Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10018429m.g Citrus clementina HOM05D004435 ORTHO05D005103 0.0e+00 5206.7 2549 100.0
Atru.chr5.694 Acer truncatum HOM05D004435 ORTHO05D005103 0.0e+00 3690.2 2560 71.6
Manes.01G244500 Manihot esculenta HOM05D004435 ORTHO05D005103 0.0e+00 3132.0 2560 61.6
Cfa003785 Carpinus fangiana HOM05D004435 ORTHO05D005103 0.0e+00 3102.4 2554 62.1
COL.COLO4_06228 Corchorus olitorius HOM05D004435 ORTHO05D005103 0.0e+00 3102.0 2557 61.6
Potri.002G173300 Populus trichocarpa HOM05D004435 ORTHO05D005103 0.0e+00 3090.4 2585 61.2
Duzib133G0905 Durio zibethinus HOM05D004435 ORTHO05D005103 0.0e+00 3090.1 2560 62.1
Sabra02G0140000 Salix brachista HOM05D004435 ORTHO05D005103 0.0e+00 3058.1 2590 60.8
Gohir.D11G102800 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 3051.5 2560 61.2
Gorai.007G109900 Gossypium raimondii HOM05D004435 ORTHO05D005103 0.0e+00 3051.2 2560 61.1
Gohir.A11G098100 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 3047.3 2559 61.0
MD01G1083800 Malus domestica HOM05D004435 ORTHO05D005103 0.0e+00 3031.1 2582 59.7
QL08p045721 Quercus lobata HOM05D004435 ORTHO05D005103 0.0e+00 3021.5 2647 58.9
CiPaw.01G077800 Carya illinoinensis HOM05D004435 ORTHO05D005103 0.0e+00 3003.8 2555 60.1
RcHm_v2.0_Chr1g0360111 Rosa chinensis HOM05D004435 ORTHO05D005103 0.0e+00 2994.9 2559 59.6
FvH4_7g16880 Fragaria vesca HOM05D004435 ORTHO05D005103 0.0e+00 2986.4 2563 59.2
Dinv34221 Davidia involucrata HOM05D004435 ORTHO05D005103 0.0e+00 2986.1 2566 60.1
FAN06G0620 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2983.7 2563 59.2
FAN06G2443 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2975.7 2563 59.1
FAN03G2945 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2959.1 2569 58.8
FAN10G3841 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2942.9 2564 58.7
FAN10G0386 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2942.5 2564 58.7
Haze_15676 Corylus avellana HOM05D004435 ORTHO05D005103 0.0e+00 2941.0 2587 59.3
TWI14G0481 Tripterygium wilfordii HOM05D004435 ORTHO05D005103 0.0e+00 2929.4 2570 58.6
CSS0028718 Camellia sinensis var. sinensis HOM05D004435 ORTHO05D005103 0.0e+00 2866.6 2566 57.4
Prupe.2G190800 Prunus persica HOM05D004435 ORTHO05D005103 0.0e+00 2866.6 2423 60.1
CANSAT56G0169 Cannabis sativa HOM05D004435 ORTHO05D005103 0.0e+00 2840.8 2561 56.8
Lj3g0005802 Lotus japonicus HOM05D004435 ORTHO05D005103 0.0e+00 2766.9 2549 55.6
Glyma.07G054500 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 2758.8 2560 55.5
arahy.Tifrunner.gnm1.ann1.Y0VUSY Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 2746.8 2551 55.4
arahy.Tifrunner.gnm1.ann1.VXNL4X Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 2732.2 2551 55.2
Lalb_Chr10g0100641 Lupinus albus HOM05D004435 ORTHO05D005103 0.0e+00 2719.9 2557 54.8
Ca_23520_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 0.0e+00 2716.0 2563 55.4
Actinidia20252 Actinidia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 2702.5 2508 55.6
Rhsim07G0003000 Rhododendron simsii HOM05D004435 ORTHO05D005103 0.0e+00 2688.7 2561 54.8
Medtr8g027425 Medicago truncatula HOM05D004435 ORTHO05D005103 0.0e+00 2687.5 2551 55.0
VMungo0331G1532 Vigna mungo HOM05D004435 ORTHO05D005103 0.0e+00 2671.7 2566 53.7
CsaV3_3G007940 Cucumis sativus L. HOM05D004435 ORTHO05D005103 0.0e+00 2626.3 2553 54.0
vmacro04283 Vaccinium macrocarpon HOM05D004435 ORTHO05D005103 0.0e+00 2610.1 2626 52.4
MELO3C006012.2 Cucumis melo HOM05D004435 ORTHO05D005103 0.0e+00 2608.6 2553 53.7
Psat4g214760 Pisum sativum HOM05D004435 ORTHO05D005103 0.0e+00 2602.8 2591 53.0
Sed0001978 Sechium edule HOM05D004435 ORTHO05D005103 0.0e+00 2588.5 2570 53.2
Nn1g00298 Nelumbo nucifera HOM05D004435 ORTHO05D005103 0.0e+00 2546.9 2583 52.7
Eucgr.E00041 Eucalyptus grandis HOM05D004435 ORTHO05D005103 0.0e+00 2536.1 2579 51.6
ClCG05G000720 Citrullus lanatus HOM05D004435 ORTHO05D005103 0.0e+00 2519.2 2582 51.8
MBI06_g44136_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 0.0e+00 2515.7 2598 52.0
PGR044G1747 Punica granatum HOM05D004435 ORTHO05D005103 0.0e+00 2505.7 2582 51.6
GSVIVG01027171001 Vitis vinifera HOM05D004435 ORTHO05D005103 0.0e+00 2485.3 2552 52.3
Phvul.010G115000 Phaseolus vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 2483.0 2403 53.3
THA.LOC104802083 Tarenaya hassleriana HOM05D004435 ORTHO05D005103 0.0e+00 2456.0 2560 52.5
Cc02_g39580 Coffea canephora HOM05D004435 ORTHO05D005103 0.0e+00 2400.9 2585 49.9
Sopen01g039830 Solanum pennellii HOM05D004435 ORTHO05D005103 0.0e+00 2397.5 2557 49.8
Solyc01g096110.3 Solanum lycopersicum HOM05D004435 ORTHO05D005103 0.0e+00 2393.6 2557 49.6
AL4G45990 Arabidopsis lyrata HOM05D004435 ORTHO05D005103 0.0e+00 2387.1 2559 50.4
PSO135G0708 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 2382.4 2572 50.2
CAN.G1415.18 Capsicum annuum HOM05D004435 ORTHO05D005103 0.0e+00 2380.1 2556 49.8
Thecc.01G340200 Theobroma cacao HOM05D004435 ORTHO05D005103 0.0e+00 2378.2 1944 63.1
Thhalv10001279m.g Eutrema salsugineum HOM05D004435 ORTHO05D005103 0.0e+00 2364.0 2573 50.0
PSO384G1989 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 2363.6 2553 49.8
AT2G46560 Arabidopsis thaliana HOM05D004435 ORTHO05D005103 0.0e+00 2361.3 2589 50.1
Peaxi162Scf00345g00125 Petunia axillaris HOM05D004435 ORTHO05D005103 0.0e+00 2350.1 2573 49.2
Aqoxy1G03073 Aquilegia oxysepala HOM05D004435 ORTHO05D005103 0.0e+00 2345.9 2588 49.7
Sp4g28610 Schrenkiella parvula HOM05D004435 ORTHO05D005103 0.0e+00 2338.9 2560 50.3
A05p01210 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 2331.2 2567 49.5
BolC4t21789H Brassica oleracea HOM05D004435 ORTHO05D005103 0.0e+00 2325.4 2567 49.6
C04p01360 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 2323.1 2567 49.5
BraA05t19122Z Brassica rapa HOM05D004435 ORTHO05D005103 0.0e+00 2318.9 2568 49.4
Migut.B01890 Erythranthe guttata HOM05D004435 ORTHO05D005103 0.0e+00 2289.2 2555 48.1
BcaC02g12673 Brassica carinata HOM05D004435 ORTHO05D005103 0.0e+00 2256.1 2576 48.5
AUR62004511 Chenopodium quinoa HOM05D004435 ORTHO05D005103 0.0e+00 2250.3 2577 48.7
EL10Ac1g00244 Beta vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 2241.1 2585 47.7
HanXRQChr17g0563351 Helianthus annuus HOM05D004435 ORTHO05D005103 0.0e+00 2192.2 2530 48.5
Ah.05g179380 Amaranthus hybridus HOM05D004435 ORTHO05D005103 0.0e+00 2178.7 2569 47.6
SGA_v2.0_scaffold5G03029 Striga asiatica HOM05D004435 ORTHO05D005103 0.0e+00 2137.8 2545 46.4
Nitab4.5_0001763g0010 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 2121.7 2577 46.0
Hund27186 Selenicereus undatus HOM05D004435 ORTHO05D005103 0.0e+00 2080.1 2567 46.2
ECA234G2843 Erigeron canadensis HOM05D004435 ORTHO05D005103 0.0e+00 2061.6 2423 48.2
Lsat_1_v5_gn_4_33701 Lactuca sativa HOM05D004435 ORTHO05D005103 0.0e+00 1965.3 2530 45.5
TPR.G20238 Trifolium pratense HOM05D004435 ORTHO05D005103 0.0e+00 1917.9 1975 52.7
Glyma.16G023300 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 1891.3 1874 52.8
Zm00001eb356500 Zea mays HOM05D004435 ORTHO05D005103 0.0e+00 1833.9 2564 41.5
Sc01g0002520 Simmondsia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 1765.7 1928 49.6
CDE10G1324 Ceratophyllum demersum HOM05D004435 ORTHO05D005103 0.0e+00 1642.5 2581 38.7
unitig_736.g22808 Utricularia gibba HOM05D004435 ORTHO05D005103 0.0e+00 1598.6 2554 38.6
CARHR141900 Cardamine hirsuta HOM05D004435 ORTHO05D005103 0.0e+00 1495.3 1529 52.8
Carub.0004s2928 Capsella rubella HOM05D004435 ORTHO05D005103 0.0e+00 1494.9 1556 52.6
Aa31LG1G27940 Aethionema arabicum HOM05D004435 ORTHO05D005103 0.0e+00 1479.5 1529 53.0
TAR374G0897 Trochodendron aralioides HOM05D004435 ORTHO05D005103 0.0e+00 1453.7 1327 56.7
Hma1.2p1_0101F.1_g049200 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 0.0e+00 1408.7 1364 54.3
Lj7C498G9 Lonicera japonica HOM05D004435 ORTHO05D005103 0.0e+00 1269.2 1363 49.7
TAR374G0936 Trochodendron aralioides HOM05D004435 ORTHO05D005103 0.0e+00 1250.7 1106 58.1
Nitab4.5_0007244g0030 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 1249.6 1355 49.0
Lj7A498G38 Lonicera japonica HOM05D004435 ORTHO05D005103 0.0e+00 1153.3 1079 55.7
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 0.0e+00 1112.4 1366 45.8
Pp3c3_34200 Physcomitrium patens HOM05D004435 ORTHO05D005103 0.0e+00 1092.0 2753 30.2
ATR0605G097 Amborella trichopoda HOM05D004435 ORTHO05D005103 4.2e-308 1062.8 2005 36.4
DCAR_008666 Daucus carota HOM05D004435 ORTHO05D005103 1.5e-297 1027.7 1077 50.9
DCAR_008667 Daucus carota HOM05D004435 ORTHO05D005103 1.5e-297 1027.7 1077 50.9
Nitab4.5_0007244g0020 Nicotiana tabacum HOM05D004435 ORTHO05D005103 1.7e-277 961.1 1100 48.4
DCAR_008669 Daucus carota HOM05D004435 ORTHO05D005103 2.1e-262 911.0 1182 43.9
CARHR141910 Cardamine hirsuta HOM05D004435 ORTHO05D005103 1.5e-260 904.8 1027 47.2
AagrBONN_evm.TU.Sc2ySwM_228.2861 Anthoceros agrestis HOM05D004435 ORTHO05D005103 3.8e-232 810.4 1749 33.4
MBI06_g46370_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 1.0e-213 749.2 500 69.6
HPP92_020188 Vanilla planifolia HOM05D004435 ORTHO05D005103 5.2e-213 746.9 1182 37.4
ATR0605G027 Amborella trichopoda HOM05D004435 ORTHO05D005103 3.1e-210 737.6 589 61.6
Os01g0551900 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 1.8e-202 711.8 635 55.4
Hma1.2p1_0101F.1_g049210 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 3.8e-192 677.6 557 61.0
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 3.4e-188 664.5 764 50.1
Mapoly0001s0466 Marchantia polymorpha HOM05D004435 ORTHO05D005103 2.0e-185 655.2 2045 28.5
SEGI_18144 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 2.0e-185 655.2 1101 39.2
Hma1.2p1_0101F.1_g049290 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.9e-183 648.7 552 60.3
Cpa.g.c29521 Carica papaya HOM05D004435 ORTHO05D005103 8.3e-179 633.3 459 70.4
Hma1.2p1_0101F.1_g049270 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 2.0e-172 612.1 725 47.0
Aa31LG1G27950 Aethionema arabicum HOM05D004435 ORTHO05D005103 7.1e-154 550.4 754 42.2
SMO203G0146 Selaginella moellendorffii HOM05D004435 ORTHO05D005103 3.6e-150 538.1 463 54.4
TPR.G20227 Trifolium pratense HOM05D004435 ORTHO05D005103 2.6e-140 505.4 439 56.7
CBR_g19326 Chara braunii HOM05D004435 ORTHO05D005103 1.5e-127 463.0 2453 24.0
Hma1.2p1_0101F.1_g049280 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 5.5e-122 444.5 535 49.0
SEGI_19519 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 5.0e-115 421.4 950 33.4
DCAR_008668 Daucus carota HOM05D004435 ORTHO05D005103 8.8e-112 410.6 288 69.1
Cpa.g.sc96.46 Carica papaya HOM05D004435 ORTHO05D005103 2.2e-110 406.0 395 53.9
Cpa.g.sc96.43 Carica papaya HOM05D004435 ORTHO05D005103 6.3e-102 377.9 231 77.5
Psat4g016800 Pisum sativum HOM05D004435 ORTHO05D005103 7.7e-84 317.8 645 35.7
FAN01G0536 Fragaria x ananassa HOM05D004435 ORTHO05D005103 1.0e-83 317.4 197 74.6
ATR0242G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 4.1e-77 295.4 230 63.9
PGSC0003DMG400000235 Solanum tuberosum HOM05D004435 ORTHO05D005103 5.9e-76 291.6 181 73.5
Actinidia20096 Actinidia chinensis HOM05D004435 ORTHO05D005103 3.3e-74 285.8 405 43.2
Aa31LG1G27960 Aethionema arabicum HOM05D004435 ORTHO05D005103 9.5e-74 284.3 218 63.3
BcaC02g12668 Brassica carinata HOM05D004435 ORTHO05D005103 8.3e-70 271.2 240 56.2
Psat1g001920 Pisum sativum HOM05D004435 ORTHO05D005103 9.2e-53 214.5 228 47.8
Psat2g140840 Pisum sativum HOM05D004435 ORTHO05D005103 1.2e-52 214.2 546 31.3
Actinidia20091 Actinidia chinensis HOM05D004435 ORTHO05D005103 2.3e-51 209.9 417 37.6
Peaxi162Scf00345g00113 Petunia axillaris HOM05D002646 ORTHO05D002782 6.6e-51 208.4 377 38.5
Atru.chr5.691 Acer truncatum HOM05D004435 ORTHO05D005103 2.8e-49 203.0 120 80.0
Cpa.g.c42981 Carica papaya HOM05D004435 ORTHO05D005103 3.2e-45 189.5 217 47.5
Os01g0552000 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 1.2e-44 187.6 281 37.0
SEGI_02021 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 6.6e-43 181.8 138 63.8
Atru.chr5.692 Acer truncatum HOM05D004435 ORTHO05D005103 4.2e-37 162.5 102 79.4
ATR0028G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 2.3e-35 156.8 524 26.7
HanXRQChr10g0310771 Helianthus annuus HOM05D004435 ORTHO05D005103 4.3e-34 152.5 118 66.1
Cfa023431 Carpinus fangiana HOM05D004435 ORTHO05D005103 3.1e-32 146.4 234 35.9
Psat5g173920 Pisum sativum HOM05D004435 ORTHO05D005103 9.0e-32 144.8 198 39.4
Psat5g173880 Pisum sativum HOM05D004435 ORTHO05D005103 5.8e-31 142.1 176 41.5
AagrBONN_evm.TU.Sc2ySwM_228.2860 Anthoceros agrestis HOM05D004435 ORTHO05D005103 7.6e-31 141.7 260 35.8
Glyma.08G280100 Glycine max HOM05D004435 ORTHO05D005103 3.8e-30 139.4 88 80.7
MCO11G580 Micromonas commoda HOM05D004435 ORTHO05D005103 1.1e-29 137.9 234 36.8
FAN10G3206 Fragaria x ananassa HOM05D004435 ORTHO05D005103 3.2e-29 136.3 114 59.6
Ca_26677_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 7.1e-29 135.2 75 85.3
FAN10G3182 Fragaria x ananassa HOM05D004435 ORTHO05D005103 1.6e-28 134.0 113 58.4
Hma1.2p1_0101F.1_g049260 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 2.4e-24 120.2 99 60.6
Cre04.g223000 Chlamydomonas reinhardtii HOM05D004435 ORTHO05D005103 2.6e-23 116.7 238 32.8
Nitab4.5_0007244g0040 Nicotiana tabacum HOM05D004435 ORTHO05D005103 1.9e-21 110.5 121 48.8
HanXRQChr03g0082981 Helianthus annuus HOM05D004435 ORTHO05D005103 2.1e-20 107.1 128 49.2
TPR.G40720 Trifolium pratense HOM05D004435 ORTHO05D005103 8.7e-19 101.7 142 45.1
BcaNung07057 Brassica carinata HOM05D004435 ORTHO05D005103 2.8e-17 96.7 155 39.4
MapolyY_B0006 Marchantia polymorpha HOM05D004435 ORTHO05D005103 1.5e-15 90.9 294 26.5
Atru.chr5.687 Acer truncatum HOM05D002476 ORTHO05D002652 3.4e-15 89.7 57 82.5
MD07G1152500 Malus domestica HOM05D004435 ORTHO05D005103 1.0e-14 88.2 50 78.0
arahy.Tifrunner.gnm1.ann1.63Q0V0 Arachis hypogaea HOM05D008137 ORTHO05D005103 1.1e-13 84.7 118 46.6
SEGI_36456 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 3.9e-11 76.3 119 33.6
Psat0ss888g0080 Pisum sativum HOM05D004435 ORTHO05D005103 1.1e-08 68.2 90 43.3
Psat5g020760 Pisum sativum HOM05D004435 ORTHO05D005103 6.9e-08 65.5 90 41.1


User provided reference genes

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