Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 0.0e+00 1180.2 619 100.0
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 4.0e-268 927.9 628 77.2
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 4.0e-268 927.9 628 77.2
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 2.3e-231 805.8 633 68.7
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 4.0e-228 795.0 640 66.1
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 1.2e-227 793.5 634 68.0
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 1.2e-227 793.5 631 67.8
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 3.4e-227 792.0 634 66.4
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 6.4e-226 787.7 635 65.2
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 3.5e-224 781.9 634 65.5
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 1.5e-222 776.5 624 68.1
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 3.1e-220 768.8 630 65.7
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 4.0e-220 768.5 626 66.9
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 2.0e-219 766.1 631 66.1
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 5.8e-219 764.6 647 62.4
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 1.7e-218 763.1 630 65.1
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 7.8e-216 754.2 631 65.9
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.0e-215 753.8 631 65.9
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 8.7e-215 750.7 635 63.9
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.6e-213 746.5 631 65.6
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.8e-213 745.7 647 61.1
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.6e-213 745.3 647 61.2
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.6e-213 745.3 647 61.2
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 6.2e-213 744.6 647 61.2
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.1e-212 743.8 647 60.9
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 1.4e-212 743.4 647 61.1
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 5.3e-212 741.5 631 63.4
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 6.9e-212 741.1 647 61.1
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.5e-211 740.0 647 61.1
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 7.6e-211 737.6 638 62.9
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 7.6e-211 737.6 630 63.0
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 1.1e-209 733.8 639 63.4
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 4.6e-208 728.4 633 63.2
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 6.0e-208 728.0 631 63.5
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 1.0e-207 727.2 623 64.0
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 1.0e-207 727.2 630 64.3
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 1.9e-206 723.0 632 62.5
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 2.8e-205 719.2 639 62.6
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 6.2e-205 718.0 631 62.1
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 5.8e-203 711.4 629 61.2
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 9.9e-203 710.7 633 62.1
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 2.3e-199 699.5 626 60.7
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 4.3e-198 695.3 631 60.4
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 5.6e-198 694.9 639 60.4
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 1.3e-197 693.7 641 60.1
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 1.4e-196 690.3 597 62.6
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 1.6e-192 676.8 638 58.6
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 1.6e-192 676.8 656 58.5
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 2.3e-191 672.9 639 59.3
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 6.7e-191 671.4 623 59.1
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 1.6e-189 666.8 652 57.5
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 6.3e-189 664.8 632 57.9
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 1.1e-188 664.1 623 58.6
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 7.6e-187 657.9 632 57.8
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 1.7e-186 656.8 651 56.8
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 1.9e-185 653.3 651 56.4
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 9.3e-185 651.0 649 57.0
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 6.1e-184 648.3 626 57.7
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 3.0e-183 646.0 629 57.6
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 8.7e-183 644.4 644 55.1
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 1.9e-182 643.3 630 57.0
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 1.6e-181 640.2 640 56.9
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 2.8e-181 639.4 621 56.5
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 1.1e-180 637.5 627 57.4
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 3.1e-180 636.0 624 57.5
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 6.9e-180 634.8 615 56.3
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 6.9e-180 634.8 621 58.0
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 1.2e-179 634.0 618 58.3
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 1.2e-179 634.0 624 57.4
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 2.0e-179 633.3 634 55.4
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 3.4e-179 632.5 628 58.0
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 4.5e-179 632.1 616 57.8
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 1.0e-178 630.9 652 53.2
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 1.7e-178 630.2 629 58.2
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 5.5e-177 625.2 622 56.4
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 1.6e-176 623.6 641 53.5
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 2.0e-174 616.7 636 55.3
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 3.3e-174 615.9 636 54.9
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 1.3e-173 614.0 647 52.9
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 1.1e-172 610.9 638 53.4
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 3.4e-171 605.9 591 59.1
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 7.7e-171 604.7 547 62.9
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 5.0e-170 602.1 642 54.0
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 7.2e-169 598.2 634 53.8
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 9.4e-169 597.8 568 59.7
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 6.3e-165 585.1 644 52.0
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 1.8e-164 583.6 653 50.8
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 5.3e-164 582.0 649 50.7
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 1.6e-163 580.5 614 51.6
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 3.8e-162 575.9 620 53.1
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 2.7e-160 569.7 617 52.8
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 2.0e-158 563.5 621 52.5
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 1.1e-156 557.8 615 50.7
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 7.0e-156 555.1 630 51.1
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 1.9e-153 547.0 642 49.1
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 1.9e-153 547.0 631 49.3
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 4.2e-153 545.8 586 53.2
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 4.2e-153 545.8 465 66.5
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 2.2e-149 533.5 653 49.2
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 8.3e-149 531.6 465 64.9
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 3.1e-148 529.6 615 50.4
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 5.5e-145 518.8 666 46.1
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 5.9e-139 498.8 417 64.7
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 6.6e-138 495.4 618 46.3
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 6.6e-138 495.4 621 46.4
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 6.6e-138 495.4 661 44.6
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 8.6e-138 495.0 431 63.8
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 4.9e-133 479.2 625 50.1
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 3.2e-132 476.5 669 43.3
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 1.7e-130 470.7 495 53.7
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 3.1e-127 459.9 620 47.7
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 5.0e-122 442.6 630 45.2
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 2.3e-119 433.7 414 57.7
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 6.6e-114 415.6 617 44.9
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 9.5e-113 411.8 599 45.4
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 1.0e-106 391.7 619 43.1
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 1.1e-105 388.3 386 55.2
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 1.1e-103 381.7 332 62.0
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 1.4e-103 381.3 620 41.6
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 6.9e-103 379.0 620 41.6
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 2.9e-101 373.6 620 41.5
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 2.9e-101 373.6 345 60.6
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 1.4e-100 371.3 620 41.3
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 3.5e-99 366.7 389 54.0
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 4.0e-95 353.2 603 39.6
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 4.0e-87 326.6 606 38.6
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 4.8e-80 303.1 678 33.3
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 6.9e-79 299.3 603 37.8
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.4e-78 297.0 602 37.5
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.1e-74 283.1 605 36.2
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 6.9e-71 272.7 586 38.4
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 2.5e-65 254.2 531 38.4
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.2e-62 245.4 553 34.4
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 1.1e-52 212.2 313 44.1
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 7.2e-52 209.5 169 68.0
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 1.4e-47 195.3 637 28.9
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 3.1e-47 194.1 243 47.3
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 3.2e-44 184.1 191 57.6
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 2.2e-40 171.4 144 63.2
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 5.3e-39 166.8 114 73.7
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 3.5e-38 164.1 167 55.1
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 4.5e-38 163.7 120 73.3
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 1.6e-35 155.2 116 68.1
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 2.8e-32 144.4 366 33.6
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 2.3e-29 134.8 94 72.3
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 1.5e-28 132.1 105 65.7
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 4.2e-28 130.6 157 49.7
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 7.2e-28 129.8 94 69.1
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 1.2e-27 129.0 90 67.8
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 2.2e-24 118.2 348 29.6
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 3.7e-24 117.5 92 64.1
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 1.4e-23 115.5 109 58.7
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 1.8e-23 115.2 90 64.4
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 1.2e-22 112.5 133 49.6
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 1.3e-21 109.0 90 62.2
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 1.9e-20 105.1 72 70.8
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 3.3e-20 104.4 160 40.6
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 3.3e-20 104.4 108 57.4
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 2.3e-18 98.2 85 56.5
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 1.7e-16 92.0 218 35.3
SalBow3G4229 Salvia bowleyana HOM05D001997 ORTHO05D004620 6.4e-16 90.1 115 48.7
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 1.9e-15 88.6 218 35.3
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 1.9e-15 88.6 218 35.3
Actinidia11446 Actinidia chinensis HOM05D001997 ORTHO05D004620 2.0e-14 85.1 175 36.6
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 7.3e-12 76.6 49 69.4
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 9.5e-12 76.3 80 52.5
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 6.2e-11 73.6 96 42.7
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 1.1e-10 72.8 54 70.4
Hund00190 Selenicereus undatus HOM05D001997 ORTHO05D004620 1.8e-10 72.0 116 41.4
FAN10G4060 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.8e-09 67.0 63 58.7
BcaC01g05247 Brassica carinata HOM05D001997 ORTHO05D004620 3.7e-08 64.3 69 56.5
BcaB01g03396 Brassica carinata HOM05D001623 ORTHO05D001473 2.1e-06 58.5 48 58.3
BcaC01g05246 Brassica carinata HOM05D001997 ORTHO05D004620 2.7e-06 58.2 85 37.6


User provided reference genes

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