Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10018581m.g Citrus clementina HOM05D000087 ORTHO05D005735 0.0e+00 2224.9 1154 100.0
Duzib068G0232 Durio zibethinus HOM05D000087 ORTHO05D005735 0.0e+00 1446.8 1194 64.5
Gorai.004G127300 Gossypium raimondii HOM05D000087 ORTHO05D005735 0.0e+00 1393.6 1196 63.1
Manes.17G015000 Manihot esculenta HOM05D000087 ORTHO05D005735 0.0e+00 1393.6 1170 64.3
Prupe.5G137300 Prunus persica HOM05D000087 ORTHO05D005735 0.0e+00 1392.5 1185 63.3
Thecc.03G213700 Theobroma cacao HOM05D000087 ORTHO05D005735 0.0e+00 1389.8 1193 62.9
GSVIVG01019707001 Vitis vinifera HOM05D000087 ORTHO05D005735 0.0e+00 1388.2 1179 64.0
Gohir.A08G107500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 0.0e+00 1387.5 1196 62.8
RcHm_v2.0_Chr7g0188131 Rosa chinensis HOM05D000087 ORTHO05D005735 0.0e+00 1387.1 1178 63.2
Gohir.D08G120500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 0.0e+00 1371.3 1159 63.8
MD06G1127500 Malus domestica HOM05D000087 ORTHO05D005735 0.0e+00 1369.0 1200 62.5
FvH4_5g10170 Fragaria vesca HOM05D000087 ORTHO05D005735 0.0e+00 1360.1 1178 61.8
FAN04G3195 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1354.7 1176 61.7
TWI81G0850 Tripterygium wilfordii HOM05D000087 ORTHO05D005735 0.0e+00 1349.3 1191 62.0
FAN08G3226 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1333.2 1178 61.0
TAR629G0355 Trochodendron aralioides HOM05D000087 ORTHO05D005735 0.0e+00 1321.2 1209 60.1
FAN18G4270 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1311.6 1178 60.0
Sabra16G0307100 Salix brachista HOM05D000087 ORTHO05D005735 0.0e+00 1310.8 1151 62.1
QL02p026653 Quercus lobata HOM05D000087 ORTHO05D005735 0.0e+00 1309.7 1137 62.5
Dinv11465 Davidia involucrata HOM05D000087 ORTHO05D005735 0.0e+00 1307.4 1196 59.4
Cfa011874 Carpinus fangiana HOM05D000087 ORTHO05D005735 0.0e+00 1286.9 1134 61.5
Lj2C147G10 Lonicera japonica HOM05D000087 ORTHO05D005735 0.0e+00 1238.0 1208 57.9
CANSAT64G2851 Cannabis sativa HOM05D000087 ORTHO05D005735 0.0e+00 1231.1 1183 58.2
CsaV3_5G001350 Cucumis sativus L. HOM05D000087 ORTHO05D005735 0.0e+00 1216.8 1196 55.7
Eucgr.D02539 Eucalyptus grandis HOM05D000087 ORTHO05D005735 0.0e+00 1201.0 1193 56.3
Actinidia22240 Actinidia chinensis HOM05D000087 ORTHO05D005735 0.0e+00 1194.1 1198 55.8
Haze_09232 Corylus avellana HOM05D000087 ORTHO05D005735 0.0e+00 1191.8 1144 58.2
Sed0004639 Sechium edule HOM05D000087 ORTHO05D005735 0.0e+00 1184.1 1195 54.9
ClCG01G001230 Citrullus lanatus HOM05D000087 ORTHO05D005735 0.0e+00 1170.6 1329 51.0
PSO063G0654 Papaver somniferum HOM05D000087 ORTHO05D005735 0.0e+00 1170.2 1212 53.9
Lj6g0001276 Lotus japonicus HOM05D000087 ORTHO05D005735 0.0e+00 1168.3 1185 54.9
Psat5g111000 Pisum sativum HOM05D000087 ORTHO05D005735 0.0e+00 1164.8 1177 54.3
THA.LOC104806594 Tarenaya hassleriana HOM05D000087 ORTHO05D005735 0.0e+00 1147.5 1135 56.7
PSO782G2195 Papaver somniferum HOM05D000087 ORTHO05D005735 0.0e+00 1147.1 1210 53.5
Sp7g37630 Schrenkiella parvula HOM05D000087 ORTHO05D005735 0.0e+00 1142.9 1182 55.0
Carub.0007s0001 Capsella rubella HOM05D000087 ORTHO05D005735 0.0e+00 1137.1 1178 54.0
C01p21480 Brassica napus HOM05D000087 ORTHO05D005735 0.0e+00 1135.2 1166 54.9
BolC1t02068H Brassica oleracea HOM05D000087 ORTHO05D005735 0.0e+00 1135.2 1166 54.9
Lalb_Chr14g0362591 Lupinus albus HOM05D000087 ORTHO05D005735 0.0e+00 1134.4 1195 53.4
AT4G38120 Arabidopsis thaliana HOM05D000087 ORTHO05D005735 0.0e+00 1133.2 1186 53.7
EL10Ac2g03880 Beta vulgaris HOM05D000087 ORTHO05D005735 0.0e+00 1130.5 1186 53.8
Nn3g18737 Nelumbo nucifera HOM05D000087 ORTHO05D005735 0.0e+00 1127.5 1208 52.6
PGR031G2531 Punica granatum HOM05D000087 ORTHO05D005735 0.0e+00 1125.2 1161 54.9
A01p17150 Brassica napus HOM05D000087 ORTHO05D005735 0.0e+00 1124.8 1155 55.0
AL7G10010 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 0.0e+00 1122.1 1184 53.6
BraA01t01671Z Brassica rapa HOM05D000087 ORTHO05D005735 0.0e+00 1120.1 1166 54.5
MELO3C005812.2 Cucumis melo HOM05D000087 ORTHO05D005735 0.0e+00 1105.9 1329 48.9
ECA246G1365 Erigeron canadensis HOM05D000087 ORTHO05D005735 0.0e+00 1088.9 1159 53.1
AUR62039113 Chenopodium quinoa HOM05D000087 ORTHO05D005735 0.0e+00 1084.7 1187 51.5
MSTRG.22476 Avicennia marina HOM05D000087 ORTHO05D005735 7.9e-312 1073.5 1178 51.4
AUR62009145 Chenopodium quinoa HOM05D000087 ORTHO05D005735 1.2e-310 1070.1 1192 51.5
Rhsim02G0255700 Rhododendron simsii HOM05D000087 ORTHO05D005735 3.5e-310 1068.5 1223 50.9
HanXRQChr01g0016041 Helianthus annuus HOM05D000087 ORTHO05D005735 6.0e-310 1067.8 1180 51.7
Medtr3g080640 Medicago truncatula HOM05D000087 ORTHO05D005735 1.3e-309 1066.6 1087 54.6
CiPaw.11G106200 Carya illinoinensis HOM05D000087 ORTHO05D005735 2.3e-309 1065.8 863 66.2
Cc08_g17160 Coffea canephora HOM05D000087 ORTHO05D005735 1.6e-307 1059.7 1201 49.9
Migut.H02249 Erythranthe guttata HOM05D000087 ORTHO05D005735 2.9e-304 1048.9 1189 50.4
Phvul.011G167550 Phaseolus vulgaris HOM05D000087 ORTHO05D005735 5.4e-303 1044.6 1019 55.2
Sc01g0010950 Simmondsia chinensis HOM05D000087 ORTHO05D005735 3.2e-295 1018.8 1138 52.1
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 7.3e-292 1007.7 1325 45.2
Sopen07g004380 Solanum pennellii HOM05D000087 ORTHO05D005735 1.2e-289 1000.3 1084 51.3
Solyc07g008450.3 Solanum lycopersicum HOM05D000087 ORTHO05D005735 2.2e-288 996.1 1084 51.4
ATR0579G142 Amborella trichopoda HOM05D000087 ORTHO05D005735 3.8e-288 995.3 1205 47.0
Hund03336 Selenicereus undatus HOM05D000087 ORTHO05D005735 6.6e-285 984.6 1179 49.6
Lsat_1_v5_gn_3_13301 Lactuca sativa HOM05D000087 ORTHO05D005735 8.7e-285 984.2 1154 49.6
Thhalv10024269m.g Eutrema salsugineum HOM05D000087 ORTHO05D005735 2.5e-284 982.6 1181 49.5
Aa31LG6G16960 Aethionema arabicum HOM05D000087 ORTHO05D005735 5.3e-282 974.9 1156 49.6
MBI04_g04806_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 7.6e-281 971.1 1117 51.8
CAN.G1548.2 Capsicum annuum HOM05D000087 ORTHO05D005735 9.3e-279 964.1 1083 50.0
Peaxi162Scf00046g00228 Petunia axillaris HOM05D000087 ORTHO05D005735 9.6e-276 954.1 1081 50.0
Potri.001G454200 Populus trichocarpa HOM05D000087 ORTHO05D005735 3.9e-269 932.2 832 61.4
arahy.Tifrunner.gnm1.ann1.0XGN9Z Arachis hypogaea HOM05D000087 ORTHO05D005735 9.6e-268 927.5 1223 47.0
Nitab4.5_0007502g0010 Nicotiana tabacum HOM05D000087 ORTHO05D005735 4.5e-265 918.7 1088 49.2
Nitab4.5_0000491g0190 Nicotiana tabacum HOM05D000087 ORTHO05D005735 9.4e-255 884.4 1089 47.8
vmacro08519 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 1.8e-242 843.6 894 54.9
Zm00001eb416210 Zea mays HOM05D000087 ORTHO05D005735 1.8e-242 843.6 1174 43.4
FAN18G0494 Fragaria x ananassa HOM05D000087 ORTHO05D005735 7.7e-241 838.2 998 50.6
arahy.Tifrunner.gnm1.ann1.DH86LW Arachis hypogaea HOM05D000087 ORTHO05D005735 3.2e-231 806.2 1369 40.3
DCAR_010123 Daucus carota HOM05D000087 ORTHO05D005735 8.6e-216 755.0 836 51.9
Atru.chr9.2610 Acer truncatum HOM05D000087 ORTHO05D005735 3.7e-211 739.6 491 78.0
Aqoxy5G04397 Aquilegia oxysepala HOM05D000087 ORTHO05D005735 4.9e-211 739.2 868 49.3
CDE02G0276 Ceratophyllum demersum HOM05D000087 ORTHO05D005735 2.2e-203 713.8 937 45.6
Glyma.06G180700 Glycine max HOM05D000087 ORTHO05D005735 6.6e-200 702.2 651 57.5
Mapoly0043s0141 Marchantia polymorpha HOM05D000087 ORTHO05D005735 3.6e-190 669.8 1041 41.0
Hma1.2p1_0198F.1_g085370 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 8.1e-182 642.1 592 58.4
Pp3c3_37190 Physcomitrium patens HOM05D000087 ORTHO05D005735 2.1e-177 627.5 1125 37.7
SMO367G1062 Selaginella moellendorffii HOM05D000087 ORTHO05D005735 5.3e-173 612.8 1148 36.9
COL.COLO4_10863 Corchorus olitorius HOM05D000087 ORTHO05D005735 6.4e-171 605.9 1140 38.1
Cpa.g.sc37.117 Carica papaya HOM05D000087 ORTHO05D005735 2.4e-165 587.4 605 56.9
VMungo1127G0184 Vigna mungo HOM05D000087 ORTHO05D005735 9.0e-165 585.5 556 56.5
MD14G1143100 Malus domestica HOM05D000087 ORTHO05D005735 2.0e-164 584.3 582 56.9
HPP92_008913 Vanilla planifolia HOM05D000087 ORTHO05D005735 1.6e-150 538.1 670 46.3
HPP92_028198 Vanilla planifolia HOM05D000087 ORTHO05D005735 2.0e-148 531.2 760 41.6
CARHR143600 Cardamine hirsuta HOM05D000087 ORTHO05D005735 2.9e-139 500.7 491 56.6
Ca_16291_v3 Cicer arietinum L. HOM05D000087 ORTHO05D005735 2.5e-138 497.7 591 49.1
Glyma.06G181000 Glycine max HOM05D000087 ORTHO05D005735 1.3e-131 475.3 536 50.7
Os08g0152900 Oryza sativa ssp. japonica HOM05D000087 ORTHO05D005735 4.5e-124 450.3 547 46.8
Oeu019648.1 Olea europaea HOM05D000087 ORTHO05D005735 6.3e-110 403.3 498 48.4
CBR_g3175 Chara braunii HOM05D000087 ORTHO05D005735 1.7e-99 368.6 754 34.2
Duzib084G1107 Durio zibethinus HOM05D000087 ORTHO05D005735 3.0e-91 341.3 450 47.1
SEGI_15816 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 2.5e-90 338.2 365 52.3
MD14G1142900 Malus domestica HOM05D000087 ORTHO05D005735 4.1e-85 320.9 258 67.1
vmacro08520 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 4.7e-81 307.4 410 44.9
AL8G10020 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 2.7e-68 265.0 254 57.5
MCO07G377 Micromonas commoda HOM05D000087 ORTHO05D005735 3.0e-67 261.5 1129 26.0
Duzib084G0823 Durio zibethinus HOM05D000087 ORTHO05D005735 4.4e-63 247.7 171 70.8
Cpa.g.sc363.3 Carica papaya HOM05D000087 ORTHO05D005735 3.5e-60 238.0 169 72.8
CSS0029196 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 4.3e-58 231.1 175 69.7
SalBow4G1355 Salvia bowleyana HOM05D000087 ORTHO05D005735 3.2e-53 214.9 349 39.3
SEGI_26992 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 2.8e-49 201.8 263 44.1
CiPaw.11G106300 Carya illinoinensis HOM05D000087 ORTHO05D005735 3.7e-49 201.4 253 46.6
AUR62009162 Chenopodium quinoa HOM05D000087 ORTHO05D005735 4.0e-48 198.0 577 31.7
MD14G1142800 Malus domestica HOM05D000087 ORTHO05D005735 3.4e-47 194.9 239 46.9
CSS0034403 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.3e-46 193.0 235 50.6
CSS0007327 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 3.8e-46 191.4 243 49.8
FAN13G3301 Fragaria x ananassa HOM05D000087 ORTHO05D005735 2.5e-42 178.7 134 66.4
CARHR293880 Cardamine hirsuta HOM05D000087 ORTHO05D005735 3.9e-35 154.8 123 62.6
HPP92_028197 Vanilla planifolia HOM05D000087 ORTHO05D005735 6.3e-33 147.5 170 50.6
Cre03.g166600 Chlamydomonas reinhardtii HOM05D000087 ORTHO05D005735 9.0e-32 143.7 1141 21.5
CARHR293870 Cardamine hirsuta HOM05D000087 ORTHO05D005735 6.7e-27 127.5 130 55.4
CSS0050207 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 9.7e-26 123.6 90 68.9
Oeu053260.1 Olea europaea HOM05D000087 ORTHO05D010194 3.7e-25 121.7 150 48.7
SEGI_26806 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 4.8e-25 121.3 347 28.0
Duzib084G0615 Durio zibethinus HOM05D000087 ORTHO05D005735 4.1e-24 118.2 94 68.1
Rhsim02G0255800 Rhododendron simsii HOM05D000087 ORTHO05D005735 9.1e-24 117.1 98 61.2
Hma1.2p1_0198F.1_g085360 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 7.7e-23 114.0 90 61.1
CARHR291390 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.4e-21 109.8 91 62.6
MBI04_g04804_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 4.2e-21 108.2 100 55.0
RcHm_v2.0_Chr7g0188121 Rosa chinensis HOM05D000087 ORTHO05D005735 5.5e-21 107.8 71 76.1
VMungo1127G1440 Vigna mungo HOM05D000087 ORTHO05D005735 9.4e-21 107.1 147 43.5
CSS0025060 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.4e-19 103.2 121 47.1
VMungo1080G1218 Vigna mungo HOM05D000087 ORTHO05D005735 8.8e-19 100.5 97 51.5
SEGI_26704 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 1.8e-16 92.8 83 53.0
Medtr3g080660 Medicago truncatula HOM05D000087 ORTHO05D005735 7.0e-16 90.9 101 49.5
MBI04_g07085_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.2e-15 90.1 96 50.0
VMungo0145G0001 Vigna mungo HOM05D000087 ORTHO05D005735 1.5e-15 89.7 97 47.4
MBI04_g39794_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 3.4e-15 88.6 96 50.0
CARHR046160 Cardamine hirsuta HOM05D000087 ORTHO05D005735 2.2e-14 85.9 61 70.5
CSS0033050 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.9e-13 82.8 76 56.6
MBI17_g33112_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.6e-12 79.7 73 52.1
Ah.10g034360 Amaranthus hybridus HOM05D000087 ORTHO05D005735 2.3e-11 75.9 91 46.2
MBI04_g04802_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 2.3e-11 75.9 64 64.1
SalBow1G5284 Salvia bowleyana HOM05D000087 ORTHO05D005735 1.7e-09 69.7 73 56.2
CARHR293860 Cardamine hirsuta HOM05D000087 ORTHO05D005735 3.7e-09 68.6 75 41.3
CARHR293850 Cardamine hirsuta HOM05D000087 ORTHO05D005735 6.3e-09 67.8 81 53.1
MBI04_g04803_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.1e-08 67.0 68 52.9
CARHR291380 Cardamine hirsuta HOM05D000087 ORTHO05D005735 2.4e-08 65.9 64 56.2
CSS0034676 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.2e-07 63.5 91 44.0
CSS0049190 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 4.5e-07 61.6 77 46.8


User provided reference genes

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