORTHO05D008903 5.8e-165 584.7 434 68.0
FAN03G0169 Fragaria x ananassa HOM05D001772 ORTHO05D008903 2.9e-164 582.4 435 67.6
Lj1g0009750 Lotus japonicus HOM05D001772 ORTHO05D008903 3.7e-164 582.0 426 66.0
Lalb_Chr04g0261581 Lupinus albus HOM05D001772 ORTHO05D008903 1.4e-163 580.1 418 67.7
FAN06G2365 Fragaria x ananassa HOM05D001772 ORTHO05D008903 4.6e-162 575.1 430 67.7
arahy.Tifrunner.gnm1.ann1.NY4TXX Arachis hypogaea HOM05D001772 ORTHO05D008903 7.8e-162 574.3 447 63.1
Rhsim07G0005700 Rhododendron simsii HOM05D001772 ORTHO05D008903 1.0e-161 573.9 441 65.1
arahy.Tifrunner.gnm1.ann1.HV5NER Arachis hypogaea HOM05D001772 ORTHO05D008903 2.3e-161 572.8 444 63.3
FAN06G4998 Fragaria x ananassa HOM05D001772 ORTHO05D008903 1.5e-160 570.1 426 67.8
C03p38820 Brassica napus HOM05D001772 ORTHO05D008903 5.6e-160 568.2 428 64.7
BcaC01g06839 Brassica carinata HOM05D001772 ORTHO05D008903 2.1e-159 566.2 430 64.2
BolC3t16157H Brassica oleracea HOM05D001772 ORTHO05D008903 2.1e-159 566.2 429 64.6
VMungo0540G0918 Vigna mungo HOM05D001772 ORTHO05D008903 1.4e-158 563.5 435 65.1
BcaB01g02345 Brassica carinata HOM05D001772 ORTHO05D008903 2.3e-158 562.8 428 65.0
A03p31810 Brassica napus HOM05D001772 ORTHO05D008903 1.2e-157 560.5 428 64.0
BraA03t12356Z Brassica rapa HOM05D001772 ORTHO05D008903 1.2e-157 560.5 428 64.3
CSS0002891 Camellia sinensis var. sinensis HOM05D001772 ORTHO05D008903 1.5e-157 560.1 401 67.6
ClCG05G000920 Citrullus lanatus HOM05D001772 ORTHO05D008903 1.5e-157 560.1 435 64.8
FAN10G2954 Fragaria x ananassa HOM05D001772 ORTHO05D008903 1.5e-157 560.1 397 69.5
Lsat_1_v5_gn_3_139600 Lactuca sativa HOM05D001772 ORTHO05D008903 1.1e-155 553.9 446 62.6
CsaV3_3G008150 Cucumis sativus L. HOM05D001772 ORTHO05D008903 4.1e-155 552.0 436 65.1
CAN.G239.5 Capsicum annuum HOM05D001772 ORTHO05D008903 4.6e-154 548.5 441 60.5
EL10Ac1g00295 Beta vulgaris HOM05D001772 ORTHO05D008903 7.8e-154 547.7 441 60.5
PSO135G0498 Papaver somniferum HOM05D001772 ORTHO05D008903 7.8e-154 547.7 389 67.4
Sopen05g028720 Solanum pennellii HOM05D001772 ORTHO05D008903 1.3e-153 547.0 414 63.5
Oeu007903.1 Olea europaea HOM05D001772 ORTHO05D008903 1.1e-152 543.9 440 60.9
Glyma.03G256800 Glycine max HOM05D001772 ORTHO05D008903 3.3e-152 542.3 425 64.7
MBI06_g46729_MAGBIO Magnolia biondii HOM05D001772 ORTHO05D008903 9.5e-152 540.8 467 58.9
Sc01g0002840 Simmondsia chinensis HOM05D001772 ORTHO05D008903 9.5e-152 540.8 436 61.2
AUR62004469 Chenopodium quinoa HOM05D001772 ORTHO05D008903 1.6e-151 540.0 435 60.7
PSO384G4631 Papaver somniferum HOM05D001772 ORTHO05D008903 8.1e-151 537.7 389 66.6
Cc02_g39160 Coffea canephora HOM05D001772 ORTHO05D008903 1.4e-150 537.0 440 61.4
AUR62023481 Chenopodium quinoa HOM05D001772 ORTHO05D008903 5.8e-149 531.6 429 60.6
PGSC0003DMG402033880 Solanum tuberosum HOM05D001772 ORTHO05D008903 1.7e-148 530.0 364 67.9
Sed0004684 Sechium edule HOM05D001772 ORTHO05D008903 2.2e-148 529.6 389 67.6
Cpa.g.sc273.9 Carica papaya HOM05D001772 ORTHO05D008903 9.2e-147 524.2 349 73.4
Migut.N01555 Erythranthe guttata HOM05D001772 ORTHO05D008903 7.8e-146 521.2 441 57.4
Solyc05g050320.4 Solanum lycopersicum HOM05D001772 ORTHO05D008903 1.3e-145 520.4 354 67.8
Peaxi162Scf00403g00519 Petunia axillaris HOM05D001772 ORTHO05D008903 1.9e-144 516.5 425 60.0
HanXRQChr11g0353031 Helianthus annuus HOM05D001772 ORTHO05D008903 7.3e-144 514.6 396 62.6
SGA_v2.0_scaffold11G05728 Striga asiatica HOM05D001772 ORTHO05D008903 7.3e-144 514.6 444 57.4
Ah.05g179760 Amaranthus hybridus HOM05D001772 ORTHO05D008903 5.2e-142 508.4 437 57.4
MELO3C006034.2 Cucumis melo HOM05D001772 ORTHO05D008903 5.2e-142 508.4 435 61.6
SalBow5G1378 Salvia bowleyana HOM05D001772 ORTHO05D008903 2.2e-140 503.1 463 54.9
Phvul.006G111900 Phaseolus vulgaris HOM05D001772 ORTHO05D008903 6.4e-140 501.5 321 74.5
Hund27212 Selenicereus undatus HOM05D001772 ORTHO05D008903 7.1e-139 498.0 432 57.6
Lj9A595T55 Lonicera japonica HOM05D001772 ORTHO05D008903 6.0e-138 495.0 321 71.7
Nitab4.5_0000258g0130 Nicotiana tabacum HOM05D001772 ORTHO05D008903 1.7e-137 493.4 433 58.2
DCAR_005380 Daucus carota HOM05D001772 ORTHO05D008903 3.0e-137 492.7 530 50.2
CDE10G0091 Ceratophyllum demersum HOM05D001772 ORTHO05D008903 6.6e-137 491.5 438 57.3
Zm00001eb358410 Zea mays HOM05D001772 ORTHO05D008903 1.1e-134 484.2 437 55.8
HPP92_005515 Vanilla planifolia HOM05D001772 ORTHO05D008903 1.0e-129 467.6 398 59.0
ECA240G4072 Erigeron canadensis HOM05D001772 ORTHO05D008903 1.3e-129 467.2 348 63.2
AL6G52340 Arabidopsis lyrata HOM05D001772 ORTHO05D008903 1.4e-107 394.0 253 70.4
Actinidia10113 Actinidia chinensis HOM05D001772 ORTHO05D008903 5.3e-102 375.6 282 65.6
SEGI_01392 Sequoiadendron giganteum HOM05D001772 ORTHO05D008903 2.5e-99 366.7 331 55.6
Pp3c22_2040 Physcomitrium patens HOM05D001772 ORTHO05D008903 2.7e-98 363.2 365 48.2
AagrBONN_evm.TU.Sc2ySwM_344.1652 Anthoceros agrestis HOM05D001772 ORTHO05D008903 7.9e-90 335.1 415 43.6
Mapoly0102s0038 Marchantia polymorpha HOM05D001772 ORTHO05D008903 8.2e-87 325.1 340 49.7
CiPaw.01G074400 Carya illinoinensis HOM05D001772 ORTHO05D008903 7.0e-86 322.0 232 71.6
Nitab4.5_0004506g0060 Nicotiana tabacum HOM05D001772 ORTHO05D008903 8.8e-81 305.1 434 41.9
SMO167G0031 Selaginella moellendorffii HOM05D001772 ORTHO05D008903 3.7e-79 299.7 328 48.2
SMO347G0199 Selaginella moellendorffii HOM05D001772 ORTHO05D008903 3.7e-79 299.7 329 48.3
CBR_g3968 Chara braunii HOM05D001772 ORTHO05D008903 1.2e-72 278.1 400 37.5
Cre03.g200650 Chlamydomonas reinhardtii HOM05D001772 ORTHO05D008903 4.9e-55 219.5 371 32.6
ATR0589G019 Amborella trichopoda HOM05D001772 ORTHO05D008903 2.3e-49 200.7 181 57.5
Os01g0619800 Oryza sativa ssp. japonica HOM05D001772 ORTHO05D008903 4.6e-45 186.4 135 63.0
Nitab4.5_0015177g0010 Nicotiana tabacum HOM05D001772 ORTHO05D000634 2.9e-39 167.2 118 69.5
Zm00001eb297790 Zea mays HOM05D001772 ORTHO05D023027 2.1e-34 151.0 134 59.0
Glyma.19G255000 Glycine max HOM05D001772 ORTHO05D008903 1.6e-18 98.2 100 53.0
Nitab4.5_0015177g0020 Nicotiana tabacum HOM05D001772 ORTHO05D008903 5.6e-11 73.2 50 60.0
Zm00001eb098470 Zea mays HOM05D001772 ORTHO05D008903 1.4e-06 58.5 58 53.4


User provided reference genes

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