Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10020152m.g Citrus clementina HOM05D006066 ORTHO05D007720 1.3e-257 892.5 445 100.0
Atru.chr11.2652 Acer truncatum HOM05D006066 ORTHO05D007720 2.6e-189 665.6 445 73.7
Potri.002G241366 Populus trichocarpa HOM05D006066 ORTHO05D007720 6.7e-169 597.8 441 66.0
Cpa.g.sc8.165 Carica papaya HOM05D006066 ORTHO05D007720 9.7e-168 594.0 445 64.5
Cfa008679 Carpinus fangiana HOM05D006066 ORTHO05D007720 1.3e-167 593.6 445 66.7
RcHm_v2.0_Chr6g0284991 Rosa chinensis HOM05D006066 ORTHO05D007720 2.7e-165 585.9 447 66.7
FvH4_2g19201 Fragaria vesca HOM05D006066 ORTHO05D007720 4.5e-165 585.1 445 67.0
Prupe.8G204000 Prunus persica HOM05D006066 ORTHO05D007720 4.2e-163 578.6 446 64.6
MD10G1165500 Malus domestica HOM05D006066 ORTHO05D007720 2.6e-160 569.3 445 63.1
CiPaw.01G110500 Carya illinoinensis HOM05D006066 ORTHO05D007720 9.8e-160 567.4 445 64.0
Hma1.2p1_1061F.1_g253440 Hydrangea macrophylla HOM05D006066 ORTHO05D007720 9.1e-158 560.8 443 60.9
Gohir.A11G137000 Gossypium hirsutum HOM05D006066 ORTHO05D007720 7.7e-157 557.8 444 62.8
Lj2C634T6 Lonicera japonica HOM05D006066 ORTHO05D007720 2.9e-156 555.8 442 62.2
QL06p028105 Quercus lobata HOM05D006066 ORTHO05D007720 4.2e-155 552.0 540 55.2
Gorai.007G153600 Gossypium raimondii HOM05D006066 ORTHO05D007720 7.2e-155 551.2 444 61.9
Manes.11G092400 Manihot esculenta HOM05D006066 ORTHO05D007720 1.2e-154 550.4 446 62.8
TWI36G0510 Tripterygium wilfordii HOM05D006066 ORTHO05D007720 7.5e-152 541.2 436 63.5
Dinv09237 Davidia involucrata HOM05D006066 ORTHO05D007720 7.0e-150 534.6 444 61.3
CSS0038727 Camellia sinensis var. sinensis HOM05D006066 ORTHO05D007720 7.8e-149 531.2 444 61.9
CSS0045030 Camellia sinensis var. sinensis HOM05D006066 ORTHO05D007720 7.8e-149 531.2 444 61.9
Lj2A644T10 Lonicera japonica HOM05D006066 ORTHO05D007720 2.8e-146 522.7 474 57.6
Rhsim01G0256300 Rhododendron simsii HOM05D006066 ORTHO05D007720 1.2e-144 517.3 444 57.4
TAR393G0002 Trochodendron aralioides HOM05D006066 ORTHO05D007720 6.4e-143 511.5 443 56.9
GSVIVG01028660001 Vitis vinifera HOM05D006066 ORTHO05D007720 8.6e-140 501.1 563 48.1
FAN24G1416 Fragaria x ananassa HOM05D006066 ORTHO05D000168 7.3e-139 498.0 437 60.9
FAN15G1679 Fragaria x ananassa HOM05D006066 ORTHO05D007720 9.5e-139 497.7 437 60.6
COL.COLO4_07189 Corchorus olitorius HOM05D006066 ORTHO05D007720 2.1e-138 496.5 410 59.8
vmacro14760 Vaccinium macrocarpon HOM05D006066 ORTHO05D007720 2.1e-138 496.5 457 56.5
Thhalv10020116m.g Eutrema salsugineum HOM05D006066 ORTHO05D007720 4.7e-138 495.4 455 53.6
VMungo0331G1521 Vigna mungo HOM05D006066 ORTHO05D007720 4.7e-138 495.4 447 55.3
Cc01_g17160 Coffea canephora HOM05D006066 ORTHO05D007720 8.0e-138 494.6 440 57.3
Sopen09g024200 Solanum pennellii HOM05D006066 ORTHO05D007720 1.8e-137 493.4 441 55.1
Solyc09g061380.3 Solanum lycopersicum HOM05D006066 ORTHO05D007720 6.8e-137 491.5 441 54.6
Lj3g0025737 Lotus japonicus HOM05D006066 ORTHO05D007720 1.7e-135 486.9 446 54.5
C05p60330 Brassica napus HOM05D006066 ORTHO05D007720 2.2e-135 486.5 453 53.6
Nn1g07817 Nelumbo nucifera HOM05D006066 ORTHO05D007720 6.4e-135 485.0 443 55.1
THA.LOC104818950 Tarenaya hassleriana HOM05D006066 ORTHO05D007720 8.3e-135 484.6 455 53.4
CAN.G154.6 Capsicum annuum HOM05D006066 ORTHO05D007720 4.1e-134 482.3 443 54.6
CARHR081650 Cardamine hirsuta HOM05D006066 ORTHO05D007720 2.1e-133 479.9 457 53.4
Eucgr.K03610 Eucalyptus grandis HOM05D006066 ORTHO05D007720 3.5e-133 479.2 440 55.5
ClCG07G001890 Citrullus lanatus HOM05D006066 ORTHO05D007720 1.7e-132 476.9 438 54.1
Hma1.2p1_1061F.1_g253450 Hydrangea macrophylla HOM05D006066 ORTHO05D007720 1.7e-132 476.9 388 60.3
Lalb_Chr07g0194051 Lupinus albus HOM05D006066 ORTHO05D007720 1.7e-132 476.9 446 54.5
Sp3g06000 Schrenkiella parvula HOM05D006066 ORTHO05D007720 1.7e-132 476.9 455 52.5
Nitab4.5_0000045g0020 Nicotiana tabacum HOM05D006066 ORTHO05D007720 1.9e-131 473.4 442 53.2
CsaV3_3G029870 Cucumis sativus L. HOM05D006066 ORTHO05D007720 2.5e-131 473.0 444 52.9
BolC5t34680H Brassica oleracea HOM05D006066 ORTHO05D007720 1.2e-130 470.7 454 52.6
Eucgr.L02049 Eucalyptus grandis HOM05D006066 ORTHO05D007720 2.8e-130 469.5 440 55.0
AL3G18290 Arabidopsis lyrata HOM05D006066 ORTHO05D007720 4.7e-130 468.8 453 51.2
AT3G07060 Arabidopsis thaliana HOM05D006066 ORTHO05D007720 4.7e-130 468.8 453 51.4
MELO3C026986.2 Cucumis melo HOM05D006066 ORTHO05D007720 4.7e-130 468.8 444 54.5
Ca_26562_v3 Cicer arietinum L. HOM05D006066 ORTHO05D007720 5.2e-129 465.3 446 52.5
BcaC05g29836 Brassica carinata HOM05D006066 ORTHO05D000168 6.8e-129 464.9 473 50.5
TPR.G5589 Trifolium pratense HOM05D006066 ORTHO05D007720 6.8e-129 464.9 446 51.3
PGR119G0212 Punica granatum HOM05D006066 ORTHO05D007720 2.6e-128 463.0 441 51.7
Aa31LG5G17620 Aethionema arabicum HOM05D006066 ORTHO05D007720 3.7e-127 459.1 504 47.0
Sed0017682 Sechium edule HOM05D006066 ORTHO05D007720 6.4e-127 458.4 441 52.6
Carub.0003s0657 Capsella rubella HOM05D006066 ORTHO05D007720 1.9e-126 456.8 454 50.0
Nitab4.5_0001872g0040 Nicotiana tabacum HOM05D006066 ORTHO05D007720 7.1e-126 454.9 439 52.4
ECA236G0120 Erigeron canadensis HOM05D006066 ORTHO05D007720 2.1e-125 453.4 442 52.3
BraA05t22840Z Brassica rapa HOM05D006066 ORTHO05D000168 6.0e-125 451.8 426 53.3
EL10Ac7g17774 Beta vulgaris HOM05D006066 ORTHO05D007720 1.7e-124 450.3 445 51.5
AUR62008867 Chenopodium quinoa HOM05D006066 ORTHO05D007720 5.1e-124 448.7 444 50.2
BcaC05g29758 Brassica carinata HOM05D006066 ORTHO05D007720 6.6e-124 448.4 426 53.1
HanXRQChr04g0110731 Helianthus annuus HOM05D006066 ORTHO05D007720 1.6e-122 443.7 442 51.4
Medtr4g022660 Medicago truncatula HOM05D006066 ORTHO05D007720 2.4e-121 439.9 445 49.9
Aqoxy2G03103 Aquilegia oxysepala HOM05D006066 ORTHO05D007720 3.1e-121 439.5 440 50.5
Phvul.010G014600 Phaseolus vulgaris HOM05D006066 ORTHO05D007720 8.9e-121 438.0 418 52.9
Medtr7g026915 Medicago truncatula HOM05D006066 ORTHO05D007720 7.6e-120 434.9 445 49.4
Lsat_1_v5_gn_8_90041 Lactuca sativa HOM05D006066 ORTHO05D007720 1.3e-119 434.1 442 50.9
A05p41140 Brassica napus HOM05D006066 ORTHO05D007720 2.2e-119 433.3 464 48.7
Migut.D00528 Erythranthe guttata HOM05D006066 ORTHO05D007720 8.4e-119 431.4 442 48.4
Duzib133G0184 Durio zibethinus HOM05D006066 ORTHO05D007720 1.1e-118 431.0 344 61.3
Haze_11697 Corylus avellana HOM05D006066 ORTHO05D007720 4.2e-118 429.1 361 60.4
Psat2g159600 Pisum sativum HOM05D006066 ORTHO05D007720 3.5e-117 426.0 446 49.3
AUR62031844 Chenopodium quinoa HOM05D006066 ORTHO05D007720 3.0e-116 422.9 419 50.1
Hund18348 Selenicereus undatus HOM05D006066 ORTHO05D007720 3.9e-116 422.5 458 47.2
Actinidia23727 Actinidia chinensis HOM05D006066 ORTHO05D007720 1.5e-115 420.6 445 51.2
SGA_v2.0_scaffold8G04647 Striga asiatica HOM05D006066 ORTHO05D007720 3.3e-115 419.5 465 46.2
PSO782G0283 Papaver somniferum HOM05D006066 ORTHO05D007720 5.6e-115 418.7 449 48.8
PSO170G1150 Papaver somniferum HOM05D006066 ORTHO05D007720 1.3e-114 417.5 449 48.8
Ah.08g213920 Amaranthus hybridus HOM05D006066 ORTHO05D007720 3.6e-114 416.0 444 47.7
Dinv01555 Davidia involucrata HOM05D006066 ORTHO05D007720 1.2e-112 411.0 347 61.4
SalBow6G7080 Salvia bowleyana HOM05D006066 ORTHO05D007720 3.8e-111 406.0 458 46.1
SGA_v2.0_scaffold586G53055 Striga asiatica HOM05D006066 ORTHO05D007720 2.4e-110 403.3 453 45.7
Thecc.01G227100 Theobroma cacao HOM05D006066 ORTHO05D007720 2.7e-109 399.8 293 64.5
Peaxi162Scf00107g01622 Petunia axillaris HOM05D006066 ORTHO05D007720 1.6e-106 390.6 459 47.1
FAN27G1043 Fragaria x ananassa HOM05D006066 ORTHO05D007720 1.2e-101 374.4 332 61.7
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 8.2e-90 335.1 446 40.4
Zm00001eb173150 Zea mays HOM05D006066 ORTHO05D007720 6.7e-84 315.5 450 37.8
Gohir.D11G143350 Gossypium hirsutum HOM05D006066 ORTHO05D007720 1.9e-83 313.9 240 62.5
MD05G1176900 Malus domestica HOM05D006066 ORTHO05D007720 1.9e-83 313.9 302 53.6
arahy.Tifrunner.gnm1.ann1.50JBL9 Arachis hypogaea HOM05D006066 ORTHO05D007720 9.7e-83 311.6 443 39.1
DCAR_018556 Daucus carota HOM05D006066 ORTHO05D007720 3.6e-77 293.1 441 40.1
arahy.Tifrunner.gnm1.ann1.9R7KTD Arachis hypogaea HOM05D006066 ORTHO05D007720 2.3e-76 290.4 441 38.1
PSO674G0067 Papaver somniferum HOM05D006066 ORTHO05D007720 1.5e-75 287.7 331 46.5
unitig_22.g5305 Utricularia gibba HOM05D006066 ORTHO05D007720 1.5e-75 287.7 442 38.5
Sc24g0003620 Simmondsia chinensis HOM05D006066 ORTHO05D007720 4.1e-73 279.6 238 54.2
Glyma.19G124200 Glycine max HOM05D006066 ORTHO05D007720 7.2e-70 268.9 242 52.5
SHI34881 Sapria himalayana HOM05D006066 ORTHO05D007720 2.0e-67 260.8 361 41.3
CDE06G2585 Ceratophyllum demersum HOM05D006066 ORTHO05D007720 5.5e-62 242.7 412 36.9
SEGI_19430 Sequoiadendron giganteum HOM05D006066 ORTHO05D007720 1.5e-59 234.6 439 33.7
MSTRG.21426 Avicennia marina HOM05D006066 ORTHO05D007720 1.8e-49 201.1 213 48.4
Aqoxy5G00070 Aquilegia oxysepala HOM05D006066 ORTHO05D007720 3.0e-36 157.1 338 32.2
MSTRG.21425 Avicennia marina HOM05D006066 ORTHO05D007720 8.9e-36 155.6 121 57.9
Pp3c3_5060 Physcomitrium patens HOM05D006066 ORTHO05D007720 6.6e-31 139.4 366 29.5
PGSC0003DMG400009670 Solanum tuberosum HOM05D006066 ORTHO05D007720 6.4e-26 122.9 114 53.5
Mapoly0057s0011 Marchantia polymorpha HOM05D006066 ORTHO05D007720 1.3e-23 115.2 373 27.1
vmacro14757 Vaccinium macrocarpon HOM05D006066 ORTHO05D007720 4.1e-17 93.6 70 64.3
Lsat_1_v5_gn_8_160280 Lactuca sativa HOM05D001279 ORTHO05D001636 3.3e-14 84.0 128 37.5
Os08g0135300 Oryza sativa ssp. japonica HOM05D006066 ORTHO05D007720 6.2e-13 79.7 146 32.2
Dinv01554 Davidia involucrata HOM05D006066 ORTHO05D007720 6.8e-12 76.3 41 82.9
Lsat_1_v5_gn_2_108800 Lactuca sativa HOM05D006934 ORTHO05D003550 1.3e-10 72.0 59 59.3
Lsat_1_v5_gn_1_123760 Lactuca sativa HOM05D006066 ORTHO05D003550 1.9e-09 68.2 50 66.0
Lsat_1_v5_gn_4_37140 Lactuca sativa HOM05D001279 ORTHO05D001636 1.0e-07 62.4 69 50.7
Lsat_1_v5_gn_5_64901 Lactuca sativa HOM05D001279 ORTHO05D001636 1.0e-07 62.4 68 50.0


User provided reference genes

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