Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10020134m.g Citrus clementina HOM05D006262 ORTHO05D007266 2.4e-238 828.6 449 100.0
Atru.chr3.1601 Acer truncatum HOM05D006262 ORTHO05D007266 5.1e-148 528.5 458 67.9
Atru.chr3.1609 Acer truncatum HOM05D006262 ORTHO05D007266 5.1e-148 528.5 458 67.9
Manes.04G048800 Manihot esculenta HOM05D006262 ORTHO05D007266 3.4e-128 462.6 438 60.5
Potri.007G124600 Populus trichocarpa HOM05D006262 ORTHO05D007266 6.3e-114 415.2 446 57.4
Thecc.05G002700 Theobroma cacao HOM05D006262 ORTHO05D007266 4.2e-110 402.5 423 57.0
TWI63G1082 Tripterygium wilfordii HOM05D006262 ORTHO05D007266 2.1e-109 400.2 418 57.2
Cfa015775 Carpinus fangiana HOM05D006262 ORTHO05D007266 6.7e-108 395.2 364 61.8
AT2G43235 Arabidopsis thaliana HOM05D006262 ORTHO05D007266 4.8e-106 389.0 434 53.2
Dinv22693 Davidia involucrata HOM05D006262 ORTHO05D007266 6.3e-106 388.7 409 54.3
AL4G41890 Arabidopsis lyrata HOM05D006262 ORTHO05D007266 1.4e-105 387.5 434 55.5
Thhalv10001453m.g Eutrema salsugineum HOM05D006262 ORTHO05D007266 3.1e-105 386.3 432 53.5
Sp4g25360 Schrenkiella parvula HOM05D006262 ORTHO05D007266 5.3e-105 385.6 433 52.9
CARHR138310 Cardamine hirsuta HOM05D006262 ORTHO05D007266 1.2e-104 384.4 429 53.8
PGR142G3389 Punica granatum HOM05D006262 ORTHO05D007266 4.5e-104 382.5 423 53.2
CSS0049911 Camellia sinensis var. sinensis HOM05D006262 ORTHO05D007266 7.7e-104 381.7 396 55.3
RcHm_v2.0_Chr4g0407651 Rosa chinensis HOM05D006262 ORTHO05D007266 1.3e-103 380.9 406 55.4
BraA03t11623Z Brassica rapa HOM05D006262 ORTHO05D007266 2.2e-103 380.2 428 53.0
A03p24130 Brassica napus HOM05D006262 ORTHO05D007266 2.9e-103 379.8 428 53.0
COL.COLO4_14416 Corchorus olitorius HOM05D006262 ORTHO05D007266 3.8e-103 379.4 425 54.4
C03p28720 Brassica napus HOM05D006262 ORTHO05D007266 6.5e-103 378.6 428 53.3
Carub.0004s2570 Capsella rubella HOM05D006262 ORTHO05D007266 6.5e-103 378.6 429 55.2
TAR362G0090 Trochodendron aralioides HOM05D006262 ORTHO05D007266 8.5e-103 378.3 373 57.9
BcaB01g03403 Brassica carinata HOM05D006262 ORTHO05D007266 1.4e-102 377.5 424 53.8
BcaC01g05249 Brassica carinata HOM05D006262 ORTHO05D007266 1.9e-102 377.1 428 53.3
Duzib093G0344 Durio zibethinus HOM05D006262 ORTHO05D007266 1.9e-102 377.1 437 54.5
BolC3t15234H Brassica oleracea HOM05D006262 ORTHO05D007266 4.2e-102 375.9 428 53.0
FvH4_4g11340 Fragaria vesca HOM05D006262 ORTHO05D007266 5.5e-102 375.6 401 54.6
Hma1.2p1_0597F.1_g186430 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 9.4e-102 374.8 445 52.4
Sabra07G0100700 Salix brachista HOM05D006262 ORTHO05D002297 2.1e-101 373.6 436 54.1
Prupe.1G187900 Prunus persica HOM05D006262 ORTHO05D007266 7.9e-101 371.7 388 55.9
CANSAT78G0581 Cannabis sativa HOM05D006262 ORTHO05D007266 1.1e-99 367.9 358 57.8
Gohir.D04G136100 Gossypium hirsutum HOM05D006262 ORTHO05D007266 7.4e-99 365.2 429 53.4
QL10p047365 Quercus lobata HOM05D006262 ORTHO05D007266 1.3e-98 364.4 435 53.6
MD04G1038000 Malus domestica HOM05D006262 ORTHO05D007266 2.2e-98 363.6 392 55.9
Aa31LG1G25040 Aethionema arabicum HOM05D006262 ORTHO05D007266 4.8e-98 362.5 445 50.6
Rhsim09G0030700 Rhododendron simsii HOM05D006262 ORTHO05D007266 6.3e-98 362.1 396 54.8
DCAR_023918 Daucus carota HOM05D006262 ORTHO05D007266 1.4e-97 360.9 390 54.4
Gohir.A04G096300 Gossypium hirsutum HOM05D006262 ORTHO05D007266 5.3e-97 359.0 426 53.3
Gorai.012G119900 Gossypium raimondii HOM05D006262 ORTHO05D007266 1.2e-96 357.8 429 52.9
vmacro00601 Vaccinium macrocarpon HOM05D006262 ORTHO05D007266 2.9e-95 353.2 426 50.5
HanXRQChr15g0494811 Helianthus annuus HOM05D006262 ORTHO05D007266 1.9e-94 350.5 417 49.6
Cc03_g13170 Coffea canephora HOM05D006262 ORTHO05D007266 3.2e-94 349.7 370 54.3
Eucgr.A00253 Eucalyptus grandis HOM05D006262 ORTHO05D007266 1.2e-93 347.8 354 57.3
Glyma.20G245900 Glycine max HOM05D006262 ORTHO05D007266 1.8e-92 344.0 416 50.7
MBI08_g33651_MAGBIO Magnolia biondii HOM05D006262 ORTHO05D007266 3.7e-90 336.3 399 49.9
Phvul.007G004000 Phaseolus vulgaris HOM05D006262 ORTHO05D007266 3.7e-90 336.3 405 50.6
Lalb_Chr02g0144321 Lupinus albus HOM05D006262 ORTHO05D007266 1.4e-89 334.3 427 48.0
MELO3C017699.2 Cucumis melo HOM05D006262 ORTHO05D007266 4.1e-89 332.8 440 47.0
CsaV3_4G003530 Cucumis sativus L. HOM05D006262 ORTHO05D007266 5.3e-89 332.4 440 46.4
Aqoxy2G04115 Aquilegia oxysepala HOM05D006262 ORTHO05D007266 7.0e-89 332.0 406 48.3
Lj5g0018354 Lotus japonicus HOM05D006262 ORTHO05D007266 9.1e-89 331.6 392 50.5
Sed0004128 Sechium edule HOM05D006262 ORTHO05D007266 1.6e-88 330.9 367 52.3
ClCG07G015820 Citrullus lanatus HOM05D006262 ORTHO05D007266 4.5e-88 329.3 400 49.0
ECA238G4140 Erigeron canadensis HOM05D000005 ORTHO05D000012 5.9e-88 328.9 396 51.3
arahy.Tifrunner.gnm1.ann1.6Y9ITK Arachis hypogaea HOM05D006262 ORTHO05D007266 1.0e-87 328.2 354 53.7
Lsat_1_v5_gn_2_51881 Lactuca sativa HOM05D006262 ORTHO05D007266 6.5e-87 325.5 386 51.0
arahy.Tifrunner.gnm1.ann1.BL35NN Arachis hypogaea HOM05D006262 ORTHO05D007266 8.5e-87 325.1 350 54.0
PGSC0003DMG400021613 Solanum tuberosum HOM05D006262 ORTHO05D007266 1.1e-86 324.7 361 52.4
Ca_29592_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 5.5e-86 322.4 427 47.5
Nn1g09825 Nelumbo nucifera HOM05D006262 ORTHO05D007266 6.1e-85 318.9 380 48.2
VMungo0720G2273 Vigna mungo HOM05D006262 ORTHO05D007266 6.1e-85 318.9 383 49.9
Lj3A232G38 Lonicera japonica HOM05D006262 ORTHO05D007266 1.0e-84 318.2 401 49.9
Solyc09g098530.4 Solanum lycopersicum HOM05D006262 ORTHO05D007266 1.0e-84 318.2 410 48.0
PSO675G4698 Papaver somniferum HOM05D006262 ORTHO05D007266 4.0e-84 316.2 402 46.0
Sopen09g036450 Solanum pennellii HOM05D006262 ORTHO05D007266 4.0e-84 316.2 416 48.3
PSO017G4626 Papaver somniferum HOM05D006262 ORTHO05D007266 1.5e-83 314.3 394 47.5
Haze_00720 Corylus avellana HOM05D006262 ORTHO05D007266 2.6e-83 313.5 488 43.6
Sc13g0007690 Simmondsia chinensis HOM05D006262 ORTHO05D007266 2.6e-83 313.5 415 47.7
ATR0743G268 Amborella trichopoda HOM05D006262 ORTHO05D007266 4.1e-81 306.2 379 47.8
GSVIVG01013579001 Vitis vinifera HOM05D006262 ORTHO05D007266 4.1e-81 306.2 273 62.6
EL10Ac3g06302 Beta vulgaris HOM05D006262 ORTHO05D007266 2.0e-80 303.9 417 46.3
Medtr1g116540 Medicago truncatula HOM05D006262 ORTHO05D007266 2.7e-80 303.5 406 46.3
TPR.G10421 Trifolium pratense HOM05D006262 ORTHO05D007266 3.5e-80 303.1 416 46.4
Ah.07g204100 Amaranthus hybridus HOM05D006262 ORTHO05D007266 5.0e-79 299.3 383 47.3
Migut.N03113 Erythranthe guttata HOM05D006262 ORTHO05D007266 1.9e-78 297.4 390 44.6
MSTRG.24585 Avicennia marina HOM05D006262 ORTHO05D007266 6.8e-76 288.9 389 44.7
HPP92_024424 Vanilla planifolia HOM05D006262 ORTHO05D007266 9.8e-75 285.0 394 43.1
Hund22599 Selenicereus undatus HOM05D006262 ORTHO05D007266 1.7e-74 284.3 412 46.4
CDE09G0849 Ceratophyllum demersum HOM05D006262 ORTHO05D007266 2.9e-71 273.5 308 50.6
Psat6g241480 Pisum sativum HOM05D006262 ORTHO05D007266 3.8e-71 273.1 376 45.2
SalBow6G1208 Salvia bowleyana HOM05D006262 ORTHO05D007266 8.6e-71 271.9 411 42.1
Os05g0299200 Oryza sativa ssp. japonica HOM05D006262 ORTHO05D007266 3.5e-64 250.0 376 42.0
Zm00001eb350760 Zea mays HOM05D006262 ORTHO05D007266 3.5e-64 250.0 363 42.4
Ca_11400_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 1.9e-62 244.2 427 41.5
unitig_27.g25149 Utricularia gibba HOM05D006262 ORTHO05D007266 2.5e-62 243.8 360 39.4
Ca_11403_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 5.6e-62 242.7 428 41.4
Oeu029569.3 Olea europaea HOM05D006262 ORTHO05D007266 7.3e-62 242.3 489 34.2
SEGI_17174 Sequoiadendron giganteum HOM05D006262 ORTHO05D007266 2.0e-59 234.2 361 41.8
CiPaw.01G102600 Carya illinoinensis HOM05D006262 ORTHO05D007266 3.7e-58 229.9 250 55.2
AUR62002605 Chenopodium quinoa HOM05D006262 ORTHO05D007266 1.2e-56 224.9 388 39.7
AUR62030023 Chenopodium quinoa HOM05D006262 ORTHO05D007266 4.6e-56 223.0 388 39.4
AagrBONN_evm.TU.Sc2ySwM_344.5117 Anthoceros agrestis HOM05D006262 ORTHO05D007266 7.8e-56 222.2 382 39.8
Nitab4.5_0002908g0080 Nicotiana tabacum HOM05D006262 ORTHO05D007266 1.6e-53 214.5 180 64.4
Peaxi162Scf00286g00119 Petunia axillaris HOM05D006262 ORTHO05D007266 8.0e-53 212.2 166 66.9
Nitab4.5_0001049g0110 Nicotiana tabacum HOM05D006262 ORTHO05D007266 8.9e-52 208.8 161 67.1
SMO351G0235 Selaginella moellendorffii HOM05D006262 ORTHO05D007266 5.6e-46 189.5 285 42.1
Hma1.2p1_0597F.1_g186420 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 1.6e-45 188.0 139 73.4
Mapoly0004s0159 Marchantia polymorpha HOM05D006262 ORTHO05D007266 2.1e-45 187.6 357 34.5
SGA_v2.0_scaffold31G12573 Striga asiatica HOM05D006262 ORTHO05D007266 2.7e-40 170.6 389 32.4
Pp3c12_3930 Physcomitrium patens HOM05D006262 ORTHO05D007266 1.5e-38 164.9 405 32.6
Cpa.g.sc71.28 Carica papaya HOM05D006262 ORTHO05D007266 3.4e-35 153.7 236 43.2
Pp3c9_3680 Physcomitrium patens HOM05D006262 ORTHO05D007266 1.1e-30 138.7 367 30.2
Nitab4.5_0002908g0070 Nicotiana tabacum HOM05D006262 ORTHO05D007266 2.6e-27 127.5 196 43.9
Cpa.g.sc71.30 Carica papaya HOM05D006262 ORTHO05D007266 3.8e-26 123.6 86 76.7
Nitab4.5_0001049g0100 Nicotiana tabacum HOM05D006262 ORTHO05D007266 4.9e-26 123.2 220 41.4
Hma1.2p1_0597F.1_g186440 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 6.4e-26 122.9 247 38.5
FAN17G0796 Fragaria x ananassa HOM05D006262 ORTHO05D007266 4.8e-21 106.7 82 63.4
Peaxi162Scf00286g10017 Petunia axillaris HOM05D006262 ORTHO05D007266 1.3e-18 98.6 227 33.0
QL09p046233 Quercus lobata HOM05D006262 ORTHO05D007266 2.9e-18 97.4 83 66.3
CAN.G688.4 Capsicum annuum HOM05D006262 ORTHO05D007266 4.9e-18 96.7 75 64.0
PRCOL_00005486 Prasinoderma coloniale HOM05D006262 ORTHO05D007266 8.4e-18 95.9 277 28.9
MCO03G554 Micromonas commoda HOM05D006262 ORTHO05D007266 1.4e-17 95.1 291 29.2
CAN.G51.2 Capsicum annuum HOM05D006262 ORTHO05D007266 1.2e-11 75.5 75 54.7
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.5e-11 75.1 72 58.3
GSVIVG01020265001 Vitis vinifera HOM05D006262 ORTHO05D007266 1.5e-11 75.1 108 44.4
FAN07G2249 Fragaria x ananassa HOM05D006262 ORTHO05D007266 1.9e-09 68.2 47 70.2
Glyma.10G295900 Glycine max HOM05D006262 ORTHO05D007266 3.2e-09 67.4 130 43.1
FvH4_c17g00080 Fragaria vesca HOM05D006262 ORTHO05D007266 9.3e-09 65.9 50 64.0
FAN07G1916 Fragaria x ananassa HOM05D006262 ORTHO05D007266 9.3e-09 65.9 52 63.5
BcaC07g41819 Brassica carinata HOM05D003128 ORTHO05D024111 6.7e-07 59.7 70 54.3
BraA10t42873Z Brassica rapa HOM05D006262 ORTHO05D007266 7.4e-06 56.2 211 29.9


User provided reference genes

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