Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 1.0e-279 966.1 480 100.0
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 8.7e-231 803.5 460 84.3
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 1.2e-227 793.1 469 81.4
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 2.2e-226 788.9 465 82.6
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 7.9e-224 780.4 462 81.8
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 1.3e-221 773.1 456 81.8
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 3.7e-221 771.5 463 81.4
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 8.2e-221 770.4 461 80.9
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 5.3e-220 767.7 456 81.4
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 2.0e-219 765.8 452 80.8
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 4.5e-219 764.6 476 78.4
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 7.7e-219 763.8 456 80.7
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 8.5e-218 760.4 458 80.1
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 5.5e-217 757.7 474 78.1
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 2.6e-214 748.8 458 79.7
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 3.3e-214 748.4 462 78.8
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 9.7e-214 746.9 457 79.2
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 4.8e-213 744.6 460 78.9
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 1.1e-212 743.4 461 79.0
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 1.8e-212 742.7 445 80.4
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 7.0e-212 740.7 467 77.1
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 1.5e-211 739.6 460 78.7
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 3.5e-211 738.4 479 76.2
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.7e-210 736.1 457 79.0
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 1.7e-210 736.1 449 79.3
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 3.8e-210 734.9 453 77.3
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 5.0e-210 734.6 460 78.5
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 6.5e-210 734.2 460 78.3
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 1.4e-209 733.0 459 77.8
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 1.9e-209 732.6 453 76.4
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 2.5e-209 732.3 443 79.0
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 2.5e-209 732.3 476 75.8
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 2.5e-209 732.3 476 75.8
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 9.4e-209 730.3 474 74.5
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 2.1e-208 729.2 451 79.4
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 3.6e-208 728.4 488 74.2
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 8.0e-208 727.2 450 77.1
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 8.0e-208 727.2 464 75.0
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 1.0e-207 726.9 465 77.4
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 3.0e-207 725.3 450 77.8
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 5.2e-207 724.5 452 77.4
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 5.2e-207 724.5 459 76.7
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 8.8e-207 723.8 478 74.5
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 8.8e-207 723.8 460 76.3
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 2.0e-206 722.6 450 76.7
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 3.3e-206 721.8 443 77.9
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 3.3e-206 721.8 460 75.9
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 5.7e-206 721.1 460 77.2
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 2.2e-205 719.2 453 77.5
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 2.8e-205 718.8 429 79.5
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 4.8e-205 718.0 428 79.7
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 4.8e-205 718.0 480 74.8
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 4.8e-205 718.0 443 77.9
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 1.8e-204 716.1 445 78.2
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 5.3e-204 714.5 446 76.9
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 9.1e-204 713.8 434 78.6
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 1.2e-203 713.4 460 76.3
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.6e-203 713.0 460 74.6
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 2.0e-203 712.6 447 77.2
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 2.9e-202 708.8 452 75.4
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.9e-202 708.8 452 75.4
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.9e-202 708.8 452 75.4
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 5.0e-202 708.0 462 73.8
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 1.1e-201 706.8 453 75.7
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 2.5e-201 705.7 447 77.4
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 2.5e-201 705.7 437 77.3
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 3.2e-201 705.3 452 75.0
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 5.5e-201 704.5 428 78.5
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 7.2e-201 704.1 466 74.5
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.6e-200 703.0 452 74.6
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.6e-200 703.0 452 74.6
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 1.0e-199 700.3 443 75.6
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 1.0e-199 700.3 472 73.3
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 1.4e-199 699.9 446 74.4
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.8e-199 699.5 425 77.9
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 1.8e-199 699.5 444 75.5
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 4.0e-199 698.4 452 75.0
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 2.6e-198 695.7 462 73.2
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 3.4e-198 695.3 452 74.3
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 3.4e-198 695.3 428 77.8
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 4.4e-198 694.9 435 77.7
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 9.7e-198 693.7 431 76.6
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 1.3e-197 693.3 454 74.7
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 2.2e-197 692.6 477 72.3
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 4.8e-197 691.4 451 73.8
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 8.3e-197 690.6 444 75.2
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 1.4e-196 689.9 451 74.3
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 1.8e-196 689.5 471 72.4
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 2.4e-196 689.1 477 72.3
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 4.1e-196 688.3 439 75.2
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 9.1e-196 687.2 388 84.3
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 9.1e-196 687.2 452 75.0
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 2.0e-195 686.0 433 75.5
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 2.7e-195 685.6 435 75.6
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 4.5e-195 684.9 439 75.6
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 1.0e-194 683.7 430 76.3
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 6.5e-194 681.0 440 73.9
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.5e-193 679.9 407 80.1
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 1.9e-193 679.5 430 75.8
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 2.5e-193 679.1 430 76.7
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 2.5e-193 679.1 425 76.7
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 2.5e-193 679.1 425 76.7
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 4.2e-193 678.3 466 71.5
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 7.2e-193 677.6 482 71.8
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 9.4e-193 677.2 444 74.5
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 1.2e-192 676.8 467 71.3
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 4.7e-192 674.9 463 72.1
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 1.0e-191 673.7 451 72.5
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 1.8e-191 672.9 440 73.0
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 3.0e-191 672.2 431 74.5
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 5.2e-191 671.4 445 71.9
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 8.8e-191 670.6 429 73.9
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 8.8e-191 670.6 451 72.3
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 1.5e-190 669.8 440 72.7
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 1.5e-190 669.8 431 74.2
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 2.0e-190 669.5 451 72.3
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 2.0e-190 669.5 449 73.1
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 9.8e-190 667.2 430 74.7
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 9.8e-190 667.2 445 73.3
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 1.7e-189 666.4 449 72.4
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 2.2e-189 666.0 410 78.0
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 4.8e-189 664.8 431 75.6
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 1.8e-188 662.9 432 73.8
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 2.4e-188 662.5 454 72.2
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 9.1e-188 660.6 463 68.3
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 1.2e-187 660.2 390 81.0
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 1.6e-187 659.8 430 74.7
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 4.5e-187 658.3 406 77.1
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 4.5e-187 658.3 455 71.0
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 8.6e-186 654.1 431 72.6
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 1.1e-185 653.7 406 76.6
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 3.3e-185 652.1 455 69.9
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 8.0e-184 647.5 422 73.2
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 1.4e-183 646.7 445 70.1
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 1.5e-182 643.3 451 70.5
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 2.6e-182 642.5 443 72.2
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 1.6e-179 633.3 438 69.6
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 1.9e-177 626.3 461 66.4
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 9.5e-177 624.0 375 80.8
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 8.9e-175 617.5 364 79.7
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 2.0e-174 616.3 383 76.2
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 9.8e-174 614.0 388 76.5
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 6.4e-165 584.7 456 65.6
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.3e-162 577.0 482 64.3
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 2.2e-157 559.7 384 70.6
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.5e-155 552.4 450 63.1
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 1.9e-148 530.0 471 58.6
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.0e-146 524.2 439 60.1
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 6.2e-144 515.0 418 60.3
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 2.6e-134 483.0 419 57.8
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 3.5e-123 446.0 319 68.3
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 1.2e-118 431.0 283 73.1
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 3.1e-111 406.4 436 49.8
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.6e-107 392.9 273 71.4
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 2.5e-105 386.7 235 79.1
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 6.3e-104 382.1 435 48.3
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 5.9e-102 375.6 431 46.2
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 5.1e-98 362.5 232 73.3
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 1.7e-93 347.4 383 49.1
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 8.8e-74 282.0 269 58.7
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 1.2e-73 281.6 163 82.2
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 5.2e-58 229.6 154 74.7
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 7.1e-47 192.6 126 73.0
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.6e-46 191.4 113 78.8
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 5.1e-45 186.4 462 30.7
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.9e-39 167.9 95 80.0
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 1.4e-34 151.8 440 28.9
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 3.8e-24 117.1 75 73.3
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 1.1e-23 115.5 84 63.1
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 1.2e-17 95.5 60 73.3
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 7.1e-15 86.3 79 58.2
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 5.8e-09 66.6 43 72.1
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 1.3e-08 65.5 43 69.8
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 2.1e-06 58.2 226 26.5
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 4.6e-06 57.0 147 29.3


User provided reference genes

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