Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10019067m.g Citrus clementina HOM05D003900 ORTHO05D005009 4.7e-196 688.7 712 100.0
Atru.chr5.563 Acer truncatum HOM05D003900 ORTHO05D005009 7.7e-90 335.9 366 53.0
Atru.chr5.581 Acer truncatum HOM05D003900 ORTHO05D005009 1.0e-89 335.5 366 53.3
Thecc.01G352500 Theobroma cacao HOM05D003900 ORTHO05D005009 7.4e-69 266.2 370 45.1
Dinv43863 Davidia involucrata HOM05D003900 ORTHO05D005009 2.2e-68 264.6 369 44.2
Haze_15564 Corylus avellana HOM05D003900 ORTHO05D005009 7.7e-66 256.1 340 47.1
Gohir.D12G110200 Gossypium hirsutum HOM05D003900 ORTHO05D005009 2.3e-62 244.6 351 41.6
QL04p055515 Quercus lobata HOM05D003900 ORTHO05D005009 2.3e-62 244.6 369 43.6
Gorai.008G119500 Gossypium raimondii HOM05D003900 ORTHO05D005009 8.8e-62 242.7 351 41.6
Duzib138G1643 Durio zibethinus HOM05D003900 ORTHO05D005009 1.5e-61 241.9 341 41.9
CiPaw.01G066800 Carya illinoinensis HOM05D003900 ORTHO05D005009 2.2e-60 238.0 343 44.0
Gohir.A12G106900 Gossypium hirsutum HOM05D003900 ORTHO05D005009 2.2e-60 238.0 360 40.0
CiPaw.01G067500 Carya illinoinensis HOM05D003900 ORTHO05D005009 2.8e-60 237.7 340 43.8
Manes.05G029400 Manihot esculenta HOM05D003900 ORTHO05D005009 6.3e-60 236.5 346 42.5
Potri.014G090400 Populus trichocarpa HOM05D003900 ORTHO05D005009 1.8e-59 235.0 341 41.6
Manes.01G252300 Manihot esculenta HOM05D003900 ORTHO05D005009 4.1e-59 233.8 347 40.9
CiPaw.01G067100 Carya illinoinensis HOM05D003900 ORTHO05D005009 5.3e-59 233.4 341 42.5
vmacro13229 Vaccinium macrocarpon HOM05D003900 ORTHO05D005009 1.6e-58 231.9 347 41.2
Sabra14G0065500 Salix brachista HOM05D003900 ORTHO05D005009 2.7e-58 231.1 355 40.3
GSVIVG01026966001 Vitis vinifera HOM05D003900 ORTHO05D005009 5.9e-58 229.9 313 44.7
THA.LOC104817316 Tarenaya hassleriana HOM05D003900 ORTHO05D005009 1.7e-57 228.4 344 41.6
Rhsim07G0010500 Rhododendron simsii HOM05D003900 ORTHO05D005009 3.8e-57 227.3 354 40.4
CSS0000093 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 1.5e-56 225.3 327 40.4
CSS0016355 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 1.5e-56 225.3 327 40.4
Prupe.2G177500 Prunus persica HOM05D003900 ORTHO05D005009 3.2e-56 224.2 361 39.6
TWI23G0979 Tripterygium wilfordii HOM05D003900 ORTHO05D005009 3.2e-56 224.2 325 43.7
RcHm_v2.0_Chr7g0228211 Rosa chinensis HOM05D003900 ORTHO05D005009 4.2e-56 223.8 357 38.7
Duzib133G1046 Durio zibethinus HOM05D003900 ORTHO05D005009 9.4e-56 222.6 365 38.4
CiPaw.01G067300 Carya illinoinensis HOM05D003900 ORTHO05D005009 1.2e-55 222.2 341 41.1
Aa31LG10G15460 Aethionema arabicum HOM05D003900 ORTHO05D005009 1.4e-54 218.8 346 40.5
MD07G1131300 Malus domestica HOM05D003900 ORTHO05D005009 1.4e-54 218.8 333 39.6
RcHm_v2.0_Chr1g0357681 Rosa chinensis HOM05D003900 ORTHO05D005009 1.8e-54 218.4 356 39.9
CiPaw.01G067200 Carya illinoinensis HOM05D003900 ORTHO05D005009 5.2e-54 216.9 346 38.7
CiPaw.01G067400 Carya illinoinensis HOM05D003900 ORTHO05D005009 6.8e-54 216.5 345 39.4
RcHm_v2.0_Chr3g0468501 Rosa chinensis HOM05D003900 ORTHO05D005009 5.7e-53 213.4 298 43.3
CiPaw.01G066600 Carya illinoinensis HOM05D003900 ORTHO05D005009 1.7e-52 211.8 302 40.7
COL.COLO4_12777 Corchorus olitorius HOM05D003900 ORTHO05D005009 2.2e-52 211.5 276 44.9
CARHR171850 Cardamine hirsuta HOM05D003900 ORTHO05D005009 3.7e-52 210.7 348 37.9
AL5G43880 Arabidopsis lyrata HOM05D003900 ORTHO05D005009 4.9e-52 210.3 356 38.8
PGSC0003DMG400000195 Solanum tuberosum HOM05D003900 ORTHO05D005009 8.3e-52 209.5 347 39.8
CANSAT56G3111 Cannabis sativa HOM05D003900 ORTHO05D005009 1.8e-51 208.4 360 38.1
Sp4g28170 Schrenkiella parvula HOM05D003900 ORTHO05D005009 1.8e-51 208.4 354 38.1
Cc02_g38560 Coffea canephora HOM05D003900 ORTHO05D005009 2.4e-51 208.0 360 36.9
AT5G28370 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 5.4e-51 206.8 364 37.9
AT5G28460 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 5.4e-51 206.8 364 37.9
AT3G61520 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 7.0e-51 206.5 349 38.4
TAR629G0263 Trochodendron aralioides HOM05D003900 ORTHO05D005009 7.0e-51 206.5 344 38.4
Carub.0005s2821 Capsella rubella HOM05D003900 ORTHO05D005009 1.2e-50 205.7 349 37.8
Nitab4.5_0010695g0010 Nicotiana tabacum HOM05D003900 ORTHO05D005009 2.0e-50 204.9 357 39.8
Solyc01g095110.4 Solanum lycopersicum HOM05D003900 ORTHO05D005009 2.7e-50 204.5 365 38.6
Aa31LG1G27520 Aethionema arabicum HOM05D003900 ORTHO05D005009 3.5e-50 204.1 353 38.0
Lj7C507T1 Lonicera japonica HOM05D003900 ORTHO05D005009 3.5e-50 204.1 355 38.3
Thhalv10022571m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 1.3e-49 202.2 355 38.3
Nitab4.5_0000915g0110 Nicotiana tabacum HOM05D003900 ORTHO05D005009 1.3e-49 202.2 342 39.8
CAN.G78.130 Capsicum annuum HOM05D003900 ORTHO05D005009 1.7e-49 201.8 331 38.7
FAN04G0755 Fragaria x ananassa HOM05D003900 ORTHO05D005009 5.0e-49 200.3 354 36.7
Sopen01g038900 Solanum pennellii HOM05D003900 ORTHO05D005009 5.0e-49 200.3 328 39.0
FvH4_5g32150 Fragaria vesca HOM05D003900 ORTHO05D005009 1.9e-48 198.4 356 36.5
Sc01g0003220 Simmondsia chinensis HOM05D003900 ORTHO05D005009 9.5e-48 196.1 330 38.5
Thhalv10001319m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 1.6e-47 195.3 341 38.4
Cfa003873 Carpinus fangiana HOM05D003900 ORTHO05D005009 3.6e-47 194.1 341 39.3
Peaxi162Scf00020g00155 Petunia axillaris HOM05D003900 ORTHO05D005009 1.4e-46 192.2 343 38.2
EL10Ac1g00355 Beta vulgaris HOM05D003900 ORTHO05D005009 3.0e-46 191.0 376 36.7
AUR62004412 Chenopodium quinoa HOM05D003900 ORTHO05D005009 4.0e-46 190.7 340 36.5
BolC6t37920H Brassica oleracea HOM05D003900 ORTHO05D005009 6.8e-46 189.9 351 37.0
FvH4_5g03011 Fragaria vesca HOM05D003900 ORTHO05D005009 6.8e-46 189.9 344 36.3
C06p27530 Brassica napus HOM05D003900 ORTHO05D005009 8.9e-46 189.5 351 37.0
AUR62022618 Chenopodium quinoa HOM05D003900 ORTHO05D005009 8.9e-46 189.5 336 37.5
BcaC08g45129 Brassica carinata HOM05D003900 ORTHO05D005009 1.5e-45 188.7 351 37.0
A07p25540 Brassica napus HOM05D003900 ORTHO05D005009 1.5e-45 188.7 353 37.4
BraA07t30195Z Brassica rapa HOM05D003900 ORTHO05D005009 1.5e-45 188.7 352 37.5
BcaB02g07375 Brassica carinata HOM05D003900 ORTHO05D005009 2.0e-45 188.3 346 37.3
PGR142G0969 Punica granatum HOM05D003900 ORTHO05D005009 1.3e-44 185.7 438 41.8
Migut.B01798 Erythranthe guttata HOM05D003900 ORTHO05D005009 4.9e-44 183.7 334 35.9
FvH4_7g15360 Fragaria vesca HOM05D003900 ORTHO05D005009 6.3e-44 183.3 359 37.0
FAN03G2211 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.1e-43 182.6 359 36.5
FAN10G3614 Fragaria x ananassa HOM05D003900 ORTHO05D005009 3.2e-43 181.0 363 35.8
SGA_v2.0_scaffold4G02283 Striga asiatica HOM05D003900 ORTHO05D005009 4.1e-43 180.6 343 33.8
Lsat_1_v5_gn_7_2720 Lactuca sativa HOM05D003900 ORTHO05D005009 1.0e-41 176.0 355 34.4
HanXRQChr04g0120801 Helianthus annuus HOM05D003900 ORTHO05D005009 1.7e-41 175.3 340 33.5
SalBow3G3666 Salvia bowleyana HOM05D003900 ORTHO05D005009 1.7e-41 175.3 342 33.3
CARHR141390 Cardamine hirsuta HOM05D003900 ORTHO05D005009 3.9e-41 174.1 242 43.0
Eucgr.E00097 Eucalyptus grandis HOM05D003900 ORTHO05D005009 1.1e-40 172.6 356 32.9
arahy.Tifrunner.gnm1.ann1.U9H0N8 Arachis hypogaea HOM05D003900 ORTHO05D005009 7.3e-40 169.9 369 35.8
FAN06G2614 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.8e-38 165.2 436 31.7
arahy.Tifrunner.gnm1.ann1.K45FBX Arachis hypogaea HOM05D003900 ORTHO05D005009 5.2e-38 163.7 369 35.0
VMungo0251G1173 Vigna mungo HOM05D003900 ORTHO05D005009 2.6e-37 161.4 331 34.4
FAN06G4981 Fragaria x ananassa HOM05D003900 ORTHO05D005009 7.5e-37 159.8 353 34.6
Ah.15g096610 Amaranthus hybridus HOM05D003900 ORTHO05D005009 1.3e-36 159.1 361 33.5
MD01G1071400 Malus domestica HOM05D003900 ORTHO05D005009 4.9e-36 157.1 298 48.3
Phvul.002G326200 Phaseolus vulgaris HOM05D003900 ORTHO05D005009 4.9e-36 157.1 335 33.7
Nn1g01685 Nelumbo nucifera HOM05D003900 ORTHO05D005009 8.3e-36 156.4 283 34.3
FAN01G0431 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.7e-33 148.7 298 32.6
Lj4g0005982 Lotus japonicus HOM05D003900 ORTHO05D005009 6.6e-33 146.7 360 33.3
DCAR_025213 Daucus carota HOM05D003900 ORTHO05D005009 2.5e-32 144.8 347 32.0
Glyma.16G031800 Glycine max HOM05D003900 ORTHO05D005009 9.5e-32 142.9 355 32.4
Actinidia20162 Actinidia chinensis HOM05D003900 ORTHO05D005009 6.2e-31 140.2 199 44.7
MBI11_g19575_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 1.1e-30 139.4 433 37.2
Dinv32521 Davidia involucrata HOM05D003900 ORTHO05D005009 5.8e-29 133.7 188 42.6
Aqoxy7G01955 Aquilegia oxysepala HOM05D003900 ORTHO05D005009 3.7e-28 131.0 234 37.6
FAN06G0440 Fragaria x ananassa HOM05D003900 ORTHO05D005009 8.3e-28 129.8 208 38.0
CsaV3_7G025780 Cucumis sativus L. HOM05D003900 ORTHO05D005009 1.4e-27 129.0 215 34.9
Lalb_Chr04g0259301 Lupinus albus HOM05D003900 ORTHO05D005009 1.4e-27 129.0 351 31.9
CAN.G853.45 Capsicum annuum HOM05D003900 ORTHO05D005009 1.2e-26 125.9 154 46.1
MELO3C029134.2 Cucumis melo HOM05D003900 ORTHO05D005009 2.7e-26 124.8 215 34.9
ClCG09G009150 Citrullus lanatus HOM05D003900 ORTHO05D005009 4.6e-26 124.0 215 34.0
ECA236G1505 Erigeron canadensis HOM05D003900 ORTHO05D005009 1.0e-25 122.9 208 35.6
FAN10G1060 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.0e-25 122.9 363 31.4
CDE10G0308 Ceratophyllum demersum HOM05D003834 ORTHO05D004483 3.3e-24 117.9 232 31.9
Oeu015216.1 Olea europaea HOM05D003900 ORTHO05D005009 4.7e-23 114.0 189 38.1
Psat7g005640 Pisum sativum HOM05D003900 ORTHO05D005009 1.8e-22 112.1 196 35.2
Sed0017189 Sechium edule HOM05D003900 ORTHO05D005009 5.2e-22 110.5 207 32.9
TPR.G2949 Trifolium pratense HOM05D003900 ORTHO05D005009 8.9e-22 109.8 196 34.7
Medtr8g098755 Medicago truncatula HOM05D003900 ORTHO05D005009 2.0e-21 108.6 191 35.6
PSO266G0010 Papaver somniferum HOM05D003900 ORTHO05D005009 1.4e-19 102.4 248 25.8
Ca_17228_v3 Cicer arietinum L. HOM05D000113 ORTHO05D005009 3.5e-18 97.8 151 37.1
FAN18G4460 Fragaria x ananassa HOM05D003900 ORTHO05D005009 6.0e-18 97.1 175 33.1
MBI11_g19576_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 7.8e-18 96.7 255 30.6
RcHm_v2.0_Chr5g0017031 Rosa chinensis HOM05D003900 ORTHO05D005009 1.3e-17 95.9 152 37.5
CAN.G430.2 Capsicum annuum HOM05D003900 ORTHO05D005009 3.9e-17 94.4 121 46.3
CAN.G609.3 Capsicum annuum HOM05D003900 ORTHO05D005009 5.1e-17 94.0 213 32.9
PSO384G0446 Papaver somniferum HOM05D003900 ORTHO05D005009 1.1e-16 92.8 206 27.2
VMungo0251G0997 Vigna mungo HOM05D003900 ORTHO05D005009 1.9e-16 92.0 136 37.5
CAN.G1005.1 Capsicum annuum HOM05D003900 ORTHO05D005009 2.5e-16 91.7 110 47.3
HPP92_011504 Vanilla planifolia HOM05D003900 ORTHO05D005009 1.6e-15 89.0 299 28.8
ATR0721G158 Amborella trichopoda HOM05D003900 ORTHO05D005009 2.4e-14 85.1 235 29.8
CAN.G460.4 Capsicum annuum HOM05D003900 ORTHO05D005009 7.6e-13 80.1 108 41.7
CAN.G874.71 Capsicum annuum HOM05D003900 ORTHO05D005009 3.2e-11 74.7 93 45.2
RcHm_v2.0_Chr7g0228281 Rosa chinensis HOM05D003900 ORTHO05D005009 1.6e-07 62.4 136 36.0
RcHm_v2.0_Chr7g0228291 Rosa chinensis HOM05D003900 ORTHO05D005009 3.6e-07 61.2 111 58.6
CAN.G1005.2 Capsicum annuum HOM05D003900 ORTHO05D005009 4.8e-07 60.8 43 60.5
Gohir.D08G158800 Gossypium hirsutum HOM05D000104 ORTHO05D008354 1.8e-06 58.9 310 23.9
Medtr3g088810 Medicago truncatula HOM05D003900 ORTHO05D005009 2.4e-06 58.5 38 63.2
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 4.0e-06 57.8 226 23.0
FAN18G1403 Fragaria x ananassa HOM05D003900 ORTHO05D005009 5.3e-06 57.4 52 50.0
TPR.G4127 Trifolium pratense HOM05D007202 ORTHO05D009125 5.3e-06 57.4 285 23.9


User provided reference genes

Program Settings