Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10019428m.g Citrus clementina HOM05D008235 ORTHO05D009358 0.0e+00 1166.8 588 100.0
Thecc.04G179500 Theobroma cacao HOM05D008235 ORTHO05D009358 2.4e-105 387.1 581 45.3
Duzib212G0859 Durio zibethinus HOM05D008235 ORTHO05D009358 2.2e-90 337.4 583 41.7
QL10p049494 Quercus lobata HOM05D008235 ORTHO05D009358 1.1e-89 335.1 586 39.8
Haze_01504 Corylus avellana HOM05D008235 ORTHO05D009358 5.5e-86 322.8 508 42.7
Gohir.D02G114100 Gossypium hirsutum HOM05D008235 ORTHO05D009358 9.4e-86 322.0 582 40.5
Potri.007G128500 Populus trichocarpa HOM05D008235 ORTHO05D009358 4.9e-82 309.7 580 39.5
Gorai.005G128900 Gossypium raimondii HOM05D008235 ORTHO05D009358 1.4e-81 308.1 581 39.4
Gorai.011G142400 Gossypium raimondii HOM05D008235 ORTHO05D009358 4.1e-81 306.6 576 38.7
Manes.04G042909 Manihot esculenta HOM05D008235 ORTHO05D009358 8.3e-74 282.3 587 38.5
Potri.017G029800 Populus trichocarpa HOM05D008235 ORTHO05D009358 4.1e-73 280.0 590 37.5
Gohir.A10G137600 Gossypium hirsutum HOM05D008235 ORTHO05D009358 1.2e-67 261.9 497 37.4
Gohir.A03G088800 Gossypium hirsutum HOM05D008235 ORTHO05D009358 1.5e-67 261.5 508 39.0
Sabra07G0105000 Salix brachista HOM05D008235 ORTHO05D009358 5.8e-67 259.6 633 35.2
Manes.11G121000 Manihot esculenta HOM05D008235 ORTHO05D009358 1.6e-64 251.5 582 36.9
Sabra17G0019200 Salix brachista HOM05D008235 ORTHO05D009358 1.7e-63 248.1 535 36.8
Duzib268G0443 Durio zibethinus HOM05D008235 ORTHO05D009358 1.9e-62 244.6 401 38.9
Dinv22732 Davidia involucrata HOM05D008235 ORTHO05D009358 3.4e-59 233.8 505 36.8
TAR365G0029 Trochodendron aralioides HOM05D008235 ORTHO05D009358 3.0e-55 220.7 555 33.0
CANSAT78G2326 Cannabis sativa HOM05D008235 ORTHO05D009358 7.3e-54 216.1 572 33.4
Gohir.D10G129000 Gossypium hirsutum HOM05D008235 ORTHO05D009358 8.1e-53 212.6 459 34.6
COL.COLO4_07668 Corchorus olitorius HOM05D008235 ORTHO05D009358 8.6e-47 192.6 342 38.6
Dinv44188 Davidia involucrata HOM05D008235 ORTHO05D009358 3.4e-43 180.6 577 32.8
MD04G1040900 Malus domestica HOM05D008235 ORTHO05D009358 9.9e-43 179.1 462 32.5
GSVIVG01010760001 Vitis vinifera HOM05D008235 ORTHO05D009358 2.9e-42 177.6 544 34.2
Nn1g09629 Nelumbo nucifera HOM05D008235 ORTHO05D009358 4.9e-42 176.8 645 31.3
CSS0022265 Camellia sinensis var. sinensis HOM05D008235 ORTHO05D009358 6.4e-42 176.4 592 31.2
CSS0049607 Camellia sinensis var. sinensis HOM05D008235 ORTHO05D009358 3.5e-40 170.6 522 31.4
Cpa.g.sc9.283 Carica papaya HOM05D008235 ORTHO05D009358 1.4e-36 158.7 513 32.0
Lj3g0014084 Lotus japonicus HOM05D008235 ORTHO05D009358 5.8e-35 153.3 389 33.9
Actinidia34601 Actinidia chinensis HOM05D008235 ORTHO05D009358 2.2e-34 151.4 571 30.6
THA.LOC104800392 Tarenaya hassleriana HOM05D009929 ORTHO05D009358 2.9e-34 151.0 435 32.2
CiPaw.01G099800 Carya illinoinensis HOM05D008235 ORTHO05D009358 1.9e-33 148.3 308 35.4
Actinidia35979 Actinidia chinensis HOM05D008235 ORTHO05D009358 1.2e-32 145.6 564 30.5
TAR636G0036 Trochodendron aralioides HOM05D008235 ORTHO05D009358 6.6e-31 139.8 446 29.6
Lalb_Chr22g0352131 Lupinus albus HOM05D008235 ORTHO05D009358 1.1e-30 139.0 443 31.2
Ca_20789_v3 Cicer arietinum L. HOM05D008235 ORTHO05D009358 1.5e-30 138.7 379 31.9
THA.LOC104803712 Tarenaya hassleriana HOM05D009929 ORTHO05D009358 1.9e-30 138.3 395 31.4
Phvul.011G054200 Phaseolus vulgaris HOM05D008235 ORTHO05D009358 4.8e-29 133.7 376 34.3
Thhalv10005962m.g Eutrema salsugineum HOM05D009929 ORTHO05D009358 1.1e-28 132.5 474 29.7
VMungo1127G1046 Vigna mungo HOM05D008235 ORTHO05D009358 3.1e-28 131.0 373 31.9
Oeu053824.1 Olea europaea HOM05D008235 ORTHO05D009358 4.0e-28 130.6 552 29.2
Glyma.11G127600 Glycine max HOM05D008235 ORTHO05D009358 3.4e-27 127.5 363 30.9
AT3G59430 Arabidopsis thaliana HOM05D009929 ORTHO05D009358 5.8e-27 126.7 496 30.0
AL5G41340 Arabidopsis lyrata HOM05D009929 ORTHO05D009358 2.2e-26 124.8 502 28.9
Glyma.12G052200 Glycine max HOM05D008235 ORTHO05D009358 3.2e-25 120.9 366 32.2
ClCG07G015680 Citrullus lanatus HOM05D008235 ORTHO05D009358 5.5e-25 120.2 396 28.5
Carub.0005s2617 Capsella rubella HOM05D009929 ORTHO05D009358 2.1e-24 118.2 492 28.9
CsaV3_4G003430 Cucumis sativus L. HOM05D008235 ORTHO05D009358 2.1e-24 118.2 396 28.5
Aqoxy2G04121 Aquilegia oxysepala HOM05D008235 ORTHO05D009358 8.7e-23 112.8 598 28.6
Sp5g03710 Schrenkiella parvula HOM05D009929 ORTHO05D009358 1.5e-22 112.1 477 27.5
MELO3C017713.2 Cucumis melo HOM05D008235 ORTHO05D009358 9.6e-22 109.4 396 26.5
RhsimUnG0195000 Rhododendron simsii HOM05D008235 ORTHO05D009358 1.6e-21 108.6 475 25.1
Medtr4g067260 Medicago truncatula HOM05D008235 ORTHO05D009358 2.1e-21 108.2 385 31.9
BcaC07g40284 Brassica carinata HOM05D009929 ORTHO05D009358 6.2e-21 106.7 420 28.8
C08p34440 Brassica napus HOM05D009929 ORTHO05D009358 6.2e-21 106.7 420 28.8
BolC8t51045H Brassica oleracea HOM05D009929 ORTHO05D009358 6.2e-21 106.7 420 28.8
A09p51710 Brassica napus HOM05D009929 ORTHO05D009358 8.1e-21 106.3 464 27.4
BraA09t40607Z Brassica rapa HOM05D009929 ORTHO05D009358 8.1e-21 106.3 465 27.7
arahy.Tifrunner.gnm1.ann1.TK6P88 Arachis hypogaea HOM05D008235 ORTHO05D009358 1.4e-20 105.5 420 30.5
EL10Ac3g05943 Beta vulgaris HOM05D019141 ORTHO05D009358 1.5e-19 102.1 331 29.6
Glyma.13G344300 Glycine max HOM05D008235 ORTHO05D009358 2.6e-19 101.3 323 31.6
Sed0015774 Sechium edule HOM05D008235 ORTHO05D009358 4.5e-19 100.5 373 28.7
Aa31LG1G25120 Aethionema arabicum HOM05D009929 ORTHO05D006942 5.8e-19 100.1 379 30.6
arahy.Tifrunner.gnm1.ann1.V6VI7P Arachis hypogaea HOM05D008235 ORTHO05D009358 2.2e-18 98.2 390 31.3
vmacro00622 Vaccinium macrocarpon HOM05D008235 ORTHO05D009358 2.2e-18 98.2 503 26.4
CARHR169830 Cardamine hirsuta HOM05D009929 ORTHO05D009358 3.8e-18 97.4 495 27.1
AUR62015381 Chenopodium quinoa HOM05D019141 ORTHO05D009358 3.8e-18 97.4 412 27.2
BcaC07g40472 Brassica carinata HOM05D009929 ORTHO05D009358 6.5e-18 96.7 366 31.1
Rhsim09G0027400 Rhododendron simsii HOM05D008235 ORTHO05D009358 1.9e-17 95.1 541 23.3
Duzib151G0752 Durio zibethinus HOM05D008235 ORTHO05D009358 9.3e-17 92.8 140 49.3
AUR62002309 Chenopodium quinoa HOM05D019141 ORTHO05D009358 1.2e-16 92.4 478 26.4
Eucgr.A00083 Eucalyptus grandis HOM05D008235 ORTHO05D009358 7.9e-16 89.7 261 33.0
ATR0824G133 Amborella trichopoda HOM05D008235 ORTHO05D009358 3.1e-12 77.8 611 25.7
PSO675G1581 Papaver somniferum HOM05D066249 ORTHO05D009358 1.5e-11 75.5 384 28.1
Cc03_g12910 Coffea canephora HOM05D008235 ORTHO05D009358 1.3e-10 72.4 218 29.8
PSO017G5357 Papaver somniferum HOM05D066249 ORTHO05D009358 1.7e-10 72.0 386 28.2
BolC6t37781H Brassica oleracea HOM05D009929 ORTHO05D009358 2.5e-09 68.2 109 40.4
Glyma.15G030050 Glycine max HOM05D008235 ORTHO05D009358 2.5e-09 68.2 112 43.8
Psat7g208600 Pisum sativum HOM05D008235 ORTHO05D009358 2.5e-09 68.2 187 32.1
Hund03161 Selenicereus undatus HOM05D019141 ORTHO05D009358 5.5e-09 67.0 210 30.0
Sopen05g029150 Solanum pennellii HOM05D014650 ORTHO05D022197 5.5e-09 67.0 622 24.9
EL10Ac2g03579 Beta vulgaris HOM05D019141 ORTHO05D009358 9.3e-09 66.2 69 50.7
Sc13g0006760 Simmondsia chinensis HOM05D008235 ORTHO05D009358 1.6e-08 65.5 421 22.6
CAN.G112.20 Capsicum annuum HOM05D014650 ORTHO05D022197 3.5e-08 64.3 603 23.5
TPR.G34237 Trifolium pratense HOM05D008235 ORTHO05D009358 1.0e-07 62.8 95 43.2
Nitab4.5_0011467g0040 Nicotiana tabacum HOM05D014650 ORTHO05D009358 2.3e-07 61.6 113 38.9
Solyc05g050740.3 Solanum lycopersicum HOM05D014650 ORTHO05D009358 2.3e-07 61.6 476 23.3
C06p26180 Brassica napus HOM05D009929 ORTHO05D009358 3.9e-07 60.8 117 36.8
Os09g0514700 Oryza sativa ssp. japonica HOM05D028297 ORTHO05D037162 5.1e-07 60.5 393 23.7
Ah.13g072860 Amaranthus hybridus HOM05D019141 ORTHO05D009358 1.1e-06 59.3 278 24.1
Phvul.005G153000 Phaseolus vulgaris HOM05D008235 ORTHO05D009358 1.1e-06 59.3 103 42.7
BcaC08g44989 Brassica carinata HOM05D009929 ORTHO05D009358 2.5e-06 58.2 98 40.8
Peaxi162Scf01052g00325 Petunia axillaris HOM05D014650 ORTHO05D009358 3.3e-06 57.8 152 34.2


User provided reference genes

Program Settings