Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 0.0e+00 1729.9 858 100.0
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 0.0e+00 1100.9 862 65.0
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 0.0e+00 1091.6 911 61.5
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 7.6e-310 1067.0 918 59.2
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 1.3e-306 1056.2 925 58.6
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 2.9e-301 1038.5 905 59.4
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 1.4e-300 1036.2 912 59.6
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 3.5e-299 1031.6 903 59.1
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 1.9e-297 1025.8 903 59.0
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 2.8e-296 1021.9 924 57.4
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 6.7e-290 1000.7 931 56.9
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 8.1e-288 993.8 931 56.1
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 1.2e-286 989.9 864 59.3
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 1.1e-284 983.4 865 59.0
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 1.5e-278 963.0 861 57.6
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 1.2e-275 953.4 889 56.6
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 1.6e-275 953.0 896 55.7
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 2.6e-270 935.6 1118 46.4
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 1.0e-269 933.7 900 54.9
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 6.5e-269 931.0 900 54.9
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 2.5e-268 929.1 900 54.8
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 1.5e-265 919.8 792 61.0
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 1.0e-261 907.1 867 56.6
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 7.2e-260 901.0 1115 45.2
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 1.7e-256 889.8 1122 45.3
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 5.3e-255 884.8 854 54.1
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 6.7e-250 867.8 859 52.7
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 2.6e-249 865.9 861 54.4
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 4.4e-249 865.1 879 54.3
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 7.5e-249 864.4 858 53.0
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 9.7e-249 864.0 900 49.9
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 8.2e-248 860.9 856 54.4
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 8.2e-248 860.9 926 48.6
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 1.4e-247 860.1 1126 44.1
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 1.2e-246 857.1 858 51.6
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 2.0e-246 856.3 883 54.0
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 2.7e-246 855.9 894 50.2
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 5.9e-246 854.7 881 49.1
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 5.5e-244 848.2 911 49.7
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 9.4e-244 847.4 868 51.7
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 1.2e-243 847.0 899 49.5
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 2.1e-243 846.3 912 49.9
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 2.7e-243 845.9 896 50.3
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 4.7e-243 845.1 910 50.1
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 8.0e-243 844.3 877 51.1
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 1.0e-242 844.0 861 52.3
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 1.0e-242 844.0 885 50.6
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 1.8e-242 843.2 917 49.6
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 1.8e-242 843.2 914 49.3
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 4.0e-242 842.0 914 49.3
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 1.2e-241 840.5 910 49.6
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 3.4e-241 839.0 1105 42.8
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 5.7e-241 838.2 914 49.5
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 6.3e-240 834.7 883 51.0
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 1.4e-239 833.6 847 52.3
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 1.3e-237 827.0 919 48.0
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 1.2e-235 820.5 913 47.2
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 8.3e-232 807.7 899 47.4
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 1.8e-231 806.6 891 48.4
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 2.4e-231 806.2 936 46.4
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 7.3e-228 794.7 910 48.1
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 8.3e-224 781.2 1105 41.4
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 3.2e-223 779.2 880 48.1
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 7.0e-223 778.1 859 48.3
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 7.8e-222 774.6 877 47.9
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 2.3e-218 763.1 893 47.4
Gohir.A08G104400 Gossypium hirsutum HOM05D005399 ORTHO05D006347 3.7e-216 755.7 654 59.3
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 4.9e-216 755.4 893 46.7
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 8.3e-216 754.6 862 47.8
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 4.1e-215 752.3 860 49.3
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 1.2e-214 750.7 637 60.1
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 2.0e-214 750.0 877 47.9
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 6.2e-211 738.4 925 45.6
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 1.8e-210 736.9 766 52.3
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 9.8e-209 731.1 861 47.7
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 3.2e-207 726.1 1094 39.8
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 4.4e-201 705.7 816 48.2
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 5.8e-201 705.3 788 48.0
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 7.1e-199 698.4 1066 40.1
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 2.8e-195 686.4 914 44.4
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 6.2e-195 685.3 818 46.9
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 8.9e-194 681.4 1088 39.7
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 5.8e-193 678.7 766 48.3
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 2.8e-187 659.8 850 44.8
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 1.8e-186 657.1 782 46.4
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 2.1e-182 643.7 1069 38.4
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 1.8e-178 630.6 764 45.9
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 1.2e-174 617.8 498 62.0
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 1.4e-170 604.4 1037 36.5
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 1.8e-170 604.0 980 38.4
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 7.6e-169 598.6 711 47.7
AUR62006012 Chenopodium quinoa HOM05D005399 ORTHO05D006347 2.9e-168 596.7 707 46.5
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 2.2e-160 570.5 961 36.5
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 9.7e-156 555.1 863 38.4
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 2.8e-155 553.5 503 56.1
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 1.4e-146 524.6 545 51.4
Ah.09g232770 Amaranthus hybridus HOM05D005399 ORTHO05D006347 6.1e-142 509.2 641 44.8
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 1.0e-141 508.4 564 47.5
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 1.7e-131 474.6 966 32.2
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 2.8e-131 473.8 515 51.3
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 3.5e-129 466.8 961 33.3
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 4.0e-125 453.4 489 48.9
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 1.6e-113 414.8 726 35.7
Zm00001eb062490 Zea mays HOM05D005399 ORTHO05D006347 2.7e-113 414.1 600 39.0
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 5.6e-111 406.4 770 34.9
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 7.0e-106 389.4 968 31.2
Eucgr.H04749 Eucalyptus grandis HOM05D005399 ORTHO05D006347 1.5e-100 371.7 391 50.9
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 4.1e-98 363.6 1209 26.1
Peaxi162Scf00526g00518 Petunia axillaris HOM05D005399 ORTHO05D006347 1.7e-96 358.2 388 46.1
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 3.3e-87 327.4 474 41.1
SHI24245 Sapria himalayana HOM05D005399 ORTHO05D006347 3.1e-85 320.9 375 46.9
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 5.6e-79 300.1 675 34.7
CSS0044981 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 1.8e-77 295.0 269 57.6
BcaC09g49949 Brassica carinata HOM05D005399 ORTHO05D006347 3.9e-72 277.3 309 49.5
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 2.2e-67 261.5 950 25.6
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 9.3e-66 256.1 612 31.5
SHI24147 Sapria himalayana HOM05D005399 ORTHO05D006347 1.2e-65 255.8 377 40.1
Gohir.A08G105050 Gossypium hirsutum HOM05D005399 ORTHO05D006347 6.7e-64 250.0 156 75.0
Dinv29217 Davidia involucrata HOM05D005399 ORTHO05D006347 7.4e-63 246.5 159 71.1
Dinv07613 Davidia involucrata HOM05D005399 ORTHO05D006347 3.7e-62 244.2 159 69.8
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 2.1e-57 228.4 158 67.7
BcaB05g23117 Brassica carinata HOM05D005399 ORTHO05D006347 6.2e-54 216.9 191 54.5
SEGI_05702 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 4.0e-53 214.2 268 43.7
Peaxi162Scf00526g00516 Petunia axillaris HOM05D005399 ORTHO05D006347 3.0e-48 198.0 166 56.0
Solyc06g073690.2 Solanum lycopersicum HOM05D005399 ORTHO05D006347 6.7e-48 196.8 157 58.6
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 3.1e-37 161.4 759 24.2
HPP92_021257 Vanilla planifolia HOM05D005399 ORTHO05D006347 5.3e-37 160.6 347 32.0
BcaC09g49950 Brassica carinata HOM05D005399 ORTHO05D006347 1.1e-34 152.9 109 65.1
Psat6g243120 Pisum sativum HOM05D005399 ORTHO05D006347 1.9e-26 125.6 195 37.9
MD10G1005800 Malus domestica HOM05D005399 ORTHO05D006347 1.6e-25 122.5 88 62.5
SHI24234 Sapria himalayana HOM05D005399 ORTHO05D006347 1.6e-25 122.5 133 52.6
MBI17_g18936_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 8.2e-22 110.2 142 40.8
SEGI_00776 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 1.0e-19 103.2 122 43.4
Medtr1g085950 Medicago truncatula HOM05D005399 ORTHO05D006347 4.7e-17 94.4 85 57.6
MCO09G305 Micromonas commoda HOM05D005399 ORTHO05D006347 2.4e-13 82.0 154 36.4
MBI17_g10900_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 1.5e-07 62.8 64 48.4
SHI24232 Sapria himalayana HOM05D005399 ORTHO05D006347 4.8e-06 57.8 29 75.9


User provided reference genes

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