Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10019191m.g Citrus clementina HOM05D004311 ORTHO05D005145 0.0e+00 1287.3 667 100.0
Atru.chr5.2612 Acer truncatum HOM05D004311 ORTHO05D005145 9.8e-148 528.1 544 56.1
Thecc.04G184200 Theobroma cacao HOM05D004311 ORTHO05D005145 8.9e-141 505.0 726 47.5
Atru.chr3.1596 Acer truncatum HOM05D004311 ORTHO05D005145 1.2e-137 494.6 737 46.4
Manes.11G116001 Manihot esculenta HOM05D004311 ORTHO05D005145 1.3e-131 474.6 638 47.5
Gorai.011G145800 Gossypium raimondii HOM05D004311 ORTHO05D005145 1.4e-130 471.1 717 46.4
Gohir.A10G134400 Gossypium hirsutum HOM05D004311 ORTHO05D005145 6.0e-129 465.7 716 46.1
Gohir.D10G132100 Gossypium hirsutum HOM05D004311 ORTHO05D005145 1.7e-128 464.2 717 46.0
Potri.007G124150 Populus trichocarpa HOM05D004311 ORTHO05D005145 3.3e-127 459.9 637 49.3
TWI34G1341 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 3.1e-125 453.4 657 46.6
Potri.017G036200 Populus trichocarpa HOM05D004311 ORTHO05D005145 2.9e-123 446.8 621 47.7
Sabra17G0023900 Salix brachista HOM05D004311 ORTHO05D005145 4.2e-122 443.0 586 48.5
Cfa015780 Carpinus fangiana HOM05D004311 ORTHO05D005145 1.5e-119 434.5 494 53.0
CiPaw.01G102900 Carya illinoinensis HOM05D004311 ORTHO05D005145 4.3e-119 433.0 721 43.7
Actinidia35905 Actinidia chinensis HOM05D004311 ORTHO05D005145 3.6e-118 429.9 744 40.9
Dinv44218 Davidia involucrata HOM05D004311 ORTHO05D005145 5.3e-117 426.0 675 44.0
Eucgr.A00251 Eucalyptus grandis HOM05D004311 ORTHO05D005145 1.6e-113 414.5 537 48.8
GSVIVG01013563001 Vitis vinifera HOM05D004311 ORTHO05D005145 7.9e-113 412.1 697 42.3
Haze_00714 Corylus avellana HOM05D004311 ORTHO05D005145 1.3e-112 411.4 800 40.9
QL10p045440 Quercus lobata HOM05D004311 ORTHO05D005145 5.1e-112 409.5 901 37.0
FAN17G0085 Fragaria x ananassa HOM05D004311 ORTHO05D005145 4.5e-108 396.4 665 42.6
Duzib268G0197 Durio zibethinus HOM05D004311 ORTHO05D005145 1.3e-107 394.8 439 53.5
COL.COLO4_24387 Corchorus olitorius HOM05D004311 ORTHO05D005145 5.5e-106 389.4 792 38.5
FAN07G0445 Fragaria x ananassa HOM05D004311 ORTHO05D005145 3.5e-105 386.7 666 41.6
FvH4_4g11290 Fragaria vesca HOM05D004311 ORTHO05D005145 1.0e-104 385.2 630 42.5
PGR083G0820 Punica granatum HOM05D004311 ORTHO05D005145 8.7e-104 382.1 690 40.1
arahy.Tifrunner.gnm1.ann1.TTS68P Arachis hypogaea HOM05D004311 ORTHO05D005145 1.5e-100 371.3 605 43.8
Sopen09g036480 Solanum pennellii HOM05D004311 ORTHO05D005145 3.4e-100 370.2 540 44.8
THA.LOC104821356 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 3.4e-100 370.2 567 43.2
Solyc09g098560.2 Solanum lycopersicum HOM05D004311 ORTHO05D005145 1.7e-99 367.9 571 43.4
Sed0012126 Sechium edule HOM05D004311 ORTHO05D005145 8.5e-99 365.5 636 42.5
arahy.Tifrunner.gnm1.ann1.D3CYL9 Arachis hypogaea HOM05D004311 ORTHO05D005145 1.9e-98 364.4 604 42.9
Rhsim09G0031800 Rhododendron simsii HOM05D004311 ORTHO05D005145 2.5e-98 364.0 599 41.9
Cc03_g13030 Coffea canephora HOM05D004311 ORTHO05D005145 1.3e-96 358.2 432 51.2
CsaV3_4G003570 Cucumis sativus L. HOM05D004311 ORTHO05D005145 1.1e-95 355.1 620 40.8
CANSAT11G1749 Cannabis sativa HOM05D004311 ORTHO05D005145 7.4e-95 352.4 419 49.4
Nitab4.5_0006710g0020 Nicotiana tabacum HOM05D004311 ORTHO05D005145 3.1e-93 347.1 507 44.2
Ca_11399_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 4.1e-93 346.7 596 42.4
Ca_11402_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 4.1e-93 346.7 596 42.4
Ca_29593_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 4.1e-93 346.7 596 42.4
Peaxi162Scf00319g00915 Petunia axillaris HOM05D004311 ORTHO05D005145 4.1e-93 346.7 441 50.3
Glyma.20G245800 Glycine max HOM05D004311 ORTHO05D005145 1.2e-92 345.1 419 50.1
Dinv22688 Davidia involucrata HOM05D004311 ORTHO05D005145 1.5e-92 344.7 449 47.9
Medtr1g116530 Medicago truncatula HOM05D004311 ORTHO05D005145 7.7e-92 342.4 428 49.1
SGA_v2.0_scaffold12G06156 Striga asiatica HOM05D004311 ORTHO05D005145 5.0e-91 339.7 439 46.5
Glyma.10G295800 Glycine max HOM05D004311 ORTHO05D005145 1.4e-90 338.2 435 48.0
Lj5g0018220 Lotus japonicus HOM05D004311 ORTHO05D005145 3.2e-90 337.0 500 44.2
CAN.G710.65 Capsicum annuum HOM05D004311 ORTHO05D005145 4.2e-90 336.7 428 49.3
Phvul.007G004100 Phaseolus vulgaris HOM05D004311 ORTHO05D005145 3.6e-89 333.6 509 44.8
Lj6A60T46 Lonicera japonica HOM05D004311 ORTHO05D005145 1.8e-88 331.3 343 58.0
Lalb_Chr21g0307601 Lupinus albus HOM05D004311 ORTHO05D005145 3.9e-88 330.1 419 48.9
vmacro00589 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 1.5e-87 328.2 323 57.9
Sc19g0002150 Simmondsia chinensis HOM05D004311 ORTHO05D005145 3.3e-87 327.0 505 43.8
TPR.G10413 Trifolium pratense HOM05D004311 ORTHO05D005145 1.7e-86 324.7 415 50.1
TAR375G1135 Trochodendron aralioides HOM05D004311 ORTHO05D005145 1.7e-86 324.7 536 40.7
MSTRG.20570 Avicennia marina HOM05D004311 ORTHO05D005145 2.2e-86 324.3 526 43.0
MELO3C017696.2 Cucumis melo HOM05D004311 ORTHO05D005145 1.8e-85 321.2 429 48.0
MD04G1038300 Malus domestica HOM05D004311 ORTHO05D005145 5.3e-85 319.7 297 60.3
Actinidia33018 Actinidia chinensis HOM05D004311 ORTHO05D005145 1.5e-84 318.2 455 45.3
Sabra17G0023400 Salix brachista HOM05D004311 ORTHO05D005145 1.5e-84 318.2 354 53.1
Hund12225 Selenicereus undatus HOM05D004311 ORTHO05D005145 2.6e-84 317.4 461 43.4
Nn2g11494 Nelumbo nucifera HOM05D004311 ORTHO05D005145 5.9e-84 316.2 596 36.6
Aqoxy5G04052 Aquilegia oxysepala HOM05D004311 ORTHO05D005145 1.0e-83 315.5 448 44.4
VMungo0720G0448 Vigna mungo HOM05D004311 ORTHO05D005145 1.0e-83 315.5 567 41.1
RcHm_v2.0_Chr4g0407531 Rosa chinensis HOM05D004311 ORTHO05D005145 2.9e-83 313.9 345 53.0
Nitab4.5_0000526g0040 Nicotiana tabacum HOM05D004311 ORTHO05D005145 3.2e-82 310.5 291 59.5
Lsat_1_v5_gn_6_54900 Lactuca sativa HOM05D004311 ORTHO05D005145 5.5e-82 309.7 576 39.2
SalBow3G3821 Salvia bowleyana HOM05D004311 ORTHO05D005145 9.4e-82 308.9 459 45.5
Psat6g241440 Pisum sativum HOM05D004311 ORTHO05D005145 2.1e-81 307.8 503 42.9
HanXRQChr07g0186701 Helianthus annuus HOM05D004311 ORTHO05D005145 7.9e-81 305.8 546 41.9
EL10Ac3g06308 Beta vulgaris HOM05D004311 ORTHO05D005145 1.4e-80 305.1 681 36.1
AUR62002610 Chenopodium quinoa HOM05D004311 ORTHO05D005145 2.0e-79 301.2 660 35.6
Aa31LG2G1780 Aethionema arabicum HOM05D004311 ORTHO05D005145 1.8e-77 294.7 691 35.2
Migut.G01038 Erythranthe guttata HOM05D004311 ORTHO05D005145 3.1e-77 293.9 460 41.5
unitig_8.g3035 Utricularia gibba HOM05D004311 ORTHO05D005145 7.0e-77 292.7 422 42.9
AUR62030033 Chenopodium quinoa HOM05D004311 ORTHO05D005145 2.0e-76 291.2 611 35.0
ClCG07G015850 Citrullus lanatus HOM05D004311 ORTHO05D005145 3.5e-76 290.4 327 53.5
DCAR_028443 Daucus carota HOM05D004311 ORTHO05D005145 1.0e-75 288.9 503 41.0
MBI08_g33649_MAGBIO Magnolia biondii HOM05D004311 ORTHO05D005145 2.9e-75 287.3 712 34.0
TWI60G0507 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 3.8e-75 287.0 558 39.8
CDE02G0781 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 1.9e-74 284.6 466 40.3
Carub.0004s2496 Capsella rubella HOM05D004311 ORTHO05D005145 4.2e-74 283.5 679 35.9
Sp4g24640 Schrenkiella parvula HOM05D004311 ORTHO05D005145 9.4e-74 282.3 670 34.8
Nitab4.5_0004962g0030 Nicotiana tabacum HOM05D004311 ORTHO05D005145 2.7e-73 280.8 452 41.8
BcaC02g12437 Brassica carinata HOM05D004311 ORTHO05D005145 2.6e-71 274.2 659 34.1
BraA05t19299Z Brassica rapa HOM05D004311 ORTHO05D005145 5.7e-71 273.1 659 34.7
CDE09G0340 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 1.7e-70 271.6 466 39.1
A05p03080 Brassica napus HOM05D004311 ORTHO05D005145 8.2e-70 269.2 671 34.4
BcaNung03232 Brassica carinata HOM05D004311 ORTHO05D005145 2.0e-68 264.6 664 34.0
BolC4t22005H Brassica oleracea HOM05D004311 ORTHO05D005145 3.5e-68 263.8 653 33.8
C04p03710 Brassica napus HOM05D004311 ORTHO05D005145 7.7e-68 262.7 659 33.1
Cpa.g.sc73.18 Carica papaya HOM05D004311 ORTHO05D005145 7.7e-68 262.7 226 61.1
Duzib151G0942 Durio zibethinus HOM05D004311 ORTHO05D005145 7.7e-68 262.7 502 39.8
HPP92_009171 Vanilla planifolia HOM05D004311 ORTHO05D005145 7.7e-68 262.7 417 40.8
BcaC02g07234 Brassica carinata HOM05D004311 ORTHO05D005145 1.5e-66 258.5 606 34.5
SHI06503 Sapria himalayana HOM05D004311 ORTHO05D005145 3.2e-66 257.3 362 45.0
AT1G54380 Arabidopsis thaliana HOM05D004311 ORTHO05D005145 9.4e-66 255.8 595 35.0
CARHR055450 Cardamine hirsuta HOM05D004311 ORTHO05D005145 9.4e-66 255.8 654 35.0
Prupe.1G189100 Prunus persica HOM05D004311 ORTHO05D005145 6.1e-65 253.1 256 57.4
C04p69770 Brassica napus HOM05D004311 ORTHO05D005145 1.0e-64 252.3 650 33.2
PSO675G5961 Papaver somniferum HOM05D004311 ORTHO05D005145 6.3e-62 243.0 487 37.2
PSO017G7323 Papaver somniferum HOM05D004311 ORTHO05D005145 8.3e-62 242.7 492 36.6
FAN22G0235 Fragaria x ananassa HOM05D004311 ORTHO05D005820 7.0e-61 239.6 255 53.3
Zm00001eb248350 Zea mays HOM05D004311 ORTHO05D005145 2.9e-59 234.2 421 39.9
Os11g0293300 Oryza sativa ssp. japonica HOM05D004311 ORTHO05D005145 1.9e-58 231.5 420 38.1
ATR0743G139 Amborella trichopoda HOM05D004311 ORTHO05D005145 1.0e-56 225.7 422 37.9
Oeu007717.1 Olea europaea HOM05D004311 ORTHO05D005145 6.3e-54 216.5 305 45.2
Lalb_Chr02g0144311 Lupinus albus HOM05D004311 ORTHO05D005145 1.6e-49 201.8 324 44.4
SEGI_09077 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 5.2e-48 196.8 302 41.1
Prupe.1G188800 Prunus persica HOM05D004311 ORTHO05D005145 8.9e-48 196.1 408 38.7
SMO273G0052 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 1.1e-45 189.1 290 40.3
SMO351G0426 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 4.1e-45 187.2 293 40.3
Pp3c18_5230 Physcomitrium patens HOM05D004311 ORTHO05D005145 1.3e-43 182.2 352 37.2
CBR_g48670 Chara braunii HOM05D004311 ORTHO05D005145 3.9e-43 180.6 375 34.9
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 2.1e-41 174.9 190 56.8
BcaB06g29252 Brassica carinata HOM05D004311 ORTHO05D005145 8.0e-41 172.9 660 28.0
AagrBONN_evm.TU.Sc2ySwM_228.1282 Anthoceros agrestis HOM05D004311 ORTHO05D005145 3.1e-40 171.0 412 32.3
SMO174G0256 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 7.8e-36 156.4 296 35.1
BcaNung05216 Brassica carinata HOM05D004311 ORTHO05D005145 3.0e-35 154.5 646 27.4
Thhalv10017985m.g Eutrema salsugineum HOM05D004311 ORTHO05D005145 5.8e-31 140.2 224 40.6
TWI60G1520 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 5.8e-31 140.2 107 68.2
Mapoly0064s0042 Marchantia polymorpha HOM05D004311 ORTHO05D005145 3.5e-28 131.0 258 37.2
Sabra07G0100500 Salix brachista HOM05D004311 ORTHO05D005145 8.9e-24 116.3 287 36.6
CSS0021437 Camellia sinensis var. sinensis HOM05D004311 ORTHO05D005145 3.4e-23 114.4 357 33.1
Nitab4.5_0001049g0080 Nicotiana tabacum HOM05D004311 ORTHO05D005145 2.7e-20 104.8 256 32.0
RcHm_v2.0_Chr4g0407521 Rosa chinensis HOM05D004311 ORTHO05D005145 2.7e-20 104.8 348 33.0
MD04G1038400 Malus domestica HOM05D004311 ORTHO05D005145 1.5e-18 99.0 428 29.9
BcaNung00544 Brassica carinata HOM05D004311 ORTHO05D005145 2.5e-18 98.2 88 55.7
CANSAT01G2758 Cannabis sativa HOM05D004311 ORTHO05D005145 1.1e-16 92.8 283 30.7
MCO03G002 Micromonas commoda HOM05D004311 ORTHO05D005145 3.1e-16 91.3 285 29.5
CANSAT78G0609 Cannabis sativa HOM05D004311 ORTHO05D005145 1.3e-14 85.9 291 28.5
Oeu050349.1 Olea europaea HOM05D004311 ORTHO05D005145 1.1e-13 82.8 162 38.9
CARHR137580 Cardamine hirsuta HOM05D004311 ORTHO05D005145 1.9e-13 82.0 204 31.9
PGSC0003DMG400021611 Solanum tuberosum HOM05D004311 ORTHO05D005145 5.4e-13 80.5 204 32.8
vmacro00590 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 5.4e-13 80.5 172 35.5
THA.LOC104798849 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 7.1e-13 80.1 229 32.8
Thhalv10016741m.g Eutrema salsugineum HOM05D004311 ORTHO05D005145 1.3e-11 75.9 232 31.0
BolC4t28477H Brassica oleracea HOM05D004311 ORTHO05D005145 6.6e-11 73.6 319 27.3
AT2G42510 Arabidopsis thaliana HOM05D004311 ORTHO05D026863 3.3e-10 71.2 218 30.7
Cre09.g405650 Chlamydomonas reinhardtii HOM05D004311 ORTHO05D005145 1.6e-09 68.9 71 49.3
CARHR137590 Cardamine hirsuta HOM05D004311 ORTHO05D005145 2.8e-09 68.2 48 68.8
AL4G41050 Arabidopsis lyrata HOM05D004311 ORTHO05D005145 3.6e-09 67.8 337 25.5
Cpa.g.sc1876.1 Carica papaya HOM05D004311 ORTHO05D005145 3.6e-09 67.8 112 36.6
SGA_v2.0_scaffold290G47298 Striga asiatica HOM05D002786 ORTHO05D003493 3.6e-09 67.8 59 57.6
TAR362G0891 Trochodendron aralioides HOM05D015611 ORTHO05D005145 1.4e-08 65.9 284 27.1
PSO170G3519 Papaver somniferum HOM05D015611 ORTHO05D026019 2.9e-06 58.2 66 47.0
Hma1.2p1_0429F.1_g151120 Hydrangea macrophylla HOM05D004311 ORTHO05D005145 3.8e-06 57.8 118 34.7
PSO339G0153 Papaver somniferum HOM05D015611 ORTHO05D026019 3.8e-06 57.8 91 40.7
PSO339G2231 Papaver somniferum HOM05D015611 ORTHO05D026019 6.4e-06 57.0 130 32.3
PSO384G3421 Papaver somniferum HOM05D015611 ORTHO05D026019 6.4e-06 57.0 118 37.3
TAR374G0693 Trochodendron aralioides HOM05D015611 ORTHO05D005145 8.4e-06 56.6 66 40.9


User provided reference genes

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