Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10018336m.g Citrus clementina HOM05D008879 ORTHO05D010552 4.0e-41 171.0 87 100.0
Atru.chr6.2826 Acer truncatum HOM05D008879 ORTHO05D010552 1.2e-13 79.7 78 56.4
Sp4g13570 Schrenkiella parvula HOM05D008879 ORTHO05D010552 3.5e-13 78.2 84 53.6
BcaB01g04065 Brassica carinata HOM05D008879 ORTHO05D010552 5.1e-12 74.3 77 53.2
Potri.019G090800 Populus trichocarpa HOM05D008879 ORTHO05D010552 5.1e-12 74.3 85 51.8
BcaB06g28411 Brassica carinata HOM05D008879 ORTHO05D010552 1.5e-11 72.8 77 54.5
BcaB06g28488 Brassica carinata HOM05D008879 ORTHO05D010552 1.5e-11 72.8 77 54.5
C04p60330 Brassica napus HOM05D008879 ORTHO05D010552 1.5e-11 72.8 77 54.5
BolC4t27533H Brassica oleracea HOM05D008879 ORTHO05D010552 1.5e-11 72.8 77 54.5
CARHR124670 Cardamine hirsuta HOM05D008879 ORTHO05D010552 1.9e-11 72.4 76 52.6
A04p23850 Brassica napus HOM05D008879 ORTHO05D010552 2.5e-11 72.0 77 53.2
A05p14570 Brassica napus HOM05D008879 ORTHO05D010552 2.5e-11 72.0 76 51.3
BraA04t17908Z Brassica rapa HOM05D008879 ORTHO05D010552 2.5e-11 72.0 77 53.2
Haze_13339 Corylus avellana HOM05D008879 ORTHO05D010552 3.3e-11 71.6 80 56.2
Thhalv10017588m.g Eutrema salsugineum HOM05D008879 ORTHO05D010552 3.3e-11 71.6 77 53.2
Cfa014710 Carpinus fangiana HOM05D008879 ORTHO05D010552 5.6e-11 70.9 80 55.0
BcaC01g05980 Brassica carinata HOM05D008879 ORTHO05D010552 7.3e-11 70.5 77 55.8
C03p20490 Brassica napus HOM05D008879 ORTHO05D010552 7.3e-11 70.5 77 55.8
BolC3t14429H Brassica oleracea HOM05D008879 ORTHO05D010552 7.3e-11 70.5 77 55.8
Sabra19G0104400 Salix brachista HOM05D008879 ORTHO05D010552 9.6e-11 70.1 84 47.6
TWI14G0991 Tripterygium wilfordii HOM05D008879 ORTHO05D010552 9.6e-11 70.1 83 50.6
BcaC02g11194 Brassica carinata HOM05D008879 ORTHO05D010552 1.3e-10 69.7 76 51.3
C04p19410 Brassica napus HOM05D008879 ORTHO05D010552 1.3e-10 69.7 76 51.3
BolC4t23473H Brassica oleracea HOM05D008879 ORTHO05D010552 1.3e-10 69.7 76 51.3
AT2G31083 Arabidopsis thaliana HOM05D008879 ORTHO05D010552 2.1e-10 68.9 77 51.9
AL4G26260 Arabidopsis lyrata HOM05D008879 ORTHO05D010552 2.8e-10 68.6 77 51.9
BcaB02g10362 Brassica carinata HOM05D008879 ORTHO05D010552 2.8e-10 68.6 76 51.3
Sabra13G0100400 Salix brachista HOM05D008879 ORTHO05D010552 4.8e-10 67.8 68 55.9
A03p17370 Brassica napus HOM05D008879 ORTHO05D010552 6.2e-10 67.4 77 55.8
CARHR124660 Cardamine hirsuta HOM05D008879 ORTHO05D010552 6.2e-10 67.4 80 48.8
THA.LOC104826219 Tarenaya hassleriana HOM05D008879 ORTHO05D010552 6.2e-10 67.4 77 51.9
THA.LOC104826220 Tarenaya hassleriana HOM05D008879 ORTHO05D010552 6.2e-10 67.4 77 51.9
Carub.0004s1234 Capsella rubella HOM05D008879 ORTHO05D010552 3.1e-09 65.1 77 50.6
BraA03t11008Z Brassica rapa HOM05D008879 ORTHO05D010552 4.0e-09 64.7 77 54.5
Aa31LG5G5820 Aethionema arabicum HOM05D008879 ORTHO05D010552 5.3e-09 64.3 62 56.5
THA.LOC104815845 Tarenaya hassleriana HOM05D008879 ORTHO05D010552 1.2e-08 63.2 81 45.7
AL4G26270 Arabidopsis lyrata HOM05D008879 ORTHO05D010552 2.6e-08 62.0 83 45.8
Duzib147G0511 Durio zibethinus HOM05D002374 ORTHO05D010552 3.4e-08 61.6 81 51.9
Gohir.A09G002400 Gossypium hirsutum HOM05D019843 ORTHO05D010552 3.4e-08 61.6 68 45.6
Gohir.D09G002200 Gossypium hirsutum HOM05D019843 ORTHO05D010552 3.4e-08 61.6 68 45.6
Gorai.006G002700 Gossypium raimondii HOM05D019843 ORTHO05D010552 3.4e-08 61.6 68 45.6
AT2G31085 Arabidopsis thaliana HOM05D008879 ORTHO05D010552 4.4e-08 61.2 77 46.8
Gohir.A01G058000 Gossypium hirsutum HOM05D017499 ORTHO05D010552 5.8e-08 60.8 87 40.2
Gohir.D01G044400 Gossypium hirsutum HOM05D017499 ORTHO05D010552 5.8e-08 60.8 87 40.2
Gohir.D09G002000 Gossypium hirsutum HOM05D045456 ORTHO05D010552 5.8e-08 60.8 87 50.6
Gorai.006G002100 Gossypium raimondii HOM05D045456 ORTHO05D010552 5.8e-08 60.8 87 50.6
Carub.0004s1233 Capsella rubella HOM05D008879 ORTHO05D010552 1.3e-07 59.7 76 46.1
Cfa014709 Carpinus fangiana HOM05D024358 ORTHO05D024888 1.7e-07 59.3 87 43.7
PGSC0003DMG400019979 Solanum tuberosum HOM05D028609 ORTHO05D019109 1.7e-07 59.3 78 46.2
Haze_13337 Corylus avellana HOM05D024358 ORTHO05D024888 2.9e-07 58.5 87 37.9
Gorai.002G063600 Gossypium raimondii HOM05D017499 ORTHO05D010552 2.9e-07 58.5 86 37.2
Haze_13336 Corylus avellana HOM05D024358 ORTHO05D024888 3.8e-07 58.2 87 37.9
COL.COLO4_17611 Corchorus olitorius HOM05D017499 ORTHO05D010552 4.9e-07 57.8 49 49.0
Sopen07g027340 Solanum pennellii HOM05D028609 ORTHO05D019109 8.4e-07 57.0 78 43.6
Manes.16G036050 Manihot esculenta HOM05D012232 ORTHO05D013262 1.4e-06 56.2 82 40.2
TAR624G1413 Trochodendron aralioides HOM05D000001 ORTHO05D000003 1.4e-06 56.2 83 39.8
Manes.12G091100 Manihot esculenta HOM05D019843 ORTHO05D048714 1.9e-06 55.8 86 37.2
Manes.15G091400 Manihot esculenta HOM05D017499 ORTHO05D010552 7.1e-06 53.9 83 37.3
Potri.001G376200 Populus trichocarpa HOM05D008879 ORTHO05D010552 9.3e-06 53.5 78 39.7


User provided reference genes

Program Settings