Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10019009m.g Citrus clementina HOM05D006063 ORTHO05D000023 0.0e+00 1443.3 739 100.0
Thecc.05G261400 Theobroma cacao HOM05D006063 ORTHO05D000023 1.7e-172 610.5 766 51.4
Gorai.013G118800 Gossypium raimondii HOM05D006063 ORTHO05D000023 4.6e-154 549.3 769 46.2
Gohir.D13G106000 Gossypium hirsutum HOM05D006063 ORTHO05D000023 3.0e-153 546.6 769 46.0
Potri.019G029400 Populus trichocarpa HOM05D006063 ORTHO05D000023 6.6e-153 545.4 734 48.1
TWI34G0066 Tripterygium wilfordii HOM05D006063 ORTHO05D000023 4.3e-152 542.7 752 47.6
Sabra19G0039200 Salix brachista HOM05D006063 ORTHO05D000023 1.8e-150 537.3 728 47.7
Sabra19G0036100 Salix brachista HOM05D006063 ORTHO05D000023 2.0e-149 533.9 730 47.5
Manes.09G145100 Manihot esculenta HOM05D006063 ORTHO05D000023 4.4e-149 532.7 765 44.8
CANSAT54G1152 Cannabis sativa HOM05D006063 ORTHO05D000023 4.9e-140 502.7 753 45.8
Cpa.g.sc51.61 Carica papaya HOM05D006063 ORTHO05D000023 2.4e-139 500.4 546 53.7
FAN09G4822 Fragaria x ananassa HOM05D006063 ORTHO05D000023 4.2e-139 499.6 761 43.9
TAR362G1155 Trochodendron aralioides HOM05D006063 ORTHO05D000023 9.3e-139 498.4 786 44.5
FAN05G0856 Fragaria x ananassa HOM05D006063 ORTHO05D000023 1.6e-135 487.6 763 43.6
FAN02G3689 Fragaria x ananassa HOM05D006063 ORTHO05D000023 6.2e-135 485.7 760 43.6
FvH4_6g01260 Fragaria vesca HOM05D006063 ORTHO05D000023 1.1e-134 485.0 757 43.5
MD04G1235500 Malus domestica HOM05D006063 ORTHO05D000023 4.0e-134 483.0 761 43.2
Prupe.6G355400 Prunus persica HOM05D006063 ORTHO05D000023 4.4e-133 479.6 714 45.1
Atru.chr2.1232 Acer truncatum HOM05D006063 ORTHO05D000023 4.9e-132 476.1 358 66.8
MELO3C010119.2 Cucumis melo HOM05D006063 ORTHO05D000023 4.8e-127 459.5 754 42.6
CSS0004581 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 9.0e-126 455.3 757 41.9
ClCG03G011330 Citrullus lanatus HOM05D006063 ORTHO05D000023 2.0e-125 454.1 842 40.5
Rhsim09G0137100 Rhododendron simsii HOM05D006063 ORTHO05D000023 5.8e-125 452.6 756 41.7
Aqoxy2G04022 Aquilegia oxysepala HOM05D006063 ORTHO05D000023 6.4e-124 449.1 747 41.1
CsaV3_1G044890 Cucumis sativus L. HOM05D006063 ORTHO05D000023 1.9e-123 447.6 730 43.2
vmacro10365 Vaccinium macrocarpon HOM05D006063 ORTHO05D000023 1.6e-122 444.5 742 42.5
Sed0026121 Sechium edule HOM05D006063 ORTHO05D000023 3.5e-122 443.4 769 41.0
Actinidia34754 Actinidia chinensis HOM05D006063 ORTHO05D000023 3.3e-120 436.8 693 42.9
CARHR078300 Cardamine hirsuta HOM05D006063 ORTHO05D000023 2.6e-117 427.2 712 41.9
THA.LOC104820746 Tarenaya hassleriana HOM05D006063 ORTHO05D000023 2.6e-117 427.2 716 40.9
Hund07147 Selenicereus undatus HOM05D006063 ORTHO05D000023 3.4e-117 426.8 781 39.9
Carub.0003s0342 Capsella rubella HOM05D006063 ORTHO05D000023 5.5e-115 419.5 648 43.7
Thhalv10020148m.g Eutrema salsugineum HOM05D006063 ORTHO05D000023 1.3e-113 414.8 644 44.6
AT3G04160 Arabidopsis thaliana HOM05D006063 ORTHO05D000023 5.1e-113 412.9 750 41.7
Sp3g03130 Schrenkiella parvula HOM05D006063 ORTHO05D000023 1.1e-112 411.8 725 42.1
Eucgr.H04160 Eucalyptus grandis HOM05D006063 ORTHO05D000023 4.3e-112 409.8 675 42.7
Sc16g0010060 Simmondsia chinensis HOM05D006063 ORTHO05D000023 2.1e-111 407.5 766 40.1
Aa31LG5G14700 Aethionema arabicum HOM05D006063 ORTHO05D000023 1.1e-110 405.2 748 41.4
FAN05G5389 Fragaria x ananassa HOM05D006063 ORTHO05D000023 3.1e-110 403.7 558 46.6
Nitab4.5_0000504g0070 Nicotiana tabacum HOM05D006063 ORTHO05D000023 9.0e-110 402.1 729 40.9
AL3G14090 Arabidopsis lyrata HOM05D006063 ORTHO05D000023 7.6e-109 399.1 638 43.9
EL10Ac4g09796 Beta vulgaris HOM05D006063 ORTHO05D000023 9.3e-107 392.1 795 38.9
Lalb_Chr21g0311331 Lupinus albus HOM05D006063 ORTHO05D000023 1.6e-106 391.3 715 40.4
PGSC0003DMG400015112 Solanum tuberosum HOM05D006063 ORTHO05D000023 5.1e-105 386.3 724 39.6
Nitab4.5_0004201g0010 Nicotiana tabacum HOM05D006063 ORTHO05D000023 1.9e-104 384.4 726 40.2
Glyma.10G169000 Glycine max HOM05D006063 ORTHO05D000023 8.2e-103 379.0 737 39.5
CAN.G4.18 Capsicum annuum HOM05D006063 ORTHO05D000023 1.8e-102 377.9 727 39.6
Cc09_g03150 Coffea canephora HOM05D006063 ORTHO05D000023 1.8e-102 377.9 629 40.5
PSO017G2613 Papaver somniferum HOM05D006063 ORTHO05D000023 1.8e-102 377.9 694 41.1
Solyc04g050760.4 Solanum lycopersicum HOM05D006063 ORTHO05D000023 1.8e-102 377.9 720 39.2
Sopen04g021710 Solanum pennellii HOM05D006063 ORTHO05D000023 4.1e-102 376.7 714 39.4
PSO063G1700 Papaver somniferum HOM05D006063 ORTHO05D000023 5.3e-102 376.3 717 38.9
Phvul.L001648 Phaseolus vulgaris HOM05D006063 ORTHO05D000023 5.3e-102 376.3 734 39.1
A03p33520 Brassica napus HOM05D006063 ORTHO05D000023 1.2e-101 375.2 538 45.9
VMungo0720G1344 Vigna mungo HOM05D006063 ORTHO05D000023 5.9e-101 372.9 733 38.9
BcaC01g04385 Brassica carinata HOM05D006063 ORTHO05D000023 7.7e-101 372.5 554 44.9
BcaB04g19349 Brassica carinata HOM05D006063 ORTHO05D000023 1.3e-100 371.7 740 38.8
BolC3t16339H Brassica oleracea HOM05D006063 ORTHO05D000023 1.7e-100 371.3 520 45.8
MSTRG.9222 Avicennia marina HOM05D006063 ORTHO05D000023 2.5e-99 367.5 680 39.4
C03p40730 Brassica napus HOM05D006063 ORTHO05D000023 7.9e-98 362.5 739 38.2
BraA03t12527Z Brassica rapa HOM05D006063 ORTHO05D000023 7.9e-98 362.5 540 45.2
Gohir.A13G102800 Gossypium hirsutum HOM05D006063 ORTHO05D000023 1.0e-97 362.1 524 45.2
arahy.Tifrunner.gnm1.ann1.JVQ2Z4 Arachis hypogaea HOM05D006063 ORTHO05D000023 8.8e-97 359.0 746 36.5
Migut.F02045 Erythranthe guttata HOM05D006063 ORTHO05D000023 1.1e-96 358.6 725 37.7
Oeu010183.1 Olea europaea HOM05D006063 ORTHO05D000023 1.1e-96 358.6 583 42.7
AUR62005299 Chenopodium quinoa HOM05D006063 ORTHO05D000765 1.5e-96 358.2 665 38.6
Lj3g0014127 Lotus japonicus HOM05D006063 ORTHO05D000023 4.3e-96 356.7 716 37.7
Lsat_1_v5_gn_9_46040 Lactuca sativa HOM05D006063 ORTHO05D000023 5.7e-96 356.3 755 37.4
arahy.Tifrunner.gnm1.ann1.2N7XA4 Arachis hypogaea HOM05D006063 ORTHO05D000023 2.8e-95 354.0 745 36.5
Peaxi162Scf00071g01413 Petunia axillaris HOM05D006063 ORTHO05D000023 8.2e-95 352.4 730 37.7
SalBow1G3325 Salvia bowleyana HOM05D006063 ORTHO05D000023 3.4e-93 347.1 577 41.4
Ca_09979_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 1.0e-92 345.5 720 36.0
Ca_09995_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 1.3e-92 345.1 730 35.9
SalBow1G1068 Salvia bowleyana HOM05D006063 ORTHO05D000023 2.2e-92 344.4 679 39.0
SHI14775 Sapria himalayana HOM05D006063 ORTHO05D000023 5.0e-92 343.2 535 42.8
MBI07_g04744_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 7.2e-91 339.3 756 36.6
Medtr1g079470 Medicago truncatula HOM05D006063 ORTHO05D000023 1.2e-90 338.6 715 35.9
ATR0618G015 Amborella trichopoda HOM05D006063 ORTHO05D000023 6.7e-89 332.8 796 36.6
CiPaw.07G075500 Carya illinoinensis HOM05D006063 ORTHO05D000023 7.4e-88 329.3 532 46.4
SGA_v2.0_scaffold62G21476 Striga asiatica HOM05D006063 ORTHO05D000023 1.7e-87 328.2 642 38.5
CSS0046279 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 2.8e-87 327.4 528 42.6
HanXRQChr15g0491401 Helianthus annuus HOM05D006063 ORTHO05D000023 9.1e-86 322.4 706 35.6
Dinv03784 Davidia involucrata HOM05D006063 ORTHO05D000023 9.4e-83 312.4 464 44.4
QL07p027196 Quercus lobata HOM05D006063 ORTHO05D000023 8.0e-82 309.3 864 34.5
RcHm_v2.0_Chr3g0448821 Rosa chinensis HOM05D006063 ORTHO05D000023 6.7e-81 306.2 393 48.6
Lj2A50T27 Lonicera japonica HOM05D006063 ORTHO05D000023 1.5e-80 305.1 400 45.0
Haze_04487 Corylus avellana HOM05D006063 ORTHO05D000023 2.0e-80 304.7 714 37.7
Hma1.2p1_0153F.1_g067880 Hydrangea macrophylla HOM05D006063 ORTHO05D000023 1.8e-73 281.6 456 44.1
MBI18_g19284_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 8.8e-73 279.3 481 41.6
COL.COLO4_20542 Corchorus olitorius HOM05D006063 ORTHO05D000023 2.8e-63 247.7 389 43.7
Atru.chr2.1231 Acer truncatum HOM05D006063 ORTHO05D000023 3.7e-55 220.7 183 66.1
FvH4_5g38930 Fragaria vesca HOM05D006063 ORTHO05D000023 3.7e-55 220.7 302 49.0
ECA232G4499 Erigeron canadensis HOM05D006063 ORTHO05D000023 4.9e-55 220.3 458 37.3
MBI18_g46979_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 8.3e-55 219.5 553 35.4
A05p43190 Brassica napus HOM05D006063 ORTHO05D000023 4.1e-54 217.2 305 44.3
Psat6g141160 Pisum sativum HOM05D006063 ORTHO05D000023 3.0e-52 211.1 392 39.3
Zm00001eb086400 Zea mays HOM05D006063 ORTHO05D000023 8.6e-52 209.5 516 34.1
GSVIVG01026370001 Vitis vinifera HOM05D006063 ORTHO05D000023 8.9e-49 199.5 346 42.5
AagrBONN_evm.TU.Sc2ySwM_362.520 Anthoceros agrestis HOM05D006063 ORTHO05D000023 4.9e-47 193.7 585 29.9
SMO351G0027 Selaginella moellendorffii HOM05D006063 ORTHO05D000023 3.2e-46 191.0 590 32.0
Pp3c17_4760 Physcomitrium patens HOM05D006063 ORTHO05D000023 3.5e-45 187.6 623 29.9
Os04g0349401 Oryza sativa ssp. japonica HOM05D006063 ORTHO05D000023 4.6e-45 187.2 442 34.8
TPR.G10281 Trifolium pratense HOM05D006063 ORTHO05D000023 8.6e-44 183.0 364 35.4
Mapoly0001s0430 Marchantia polymorpha HOM05D006063 ORTHO05D000023 4.4e-40 170.6 802 27.2
HPP92_006233 Vanilla planifolia HOM05D006063 ORTHO05D000023 3.2e-38 164.5 427 34.4
CDE05G3203 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 5.8e-32 143.7 335 35.5
CDE05G2869 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 2.4e-30 138.3 288 37.2
A05p43200 Brassica napus HOM05D000005 ORTHO05D000449 1.2e-29 136.0 269 40.1
Cpa.g.sc51.65 Carica papaya HOM05D006063 ORTHO05D000023 7.3e-27 126.7 322 32.0
HPP92_006232 Vanilla planifolia HOM05D006063 ORTHO05D000023 7.3e-27 126.7 272 35.3
CsaV3_1G044530 Cucumis sativus L. HOM05D006063 ORTHO05D000023 4.7e-26 124.0 134 56.0
BraA05t23062Z Brassica rapa HOM05D006063 ORTHO05D000023 2.0e-24 118.6 80 76.2
DCAR_005531 Daucus carota HOM05D006063 ORTHO05D000023 3.4e-24 117.9 302 30.1
SEGI_40887 Sequoiadendron giganteum HOM05D006063 ORTHO05D000023 2.1e-21 108.6 282 36.2
FAN08G2149 Fragaria x ananassa HOM05D006063 ORTHO05D000023 1.7e-15 89.0 223 37.7
TPR.G14651 Trifolium pratense HOM05D006063 ORTHO05D000023 3.8e-15 87.8 235 30.2
C05p62930 Brassica napus HOM05D000005 ORTHO05D000294 1.0e-12 79.7 161 34.8
Hma1.2p1_0153F.1_g067860 Hydrangea macrophylla HOM05D006063 ORTHO05D045100 1.8e-12 79.0 221 33.5
Cpa.g.sc51.64 Carica papaya HOM05D006063 ORTHO05D000023 2.3e-12 78.6 85 55.3
RcHm_v2.0_Chr3g0448831 Rosa chinensis HOM05D006063 ORTHO05D000023 3.0e-12 78.2 164 35.4
BcaC05g30213 Brassica carinata HOM05D006063 ORTHO05D000023 1.4e-09 69.3 48 77.1
C05p62940 Brassica napus HOM05D000005 ORTHO05D000449 1.2e-08 66.2 128 42.2
Dinv03778 Davidia involucrata HOM05D006063 ORTHO05D045100 2.0e-08 65.5 256 28.9
FAN04G1450 Fragaria x ananassa HOM05D006063 ORTHO05D000023 2.6e-08 65.1 46 71.7
MBI18_g46978_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 9.9e-08 63.2 174 31.0
CBR_g8884 Chara braunii HOM05D006063 ORTHO05D000023 8.4e-07 60.1 52 53.8
DCAR_005530 Daucus carota HOM05D006063 ORTHO05D000023 8.4e-07 60.1 238 31.1
Dinv03782 Davidia involucrata HOM05D006063 ORTHO05D045148 3.2e-06 58.2 40 72.5


User provided reference genes

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