Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 1.4e-257 892.5 473 100.0
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 7.6e-211 737.3 474 82.9
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 4.5e-195 684.9 472 74.8
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 1.8e-191 672.9 474 72.8
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 2.3e-191 672.5 475 74.3
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 4.8e-189 664.8 473 71.9
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 4.8e-189 664.8 473 71.9
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 8.2e-189 664.1 475 72.0
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 1.1e-188 663.7 471 72.4
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 3.1e-188 662.1 474 73.8
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 6.9e-188 661.0 481 72.1
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.2e-187 660.2 473 71.9
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 7.6e-187 657.5 474 71.1
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 1.1e-185 653.7 475 72.4
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 1.1e-185 653.7 475 71.2
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 7.1e-185 651.0 467 72.6
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 1.0e-183 647.1 473 70.8
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 8.7e-183 644.0 474 70.0
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.1e-182 643.7 475 70.9
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 7.4e-182 641.0 475 70.7
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 1.6e-181 639.8 321 99.4
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 3.7e-181 638.6 475 70.7
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 3.1e-180 635.6 477 70.0
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 4.1e-180 635.2 471 70.5
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 4.5e-179 631.7 475 70.3
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 5.9e-179 631.3 482 68.9
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 7.6e-179 630.9 456 71.9
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 1.0e-178 630.6 475 70.3
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 3.8e-178 628.6 471 70.7
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 1.1e-177 627.1 475 69.3
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 1.4e-177 626.7 473 69.1
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 1.9e-177 626.3 474 69.2
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 1.2e-176 623.6 473 68.5
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 1.0e-175 620.5 487 69.8
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 1.8e-175 619.8 491 68.6
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 3.9e-175 618.6 468 69.9
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 8.7e-175 617.5 471 69.4
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 1.9e-174 616.3 471 68.8
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 2.2e-173 612.8 471 69.0
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 3.7e-173 612.1 472 69.1
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 8.2e-173 610.9 476 68.1
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 1.1e-172 610.5 471 68.4
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 1.4e-172 610.1 476 67.6
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 9.1e-172 607.4 468 68.2
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 2.0e-171 606.3 469 67.6
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 3.8e-170 602.1 476 66.8
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 8.5e-170 600.9 508 63.8
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 1.1e-169 600.5 477 67.1
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 1.9e-169 599.7 477 66.9
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 2.5e-169 599.4 469 67.2
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 2.5e-169 599.4 468 67.1
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 5.5e-169 598.2 473 67.0
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 5.5e-169 598.2 465 67.7
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 9.4e-169 597.4 474 66.7
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 1.2e-168 597.0 477 66.2
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 1.6e-168 596.7 474 66.0
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 4.7e-168 595.1 474 66.0
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 1.0e-167 594.0 478 66.7
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 1.4e-167 593.6 484 66.7
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 2.3e-167 592.8 465 68.2
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 3.0e-167 592.4 474 64.3
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 6.7e-167 591.3 468 66.7
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 1.1e-166 590.5 475 66.9
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 1.5e-166 590.1 504 63.7
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 1.5e-166 590.1 469 67.8
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 2.6e-166 589.3 446 70.2
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 3.3e-166 589.0 470 66.4
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 7.4e-166 587.8 472 66.7
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 9.7e-166 587.4 466 66.5
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 1.3e-165 587.0 455 67.5
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 3.7e-165 585.5 468 66.2
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 3.7e-165 585.5 468 66.2
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 3.7e-165 585.5 466 67.4
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 4.8e-165 585.1 468 66.0
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 1.1e-164 583.9 470 66.0
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 1.8e-164 583.2 477 64.8
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 4.1e-164 582.0 468 65.6
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 9.1e-164 580.9 476 64.3
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 1.2e-163 580.5 446 68.2
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 2.0e-163 579.7 472 66.1
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 2.6e-163 579.3 472 66.7
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 3.4e-163 578.9 474 64.8
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 4.5e-163 578.6 552 57.6
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 1.0e-162 577.4 469 65.7
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 5.0e-162 575.1 466 66.1
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 1.1e-161 573.9 466 65.7
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 1.2e-160 570.5 472 65.0
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 3.6e-160 568.9 468 65.0
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 6.1e-160 568.2 470 65.1
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 1.4e-159 567.0 468 65.6
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 1.8e-159 566.6 468 66.9
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 3.0e-159 565.8 417 67.4
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 5.2e-159 565.1 455 67.3
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 6.7e-159 564.7 466 65.9
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 6.7e-159 564.7 468 66.0
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 1.1e-158 563.9 455 67.3
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 2.0e-158 563.1 469 65.2
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 2.0e-158 563.1 472 64.0
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 4.4e-158 562.0 472 64.2
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 9.7e-158 560.8 466 63.3
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 9.7e-158 560.8 472 64.0
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 6.3e-157 558.1 465 62.6
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 1.8e-156 556.6 469 64.6
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 1.2e-155 553.9 468 64.3
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 1.2e-155 553.9 470 64.5
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.6e-155 553.5 472 64.0
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 2.0e-155 553.1 468 65.0
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 2.0e-155 553.1 472 63.8
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 4.5e-155 552.0 438 68.9
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 1.0e-154 550.8 467 64.2
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 1.5e-153 547.0 474 63.1
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 2.7e-152 542.7 466 63.5
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 8.0e-152 541.2 465 61.7
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 8.8e-151 537.7 516 58.1
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 2.8e-149 532.7 425 67.3
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 1.2e-147 527.3 469 63.1
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 4.2e-145 518.8 470 63.2
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 7.2e-145 518.1 470 63.0
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 6.1e-144 515.0 449 62.4
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 1.7e-141 506.9 423 64.5
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 9.1e-140 501.1 479 58.0
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 1.3e-138 497.3 458 60.9
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.7e-138 496.9 453 61.8
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 5.2e-135 485.3 458 58.1
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 4.1e-132 475.7 446 56.3
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 9.5e-129 464.5 434 59.9
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 4.7e-128 462.2 382 64.1
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 6.1e-128 461.8 468 54.5
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 5.2e-127 458.8 476 55.9
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 1.8e-124 450.3 529 52.2
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 9.8e-118 427.9 308 74.0
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 2.4e-116 423.3 494 49.4
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 1.3e-114 417.5 342 64.9
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 7.3e-113 411.8 449 50.1
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 4.1e-108 396.0 465 48.6
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 3.0e-106 389.8 474 48.1
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 1.5e-102 377.5 480 49.4
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.2e-94 351.3 269 68.8
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 5.3e-87 325.9 321 56.7
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 3.5e-83 313.2 337 54.3
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 3.1e-79 300.1 289 57.4
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 7.1e-76 288.9 480 42.3
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 2.4e-71 273.9 317 50.2
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 9.0e-71 271.9 212 66.5
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 1.1e-68 265.0 261 57.5
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 4.2e-68 263.1 232 61.2
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 1.2e-67 261.5 184 73.4
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 1.8e-66 257.7 234 62.0
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 5.1e-66 256.1 212 62.3
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 1.5e-65 254.6 229 59.0
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 5.7e-65 252.7 512 37.9
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 4.5e-62 243.0 158 76.6
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 1.1e-60 238.4 212 59.9
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 1.1e-49 201.8 213 49.8
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 2.8e-48 197.2 121 77.7
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 2.2e-45 187.6 189 50.8
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 9.7e-41 172.2 375 35.2
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 9.7e-41 172.2 286 42.3
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 2.2e-40 171.0 148 62.8
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 8.2e-40 169.1 169 55.0
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 2.0e-38 164.5 148 58.1
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 6.5e-37 159.5 318 33.0
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 3.7e-32 143.7 314 33.4
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 1.5e-28 131.7 79 75.9
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 3.6e-27 127.1 154 51.3
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 4.7e-27 126.7 79 84.8
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 1.0e-26 125.6 76 76.3
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 5.2e-26 123.2 174 44.3
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 9.8e-25 119.0 121 57.9
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 1.6e-22 111.7 126 51.6
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 1.5e-20 105.1 122 55.7
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 2.7e-14 84.3 63 74.6
Dinv30975 Davidia involucrata HOM05D000190 ORTHO05D000113 2.1e-11 74.7 63 55.6
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 8.0e-11 72.8 51 70.6
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 7.5e-09 66.2 42 73.8
arahy.Tifrunner.gnm1.ann1.EDPG13 Arachis hypogaea HOM05D003961 ORTHO05D038865 4.9e-08 63.5 113 38.9
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 8.3e-08 62.8 66 50.0
Lsat_1_v5_gn_7_81560 Lactuca sativa HOM05D000267 ORTHO05D029881 1.6e-06 58.5 81 46.9
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 1.6e-06 58.5 28 96.4
SHI44505 Sapria himalayana HOM05D003886 ORTHO05D009901 2.0e-06 58.2 36 69.4


User provided reference genes

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