Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10018330m.g Citrus clementina HOM05D007450 ORTHO05D009377 4.7e-49 197.6 103 100.0
Thecc.03G307400 Theobroma cacao HOM05D007450 ORTHO05D009377 4.1e-29 131.3 84 77.4
Manes.14G162800 Manihot esculenta HOM05D007450 ORTHO05D009377 6.0e-28 127.5 91 73.6
Cfa012487 Carpinus fangiana HOM05D007450 ORTHO05D009377 3.9e-27 124.8 84 77.4
Gohir.A12G207000 Gossypium hirsutum HOM05D007450 ORTHO05D009377 5.1e-27 124.4 86 76.7
CiPaw.11G096800 Carya illinoinensis HOM05D007450 ORTHO05D009377 8.6e-27 123.6 96 65.6
Dinv25243 Davidia involucrata HOM05D007450 ORTHO05D009377 7.3e-26 120.6 97 68.0
Dinv28985 Davidia involucrata HOM05D007450 ORTHO05D009377 7.3e-26 120.6 82 78.0
Duzib205G1651 Durio zibethinus HOM05D007450 ORTHO05D009377 1.6e-25 119.4 84 71.4
Potri.001G138700 Populus trichocarpa HOM05D007450 ORTHO05D009377 1.6e-25 119.4 97 66.0
Sabra01G0107700 Salix brachista HOM05D007450 ORTHO05D009377 2.1e-25 119.0 85 72.9
Actinidia09178 Actinidia chinensis HOM05D007450 ORTHO05D009377 6.2e-25 117.5 82 76.8
GSVIVG01013568001 Vitis vinifera HOM05D007450 ORTHO05D009377 1.1e-24 116.7 84 73.8
ECA233G1068 Erigeron canadensis HOM05D007450 ORTHO05D009377 1.8e-24 115.9 95 62.1
FAN08G0787 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.8e-24 115.9 90 71.1
Rhsim07G0130700 Rhododendron simsii HOM05D007450 ORTHO05D009377 2.4e-24 115.5 82 76.8
CSS0005314 Camellia sinensis var. sinensis HOM05D007450 ORTHO05D009377 4.0e-24 114.8 94 66.0
Lsat_1_v5_gn_6_1640 Lactuca sativa HOM05D007450 ORTHO05D009377 5.2e-24 114.4 95 61.1
FvH4_5g22750 Fragaria vesca HOM05D007450 ORTHO05D009377 6.8e-24 114.0 90 70.0
FAN18G1197 Fragaria x ananassa HOM05D007450 ORTHO05D009377 6.8e-24 114.0 90 70.0
FAN18G1518 Fragaria x ananassa HOM05D007450 ORTHO05D009377 6.8e-24 114.0 90 70.0
FAN13G0277 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.5e-23 112.8 90 68.9
FAN13G1033 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.5e-23 112.8 90 68.9
Nitab4.5_0000685g0040 Nicotiana tabacum HOM05D007450 ORTHO05D009377 1.5e-23 112.8 87 66.7
PGSC0003DMG400014800 Solanum tuberosum HOM05D007450 ORTHO05D009377 1.5e-23 112.8 83 69.9
Nitab4.5_0000353g0070 Nicotiana tabacum HOM05D007450 ORTHO05D009377 3.4e-23 111.7 83 68.7
Actinidia14787 Actinidia chinensis HOM05D007450 ORTHO05D009377 5.8e-23 110.9 82 74.4
FAN04G2147 Fragaria x ananassa HOM05D007450 ORTHO05D009377 5.8e-23 110.9 90 68.9
Medtr5g029660 Medicago truncatula HOM05D007450 ORTHO05D009377 5.8e-23 110.9 87 67.8
Sopen08g025140 Solanum pennellii HOM05D007450 ORTHO05D009377 7.6e-23 110.5 83 68.7
RcHm_v2.0_Chr7g0211351 Rosa chinensis HOM05D007450 ORTHO05D009377 9.9e-23 110.2 90 68.9
Solyc08g076580.3 Solanum lycopersicum HOM05D007450 ORTHO05D009377 9.9e-23 110.2 83 68.7
CAN.G298.58 Capsicum annuum HOM05D007450 ORTHO05D009377 1.3e-22 109.8 83 68.7
Gorai.008G225000 Gossypium raimondii HOM05D007450 ORTHO05D009377 1.3e-22 109.8 91 65.9
Potri.003G095100 Populus trichocarpa HOM05D007450 ORTHO05D009377 1.3e-22 109.8 85 69.4
Atru.chr6.1639 Acer truncatum HOM05D007450 ORTHO05D009377 1.7e-22 109.4 96 64.6
PGR031G1038 Punica granatum HOM05D007450 ORTHO05D009377 1.7e-22 109.4 83 67.5
Cc08_g03220 Coffea canephora HOM05D007450 ORTHO05D009377 2.2e-22 109.0 85 67.1
QL12p004405 Quercus lobata HOM05D007450 ORTHO05D009377 2.2e-22 109.0 92 69.6
DCAR_008242 Daucus carota HOM05D007450 ORTHO05D009377 2.9e-22 108.6 89 67.4
Gohir.D12G209400 Gossypium hirsutum HOM05D007450 ORTHO05D009377 2.9e-22 108.6 86 69.8
CANSAT21G1074 Cannabis sativa HOM05D007450 ORTHO05D009377 3.8e-22 108.2 98 62.2
Psat2g138000 Pisum sativum HOM05D007450 ORTHO05D009377 3.8e-22 108.2 87 66.7
vmacro14189 Vaccinium macrocarpon HOM05D007450 ORTHO05D009377 3.8e-22 108.2 82 72.0
Haze_08178 Corylus avellana HOM05D007450 ORTHO05D009377 8.4e-22 107.1 120 54.2
Peaxi162Scf00170g00915 Petunia axillaris HOM05D007450 ORTHO05D009377 1.1e-21 106.7 83 65.1
Peaxi162Scf00170g01010 Petunia axillaris HOM05D007450 ORTHO05D009377 1.9e-21 105.9 81 66.7
Peaxi162Scf00879g00221 Petunia axillaris HOM05D007450 ORTHO05D009377 1.9e-21 105.9 83 65.1
Lj2g0017142 Lotus japonicus HOM05D007450 ORTHO05D009377 3.2e-21 105.1 85 65.9
Prupe.5G030900 Prunus persica HOM05D007450 ORTHO05D009377 4.2e-21 104.8 101 59.4
Thhalv10009436m.g Eutrema salsugineum HOM05D007450 ORTHO05D009377 7.1e-21 104.0 100 54.0
MELO3C003430.2 Cucumis melo HOM05D007450 ORTHO05D009377 2.1e-20 102.4 84 61.9
ClCG09G011730 Citrullus lanatus HOM05D007450 ORTHO05D009377 3.5e-20 101.7 91 56.0
Sed0022287 Sechium edule HOM05D007450 ORTHO05D009377 3.5e-20 101.7 84 61.9
Ca_08150_v3 Cicer arietinum L. HOM05D007450 ORTHO05D009377 6.0e-20 100.9 86 64.0
HanXRQChr13g0395471 Helianthus annuus HOM05D007450 ORTHO05D009377 1.3e-19 99.8 95 55.8
Carub.0001s3064 Capsella rubella HOM05D007450 ORTHO05D009377 1.7e-19 99.4 91 58.2
TPR.G8094 Trifolium pratense HOM05D007450 ORTHO05D009377 2.3e-19 99.0 89 62.9
AT1G32310 Arabidopsis thaliana HOM05D007450 ORTHO05D009377 3.0e-19 98.6 97 54.6
BcaC05g27880 Brassica carinata HOM05D007450 ORTHO05D009377 3.0e-19 98.6 99 54.5
TAR629G3037 Trochodendron aralioides HOM05D007450 ORTHO05D009377 3.9e-19 98.2 102 56.9
Sp1g27980 Schrenkiella parvula HOM05D007450 ORTHO05D009377 5.1e-19 97.8 98 55.1
C05p38880 Brassica napus HOM05D007450 ORTHO05D009377 6.6e-19 97.4 100 54.0
BolC5t32629H Brassica oleracea HOM05D007450 ORTHO05D009377 6.6e-19 97.4 100 54.0
Sed0003049 Sechium edule HOM05D007450 ORTHO05D009377 1.1e-18 96.7 84 58.3
BcaB03g13745 Brassica carinata HOM05D007450 ORTHO05D009377 1.5e-18 96.3 98 53.1
THA.LOC104808475 Tarenaya hassleriana HOM05D007450 ORTHO05D009377 1.5e-18 96.3 85 58.8
A05p25040 Brassica napus HOM05D007450 ORTHO05D009377 1.9e-18 95.9 98 53.1
Aa31LG2G13720 Aethionema arabicum HOM05D007450 ORTHO05D009377 2.5e-18 95.5 96 53.1
THA.LOC104798592 Tarenaya hassleriana HOM05D007450 ORTHO05D009377 2.5e-18 95.5 85 58.8
Glyma.01G015700 Glycine max HOM05D007450 ORTHO05D009377 7.3e-18 94.0 89 59.6
BraA05t21386Z Brassica rapa HOM05D007450 ORTHO05D009377 2.1e-17 92.4 85 58.8
CARHR031660 Cardamine hirsuta HOM05D007450 ORTHO05D009377 2.1e-17 92.4 85 56.5
Glyma.09G206700 Glycine max HOM05D007450 ORTHO05D009377 3.6e-17 91.7 89 58.4
MD06G1038000 Malus domestica HOM05D007450 ORTHO05D009377 4.8e-17 91.3 100 54.0
VMungo1215G2816 Vigna mungo HOM05D007450 ORTHO05D009377 1.1e-16 90.1 88 58.0
Aqoxy3G02217 Aquilegia oxysepala HOM05D007450 ORTHO05D009377 2.4e-16 89.0 114 50.0
HPP92_001521 Vanilla planifolia HOM05D007450 ORTHO05D009377 2.4e-16 89.0 85 61.2
Eucgr.E00251 Eucalyptus grandis HOM05D007450 ORTHO05D009377 3.1e-16 88.6 84 57.1
Lalb_Chr05g0215841 Lupinus albus HOM05D007450 ORTHO05D009377 3.1e-16 88.6 77 62.3
ATR0829G039 Amborella trichopoda HOM05D007450 ORTHO05D009377 9.0e-16 87.0 94 54.3
Lalb_Chr16g0381181 Lupinus albus HOM05D007450 ORTHO05D009377 9.0e-16 87.0 80 63.8
arahy.Tifrunner.gnm1.ann1.UE78BX Arachis hypogaea HOM05D007450 ORTHO05D009377 1.2e-15 86.7 87 54.0
arahy.Tifrunner.gnm1.ann1.XXZI65 Arachis hypogaea HOM05D007450 ORTHO05D009377 1.2e-15 86.7 87 54.0
SHI36446 Sapria himalayana HOM05D007450 ORTHO05D009377 3.4e-15 85.1 55 72.7
AUR62018673 Chenopodium quinoa HOM05D007450 ORTHO05D009377 7.6e-15 84.0 89 51.7
PSO063G4138 Papaver somniferum HOM05D007450 ORTHO05D009377 1.3e-14 83.2 107 47.7
PSO782G2764 Papaver somniferum HOM05D007450 ORTHO05D009377 2.2e-14 82.4 107 46.7
MSTRG.1994 Avicennia marina HOM05D007450 ORTHO05D009377 6.4e-14 80.9 88 51.1
Hund11210 Selenicereus undatus HOM05D007450 ORTHO05D009377 8.4e-14 80.5 86 57.0
CDE11G0326 Ceratophyllum demersum HOM05D007450 ORTHO05D009377 2.4e-13 79.0 84 54.8
Phvul.002G138300 Phaseolus vulgaris HOM05D007450 ORTHO05D009377 7.8e-12 73.9 89 51.7
EL10Ac5g12043 Beta vulgaris HOM05D007450 ORTHO05D009377 1.3e-11 73.2 88 50.0
Sc01g0007300 Simmondsia chinensis HOM05D007450 ORTHO05D009377 1.7e-11 72.8 110 42.7
SalBow1G6923 Salvia bowleyana HOM05D007450 ORTHO05D009377 5.1e-11 71.2 47 70.2
Migut.E00781 Erythranthe guttata HOM05D007450 ORTHO05D009377 8.7e-11 70.5 46 73.9
Zm00001eb024740 Zea mays HOM05D007450 ORTHO05D009377 1.8e-08 62.8 50 60.0
CsaV3_3G048930 Cucumis sativus L. HOM05D007450 ORTHO05D009377 2.4e-08 62.4 43 69.8
Os10g0575950 Oryza sativa ssp. japonica HOM05D007450 ORTHO05D009377 6.9e-08 60.8 97 40.2
COL.COLO4_16968 Corchorus olitorius HOM05D007450 ORTHO05D009377 1.5e-07 59.7 41 70.7
CARHR033090 Cardamine hirsuta HOM05D007450 ORTHO05D009377 1.7e-06 56.2 47 53.2


User provided reference genes

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