Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 2476.0 1254 100.0
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1884.0 1259 76.7
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1869.4 1257 77.2
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1863.2 1254 75.8
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1857.8 1254 75.7
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1857.8 1254 76.1
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1850.9 1263 75.9
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1848.6 1255 75.2
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1847.0 1260 74.8
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1843.9 1260 74.7
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1843.9 1253 75.7
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1842.8 1260 74.6
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1839.3 1253 75.3
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1838.5 1250 75.3
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1832.0 1257 74.9
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1831.6 1260 74.7
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1830.8 1253 74.6
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1825.1 1258 74.6
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1822.8 1280 73.4
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1809.7 1257 74.2
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1809.3 1253 74.1
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1786.5 1320 70.9
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1779.6 1265 71.9
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1778.1 1256 72.1
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1776.9 1260 72.1
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1775.8 1262 72.5
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1775.0 1263 72.2
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1774.6 1265 72.2
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1771.9 1269 72.0
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1765.0 1265 71.3
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1761.5 1264 70.9
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1759.6 1262 71.0
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1757.3 1265 71.0
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1755.3 1261 72.5
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1751.5 1257 71.4
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1750.3 1262 71.1
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1745.3 1256 71.5
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1744.6 1337 68.4
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1743.8 1256 71.5
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1734.2 1252 70.7
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1731.1 1251 71.3
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1730.3 1265 70.1
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1730.3 1252 71.7
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1726.1 1250 70.3
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1723.0 1251 70.5
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1719.9 1265 69.1
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1716.0 1187 74.7
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1716.0 1260 70.0
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1714.5 1253 70.2
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1713.0 1253 70.4
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1709.1 1293 68.4
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1707.2 1251 71.5
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1706.0 1252 71.3
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1697.6 1256 69.8
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1696.8 1183 73.9
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1696.0 1250 70.6
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1694.9 1250 70.1
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1692.9 1252 69.1
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1692.9 1252 68.5
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1692.2 1251 70.6
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1691.8 1250 69.3
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1686.0 1255 68.6
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1681.8 1261 69.2
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1678.7 1257 68.7
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1676.4 1252 68.5
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1675.6 1314 67.1
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1675.2 1303 66.8
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1665.6 1247 67.9
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1664.8 1265 68.9
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1663.7 1226 70.7
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1661.0 1253 69.1
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1656.3 1249 69.7
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1652.1 1308 66.9
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1650.2 1261 67.7
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1645.2 1249 69.1
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1639.8 1179 72.0
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1630.2 1257 68.3
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1626.7 1244 68.6
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1626.7 1244 68.6
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1618.2 1250 68.0
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1615.5 1250 67.8
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1603.6 1297 65.8
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1582.8 1250 67.0
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1572.0 1259 65.1
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1568.9 1205 68.6
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1563.5 1266 65.2
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1562.4 1188 67.8
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1513.0 1023 75.5
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1511.5 1165 67.2
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1503.0 1011 76.0
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1469.9 1247 61.7
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1447.2 1278 60.6
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1437.2 1253 60.2
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1436.8 1257 59.9
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1431.0 1254 61.0
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1305.8 1038 67.1
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1211.8 1255 54.0
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1199.9 886 69.3
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1164.1 1259 49.6
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1149.8 1245 49.1
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 0.0e+00 1139.8 887 68.3
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1128.2 967 60.7
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1120.9 940 64.8
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 1.0e-302 1043.9 794 67.3
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 6.3e-297 1024.6 1199 48.2
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 5.9e-295 1018.1 656 79.6
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 2.0e-287 993.0 814 63.1
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 9.5e-269 931.0 1203 45.3
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 2.4e-224 783.5 536 75.2
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 9.0e-219 765.0 1320 36.8
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 1.0e-193 681.8 618 59.7
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 9.7e-189 665.2 597 59.1
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 7.2e-184 649.0 1400 33.8
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 3.6e-183 646.7 466 70.4
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 1.6e-175 621.3 1220 33.9
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 5.2e-174 616.3 503 64.0
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 4.5e-154 550.1 649 49.0
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 1.8e-134 485.0 1159 31.8
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 9.9e-125 452.6 277 81.2
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 7.1e-123 446.4 339 67.6
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 1.1e-118 432.6 703 42.0
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 7.6e-101 373.2 230 83.5
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.1e-99 369.4 343 57.4
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 6.2e-95 353.6 238 76.9
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 2.6e-93 348.2 266 67.7
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 2.6e-93 348.2 266 67.7
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 1.1e-83 316.2 200 79.0
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 4.1e-78 297.7 238 63.4
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 8.0e-66 256.9 192 68.8
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 2.0e-64 252.3 208 63.0
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 3.4e-56 224.9 161 70.8
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.3e-47 196.4 160 62.5
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 4.7e-42 177.9 104 79.8
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 1.9e-35 156.0 119 68.9
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 2.0e-32 146.0 1208 23.1
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 9.2e-30 137.1 98 69.4
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 3.5e-29 135.2 225 39.6
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 3.5e-29 135.2 120 61.7
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 1.3e-20 106.7 126 45.2
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 1.7e-20 106.3 115 43.5
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 3.9e-20 105.1 153 43.1
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 3.9e-20 105.1 95 53.7
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 5.1e-20 104.8 115 42.6
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 4.7e-18 98.2 152 42.8
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 6.8e-17 94.4 117 48.7
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 6.8e-17 94.4 62 74.2
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 7.6e-16 90.9 92 55.4
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 4.9e-15 88.2 138 38.4
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 2.1e-13 82.8 106 42.5
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 6.0e-13 81.3 117 43.6
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 7.8e-13 80.9 158 37.3
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 1.5e-11 76.6 54 70.4
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 4.7e-10 71.6 246 26.8
Gohir.A02G122601 Gossypium hirsutum HOM05D004478 ORTHO05D016211 4.4e-08 65.1 66 56.1
Gohir.A05G315500 Gossypium hirsutum HOM05D004478 ORTHO05D016211 7.6e-08 64.3 57 59.6
Gohir.A04G047850 Gossypium hirsutum HOM05D004478 ORTHO05D016211 9.9e-08 63.9 59 57.6
AUR62044220 Chenopodium quinoa HOM05D004478 ORTHO05D018907 1.3e-07 63.5 41 73.2
Gohir.A06G146601 Gossypium hirsutum HOM05D000669 ORTHO05D015433 2.2e-07 62.8 57 56.1
GSVIVG01029815001 Vitis vinifera HOM05D004478 ORTHO05D016211 2.2e-07 62.8 33 90.9
Gohir.A06G137902 Gossypium hirsutum HOM05D002560 ORTHO05D016211 2.9e-07 62.4 125 36.8
Gohir.A13G120100 Gossypium hirsutum HOM05D000181 ORTHO05D016211 6.4e-07 61.2 53 58.5
Gohir.A03G068800 Gossypium hirsutum HOM05D000306 ORTHO05D016211 1.1e-06 60.5 66 53.0
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 2.4e-06 59.3 47 66.0
AagrBONN_evm.TU.Sc2ySwM_228.35 Anthoceros agrestis HOM05D004478 ORTHO05D072883 3.2e-06 58.9 94 40.4


User provided reference genes

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