Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10018677m.g Citrus clementina HOM05D005971 ORTHO05D007459 0.0e+00 2051.6 1005 100.0
Atru.chr12.2184 Acer truncatum HOM05D005971 ORTHO05D007459 0.0e+00 1383.2 1021 66.9
Potri.001G457550 Populus trichocarpa HOM05D005971 ORTHO05D007459 0.0e+00 1229.5 996 62.2
Dinv19623 Davidia involucrata HOM05D005971 ORTHO05D007459 0.0e+00 1218.8 1016 59.2
QL04p073974 Quercus lobata HOM05D005971 ORTHO05D007459 0.0e+00 1199.9 1050 58.0
Sabra16G0310100 Salix brachista HOM05D005971 ORTHO05D007459 0.0e+00 1199.9 1007 60.7
Cfa019419 Carpinus fangiana HOM05D005971 ORTHO05D007459 0.0e+00 1191.0 984 60.5
RcHm_v2.0_Chr5g0026671 Rosa chinensis HOM05D005971 ORTHO05D007459 0.0e+00 1151.7 1001 57.7
MD05G1219300 Malus domestica HOM05D005971 ORTHO05D007459 0.0e+00 1149.8 1016 57.7
Duzib268G0338 Durio zibethinus HOM05D005971 ORTHO05D007459 0.0e+00 1131.3 1016 58.0
FAN11G3334 Fragaria x ananassa HOM05D005971 ORTHO05D007459 0.0e+00 1130.2 995 56.7
FvH4_3g15860 Fragaria vesca HOM05D005971 ORTHO05D007459 0.0e+00 1129.0 1017 55.9
FAN16G0465 Fragaria x ananassa HOM05D005971 ORTHO05D007459 0.0e+00 1125.2 1017 55.8
TAR626G0017 Trochodendron aralioides HOM05D005971 ORTHO05D007459 0.0e+00 1101.3 1013 55.8
CSS0033662 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 0.0e+00 1099.0 979 57.4
TWI39G0032 Tripterygium wilfordii HOM05D005971 ORTHO05D007459 0.0e+00 1092.4 1019 56.5
Gorai.013G178300 Gossypium raimondii HOM05D005971 ORTHO05D007459 0.0e+00 1085.1 1012 55.5
CANSAT80G2256 Cannabis sativa HOM05D005971 ORTHO05D007459 0.0e+00 1080.5 1005 54.1
CSS0049989 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 0.0e+00 1075.1 979 56.5
Actinidia35435 Actinidia chinensis HOM05D005971 ORTHO05D007459 1.4e-311 1073.2 1019 54.8
Lj1C905G3 Lonicera japonica HOM05D005971 ORTHO05D007459 3.0e-305 1052.0 1000 53.1
Atru.chr12.2179 Acer truncatum HOM05D005971 ORTHO05D007459 3.6e-295 1018.5 750 66.4
ClCG11G016380 Citrullus lanatus HOM05D005971 ORTHO05D007459 4.4e-293 1011.5 1013 51.6
Medtr2g069560 Medicago truncatula HOM05D005971 ORTHO05D007459 5.8e-293 1011.1 1007 50.5
Migut.M01561 Erythranthe guttata HOM05D005971 ORTHO05D007459 3.0e-289 998.8 1016 49.9
TPR.G9756 Trifolium pratense HOM05D005971 ORTHO05D007459 3.0e-289 998.8 1017 50.1
THA.LOC104822751 Tarenaya hassleriana HOM05D005971 ORTHO05D007459 8.6e-289 997.3 998 51.2
Sopen10g001570 Solanum pennellii HOM05D005971 ORTHO05D007459 2.5e-288 995.7 997 50.8
Cc05_g16010 Coffea canephora HOM05D005971 ORTHO05D007459 3.3e-288 995.3 1000 52.2
PGR031G0315 Punica granatum HOM05D005971 ORTHO05D007459 7.3e-288 994.2 1017 50.8
Lalb_Chr25g0285011 Lupinus albus HOM05D005971 ORTHO05D007459 1.2e-287 993.4 1003 50.2
Glyma.15G255000 Glycine max HOM05D005971 ORTHO05D007459 2.8e-287 992.3 1016 49.6
Lj3g0007743 Lotus japonicus HOM05D005971 ORTHO05D007459 2.8e-287 992.3 1000 49.9
Manes.14G015836 Manihot esculenta HOM05D005971 ORTHO05D007459 1.8e-286 989.6 837 57.7
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 5.2e-286 988.0 1014 50.4
Psat1g011400 Pisum sativum HOM05D005971 ORTHO05D007459 6.8e-286 987.6 1006 49.8
Prupe.4G140600 Prunus persica HOM05D005971 ORTHO05D007459 4.4e-285 984.9 897 56.6
Ca_03684_v3 Cicer arietinum L. HOM05D005971 ORTHO05D007459 3.8e-284 981.9 994 50.4
Carub.0001s0356 Capsella rubella HOM05D005971 ORTHO05D007459 8.4e-284 980.7 1005 50.0
Phvul.005G056400 Phaseolus vulgaris HOM05D005971 ORTHO05D007459 3.2e-283 978.8 1010 48.5
CAN.G492.69 Capsicum annuum HOM05D005971 ORTHO05D007459 4.1e-283 978.4 1012 49.9
arahy.Tifrunner.gnm1.ann1.MUD8D6 Arachis hypogaea HOM05D005971 ORTHO05D007459 7.1e-283 977.6 1004 50.1
Aa31LG1G20480 Aethionema arabicum HOM05D005971 ORTHO05D007459 4.6e-282 974.9 1002 49.8
Peaxi162Scf00267g01016 Petunia axillaris HOM05D005971 ORTHO05D007459 2.3e-281 972.6 998 49.6
AL1G14000 Arabidopsis lyrata HOM05D005971 ORTHO05D007459 9.6e-280 967.2 1001 49.3
AT1G04390 Arabidopsis thaliana HOM05D005971 ORTHO05D007459 1.2e-279 966.8 1002 49.9
Oeu052011.1 Olea europaea HOM05D005971 ORTHO05D007459 1.4e-278 963.4 1013 49.4
Nitab4.5_0000611g0060 Nicotiana tabacum HOM05D005971 ORTHO05D007459 6.0e-274 948.0 978 50.1
PSO675G3107 Papaver somniferum HOM05D005971 ORTHO05D007459 3.1e-270 935.6 1005 48.1
C05p02580 Brassica napus HOM05D005971 ORTHO05D007459 1.7e-268 929.9 1004 48.5
BolC5t29039H Brassica oleracea HOM05D005971 ORTHO05D007459 2.2e-268 929.5 1004 48.3
PSO017G5934 Papaver somniferum HOM05D005971 ORTHO05D007459 2.9e-268 929.1 1005 47.9
A10p02830 Brassica napus HOM05D005971 ORTHO05D007459 6.0e-266 921.4 1003 48.0
Thecc.07G154200 Theobroma cacao HOM05D005971 ORTHO05D007459 5.3e-262 908.3 819 57.6
SGA_v2.0_scaffold7G03577 Striga asiatica HOM05D005971 ORTHO05D007459 8.4e-260 901.0 1018 47.5
vmacro09786 Vaccinium macrocarpon HOM05D005971 ORTHO05D007459 3.2e-259 899.0 995 48.2
Solyc10g005600.4 Solanum lycopersicum HOM05D005971 ORTHO05D007459 1.3e-257 893.6 995 47.4
Aqoxy2G04113 Aquilegia oxysepala HOM05D005971 ORTHO05D007459 2.5e-256 889.4 1013 45.2
Nitab4.5_0004488g0030 Nicotiana tabacum HOM05D005971 ORTHO05D007459 2.8e-255 885.9 997 46.6
Sed0013026 Sechium edule HOM05D005971 ORTHO05D007459 1.5e-253 880.2 924 49.4
GSVIVG01020430001 Vitis vinifera HOM05D005971 ORTHO05D007459 5.8e-253 878.2 928 49.5
Ah.06g185720 Amaranthus hybridus HOM05D005971 ORTHO05D007459 1.9e-251 873.2 1023 45.0
SalBow8G3201 Salvia bowleyana HOM05D005971 ORTHO05D007459 1.6e-250 870.2 1010 45.5
EL10Ac2g03354 Beta vulgaris HOM05D005971 ORTHO05D007459 4.6e-250 868.6 1022 45.5
ECA240G1928 Erigeron canadensis HOM05D005971 ORTHO05D007459 1.3e-249 867.1 983 45.9
FAN21G1476 Fragaria x ananassa HOM05D005971 ORTHO05D007459 6.7e-249 864.8 983 47.0
Rhsim04G0005800 Rhododendron simsii HOM05D005971 ORTHO05D007459 8.7e-249 864.4 1122 44.2
Lsat_1_v5_gn_7_71401 Lactuca sativa HOM05D005971 ORTHO05D007459 7.4e-248 861.3 1023 45.8
DCAR_009638 Daucus carota HOM05D005971 ORTHO05D007459 9.7e-248 860.9 963 46.5
HanXRQChr05g0160991 Helianthus annuus HOM05D005971 ORTHO05D007459 2.0e-237 826.6 1008 44.6
GSVIVG01020427001 Vitis vinifera HOM05D005971 ORTHO05D007459 5.3e-230 802.0 922 47.5
BraA10t42550Z Brassica rapa HOM05D005971 ORTHO05D007459 9.1e-222 774.6 1004 43.0
Hund12466 Selenicereus undatus HOM05D005971 ORTHO05D007459 7.2e-219 765.0 882 45.9
Eucgr.F03182 Eucalyptus grandis HOM05D005971 ORTHO05D007459 2.7e-218 763.1 750 51.5
Thhalv10006788m.g Eutrema salsugineum HOM05D005971 ORTHO05D007459 3.0e-217 759.6 1000 42.7
AUR62038398 Chenopodium quinoa HOM05D005971 ORTHO05D007459 3.8e-212 742.7 995 41.9
Nn7g37820 Nelumbo nucifera HOM05D005971 ORTHO05D007459 4.8e-207 725.7 826 47.2
Cpa.g.sc10.37 Carica papaya HOM05D005971 ORTHO05D007459 2.4e-206 723.4 796 48.4
MBI02_g40085_MAGBIO Magnolia biondii HOM05D005971 ORTHO05D007459 3.5e-205 719.5 855 46.2
VMungo1080G0173 Vigna mungo HOM05D005971 ORTHO05D007459 4.7e-202 709.1 851 44.9
Hma1.2p1_0637F.1_g193590 Hydrangea macrophylla HOM05D005971 ORTHO05D007459 9.8e-200 701.4 1077 40.2
Sc06g0001560 Simmondsia chinensis HOM05D005971 ORTHO05D007459 2.2e-199 700.3 742 46.4
MELO3C010564.2 Cucumis melo HOM05D005971 ORTHO05D007459 3.7e-199 699.5 1007 40.2
CARHR003720 Cardamine hirsuta HOM05D005971 ORTHO05D007459 1.2e-192 677.9 730 47.5
Sp1g03210 Schrenkiella parvula HOM05D005971 ORTHO05D007459 4.3e-187 659.4 714 47.1
ATR0165G004 Amborella trichopoda HOM05D005971 ORTHO05D007459 1.7e-167 594.3 1011 35.8
Gohir.D13G157500 Gossypium hirsutum HOM05D005971 ORTHO05D007459 3.8e-167 593.2 580 52.2
PGSC0003DMG402011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 1.7e-159 567.8 576 50.7
Gohir.A13G153066 Gossypium hirsutum HOM05D005971 ORTHO05D007459 4.3e-131 473.4 418 55.0
CDE12G0091 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 2.3e-124 451.1 740 37.0
Gohir.A13G153099 Gossypium hirsutum HOM05D005971 ORTHO05D007459 2.5e-123 447.6 481 54.5
PGSC0003DMG401011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 1.3e-122 445.3 425 52.9
Zm00001eb273960 Zea mays HOM05D005971 ORTHO05D007459 6.3e-122 443.0 892 33.3
FAN25G3291 Fragaria x ananassa HOM05D005971 ORTHO05D007459 5.7e-107 393.3 369 54.7
unitig_26.g10082 Utricularia gibba HOM05D005971 ORTHO05D007459 2.8e-90 337.8 1002 27.3
Mapoly0060s0028 Marchantia polymorpha HOM05D005971 ORTHO05D007459 1.1e-86 325.9 984 28.6
Pp3c6_21780 Physcomitrium patens HOM05D005971 ORTHO05D007459 2.8e-85 321.2 1064 27.1
Atru.chr12.2180 Acer truncatum HOM05D005971 ORTHO05D007459 2.8e-82 311.2 236 65.7
Cpa.g.sc10.38 Carica papaya HOM05D005971 ORTHO05D007459 3.6e-77 294.3 194 69.1
HPP92_026349 Vanilla planifolia HOM05D005971 ORTHO05D007459 3.0e-71 274.6 534 34.1
Peaxi162Scf00095g00013 Petunia axillaris HOM05D005971 ORTHO05D007459 2.8e-69 268.1 255 53.3
CARHR003730 Cardamine hirsuta HOM05D005971 ORTHO05D007459 6.4e-66 256.9 235 57.0
Nn7g37821 Nelumbo nucifera HOM05D005971 ORTHO05D007459 3.0e-63 248.1 196 59.7
HPP92_026348 Vanilla planifolia HOM05D005971 ORTHO05D007459 1.2e-61 242.7 307 40.4
Haze_08564 Corylus avellana HOM05D005971 ORTHO05D000006 4.6e-56 224.2 143 70.6
Peaxi162Scf01123g00008 Petunia axillaris HOM05D005971 ORTHO05D007459 1.3e-55 222.6 235 48.5
Os06g0674800 Oryza sativa ssp. japonica HOM05D005971 ORTHO05D007459 6.6e-55 220.3 411 33.3
Gohir.D13G157600 Gossypium hirsutum HOM05D005971 ORTHO05D007459 2.0e-51 208.8 190 60.0
Peaxi162Scf01123g00003 Petunia axillaris HOM05D005971 ORTHO05D007459 2.9e-50 204.9 439 33.0
arahy.Tifrunner.gnm1.ann1.Q40ZT9 Arachis hypogaea HOM05D005971 ORTHO05D007459 1.3e-47 196.1 187 51.3
GSVIVG01020426001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.1e-46 193.0 182 51.6
VMungo1080G1570 Vigna mungo HOM05D005971 ORTHO05D007459 4.8e-45 187.6 138 56.5
GSVIVG01020425001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.5e-30 139.4 133 51.9
Glyma.13G358366 Glycine max HOM05D005971 ORTHO05D007459 4.3e-30 137.9 146 47.9
C03p00610 Brassica napus HOM05D005971 ORTHO05D040551 9.6e-30 136.7 155 47.7
Glyma.13G098800 Glycine max HOM05D005971 ORTHO05D007459 8.1e-29 133.7 146 47.3
Glyma.08G171633 Glycine max HOM05D005971 ORTHO05D007459 2.6e-27 128.6 77 68.8
COL.COLO4_20820 Corchorus olitorius HOM05D005971 ORTHO05D007459 5.8e-27 127.5 121 53.7
Zm00001eb395680 Zea mays HOM05D005971 ORTHO05D007459 2.7e-24 118.6 258 30.6
BolC3t12626H Brassica oleracea HOM05D005971 ORTHO05D040551 1.5e-19 102.8 155 40.6
Glyma.13G358300 Glycine max HOM05D005971 ORTHO05D007459 2.9e-18 98.6 161 36.6
CDE12G0613 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 8.4e-18 97.1 104 45.2
Sc06g0001570 Simmondsia chinensis HOM05D005971 ORTHO05D007459 1.8e-15 89.4 98 49.0
Glyma.13G052600 Glycine max HOM05D005971 ORTHO05D007459 2.4e-12 79.0 126 36.5
GSVIVG01020432001 Vitis vinifera HOM05D005971 ORTHO05D007459 5.9e-11 74.3 86 46.5
CAN.G1199.4 Capsicum annuum HOM05D002053 ORTHO05D007459 9.4e-09 67.0 47 53.2
Glyma.08G171600 Glycine max HOM05D005971 ORTHO05D007459 9.4e-09 67.0 52 57.7


User provided reference genes

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