Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10018267m.g Citrus clementina HOM05D000135 ORTHO05D000816 2.2e-20 102.8 51 100.0
Atru.chr6.2532 Acer truncatum HOM05D000135 ORTHO05D000816 1.2e-15 87.0 49 85.7
QL02p071822 Quercus lobata HOM05D000135 ORTHO05D000816 5.2e-14 81.6 49 81.6
RcHm_v2.0_Chr2g0175201 Rosa chinensis HOM05D000135 ORTHO05D000816 1.5e-13 80.1 49 79.6
Lj7C609T6 Lonicera japonica HOM05D000135 ORTHO05D000816 4.4e-13 78.6 51 72.5
Potri.001G332900 Populus trichocarpa HOM05D000135 ORTHO05D000816 4.4e-13 78.6 50 72.0
Haze_14848 Corylus avellana HOM05D000135 ORTHO05D000816 7.5e-13 77.8 51 74.5
Duzib147G0709 Durio zibethinus HOM05D000135 ORTHO05D000816 7.5e-13 77.8 48 77.1
FvH4_6g53150 Fragaria vesca HOM05D000135 ORTHO05D000816 7.5e-13 77.8 49 77.6
FAN14G0778 Fragaria x ananassa HOM05D000135 ORTHO05D000816 7.5e-13 77.8 49 77.6
Prupe.3G303600 Prunus persica HOM05D000135 ORTHO05D000816 7.5e-13 77.8 49 77.6
SalBow1G2517 Salvia bowleyana HOM05D016915 ORTHO05D000816 2.2e-12 76.3 49 71.4
SalBow7G4752 Salvia bowleyana HOM05D016915 ORTHO05D000816 2.2e-12 76.3 49 71.4
TWI12G0256 Tripterygium wilfordii HOM05D000135 ORTHO05D000816 2.2e-12 76.3 48 77.1
COL.COLO4_17166 Corchorus olitorius HOM05D000135 ORTHO05D000816 2.8e-12 75.9 46 76.1
Cfa021347 Carpinus fangiana HOM05D000135 ORTHO05D000816 3.7e-12 75.5 46 78.3
Gohir.D04G078000 Gossypium hirsutum HOM05D000135 ORTHO05D000816 3.7e-12 75.5 49 73.5
Gorai.012G087800 Gossypium raimondii HOM05D000135 ORTHO05D000816 3.7e-12 75.5 49 73.5
MD09G1013600 Malus domestica HOM05D000135 ORTHO05D000816 4.9e-12 75.1 49 75.5
Manes.15G159100 Manihot esculenta HOM05D000135 ORTHO05D000816 1.1e-11 73.9 47 74.5
SalBow1G7946 Salvia bowleyana HOM05D000135 ORTHO05D000816 1.8e-11 73.2 49 67.3
SalBow7G1515 Salvia bowleyana HOM05D000135 ORTHO05D000816 1.8e-11 73.2 49 67.3
Thecc.04G033300 Theobroma cacao HOM05D000135 ORTHO05D000816 1.8e-11 73.2 48 72.9
CANSAT64G0052 Cannabis sativa HOM05D000135 ORTHO05D000816 2.4e-11 72.8 48 72.9
CiPaw.03G053600 Carya illinoinensis HOM05D000135 ORTHO05D000816 2.4e-11 72.8 50 76.0
Gohir.A05G339500 Gossypium hirsutum HOM05D000135 ORTHO05D000816 2.4e-11 72.8 49 71.4
MD17G1014200 Malus domestica HOM05D000135 ORTHO05D000816 2.4e-11 72.8 49 73.5
Manes.17G104400 Manihot esculenta HOM05D000135 ORTHO05D000816 2.4e-11 72.8 46 71.7
FAN02G0421 Fragaria x ananassa HOM05D000135 ORTHO05D000816 3.1e-11 72.4 49 73.5
Sabra16G0213700 Salix brachista HOM05D000135 ORTHO05D000816 3.1e-11 72.4 48 66.7
Sabra16G0213800 Salix brachista HOM05D000135 ORTHO05D000816 3.1e-11 72.4 48 66.7
TPR.G39344 Trifolium pratense HOM05D000135 ORTHO05D000816 4.1e-11 72.0 49 71.4
Migut.K01452 Erythranthe guttata HOM05D016915 ORTHO05D000816 7.0e-11 71.2 46 69.6
SalBow1G3513 Salvia bowleyana HOM05D016915 ORTHO05D000816 9.2e-11 70.9 49 65.3
SalBow7G4318 Salvia bowleyana HOM05D016915 ORTHO05D000816 9.2e-11 70.9 46 69.6
Duzib264G0451 Durio zibethinus HOM05D000135 ORTHO05D000816 1.2e-10 70.5 45 71.1
Duzib264G0910 Durio zibethinus HOM05D000135 ORTHO05D000816 1.2e-10 70.5 45 71.1
Glyma.16G059300 Glycine max HOM05D000135 ORTHO05D000816 1.6e-10 70.1 49 69.4
Lju41C51T3 Lonicera japonica HOM05D000135 ORTHO05D000816 2.0e-10 69.7 46 69.6
Lalb_Chr14g0363211 Lupinus albus HOM05D000135 ORTHO05D000816 2.0e-10 69.7 48 72.9
VMungo0464G1988 Vigna mungo HOM05D000135 ORTHO05D000816 2.0e-10 69.7 51 68.6
Dinv33354 Davidia involucrata HOM05D000135 ORTHO05D000816 3.5e-10 68.9 45 75.6
Oeu011957.1 Olea europaea HOM05D000135 ORTHO05D000816 3.5e-10 68.9 48 70.8
DCAR_015089 Daucus carota HOM05D000135 ORTHO05D000816 4.5e-10 68.6 47 68.1
Cc07_g00660 Coffea canephora HOM05D000135 ORTHO05D000816 5.9e-10 68.2 49 63.3
Oeu035215.1 Olea europaea HOM05D000135 ORTHO05D000816 5.9e-10 68.2 46 67.4
Migut.K01451 Erythranthe guttata HOM05D000135 ORTHO05D000816 7.8e-10 67.8 46 67.4
Oeu035216.1 Olea europaea HOM05D000135 ORTHO05D000816 7.8e-10 67.8 49 61.2
Phvul.004G055200 Phaseolus vulgaris HOM05D000135 ORTHO05D000816 1.0e-09 67.4 51 66.7
PGR083G0560 Punica granatum HOM05D000135 ORTHO05D000816 1.0e-09 67.4 43 74.4
Psat3g176000 Pisum sativum HOM05D000135 ORTHO05D000816 1.3e-09 67.0 47 72.3
Migut.K01450 Erythranthe guttata HOM05D000135 ORTHO05D000816 1.7e-09 66.6 46 65.2
Medtr6g023460 Medicago truncatula HOM05D000135 ORTHO05D000816 2.3e-09 66.2 49 67.3
Psat1g085520 Pisum sativum HOM05D000135 ORTHO05D000816 2.3e-09 66.2 49 67.3
ECA232G4862 Erigeron canadensis HOM05D000135 ORTHO05D000816 2.9e-09 65.9 47 70.2
Hma1.2p1_1219F.1_g267970 Hydrangea macrophylla HOM05D000135 ORTHO05D000816 2.9e-09 65.9 46 67.4
Hma1.2p1_2105F.1_g314145 Hydrangea macrophylla HOM05D000135 ORTHO05D000816 2.9e-09 65.9 46 67.4
Glyma.19G088200 Glycine max HOM05D000135 ORTHO05D000816 3.8e-09 65.5 49 65.3
CSS0033756 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000816 6.6e-09 64.7 47 68.1
Eucgr.J02318 Eucalyptus grandis HOM05D000135 ORTHO05D000816 6.6e-09 64.7 49 63.3
Rhsim08G0044100 Rhododendron simsii HOM05D000135 ORTHO05D000816 6.6e-09 64.7 46 67.4
Lalb_Chr22g0360481 Lupinus albus HOM05D000135 ORTHO05D000816 8.6e-09 64.3 48 64.6
Hma1.2p1_1219F.1_g267940 Hydrangea macrophylla HOM05D000135 ORTHO05D000816 1.1e-08 63.9 46 63.0
Ca_28119_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000816 1.5e-08 63.5 49 63.3
MSTRG.3087 Avicennia marina HOM05D000135 ORTHO05D000816 2.5e-08 62.8 48 62.5
SGA_v2.0_scaffold47G17572 Striga asiatica HOM05D000135 ORTHO05D000816 2.5e-08 62.8 49 55.1
GSVIVG01013467001 Vitis vinifera HOM05D000135 ORTHO05D000816 3.3e-08 62.4 43 67.4
Oeu058772.1 Olea europaea HOM05D000135 ORTHO05D000816 4.3e-08 62.0 51 62.7
QL02p016339 Quercus lobata HOM05D000135 ORTHO05D000816 4.3e-08 62.0 42 66.7
SGA_v2.0_scaffold47G17571 Striga asiatica HOM05D000135 ORTHO05D000816 4.3e-08 62.0 46 58.7
Hma1.2p1_1219F.1_g267950 Hydrangea macrophylla HOM05D000135 ORTHO05D000816 5.6e-08 61.6 45 66.7
Sc07g0004160 Simmondsia chinensis HOM05D000135 ORTHO05D000816 5.6e-08 61.6 46 65.2
Actinidia05909 Actinidia chinensis HOM05D000135 ORTHO05D000816 7.3e-08 61.2 48 62.5
Lsat_1_v5_gn_4_185301 Lactuca sativa HOM05D000135 ORTHO05D000816 9.5e-08 60.8 49 59.2
Potri.002G001400 Populus trichocarpa HOM05D000135 ORTHO05D000816 9.5e-08 60.8 40 62.5
Phvul.001G095600 Phaseolus vulgaris HOM05D000135 ORTHO05D000816 1.6e-07 60.1 46 65.2
Potri.005G259900 Populus trichocarpa HOM05D000135 ORTHO05D000816 1.6e-07 60.1 44 56.8
Rhsim10G0007700 Rhododendron simsii HOM05D000135 ORTHO05D000816 1.6e-07 60.1 47 59.6
Rhsim10G0007900 Rhododendron simsii HOM05D000135 ORTHO05D000816 1.6e-07 60.1 47 59.6
TPR.G38330 Trifolium pratense HOM05D000135 ORTHO05D000816 1.6e-07 60.1 50 64.0
QL02p016392 Quercus lobata HOM05D000135 ORTHO05D000816 2.1e-07 59.7 48 58.3
vmacro05944 Vaccinium macrocarpon HOM05D000135 ORTHO05D000816 2.1e-07 59.7 48 62.5
HanXRQChr15g0486921 Helianthus annuus HOM05D000135 ORTHO05D000816 3.6e-07 58.9 49 55.1
Nitab4.5_0002498g0070 Nicotiana tabacum HOM05D000135 ORTHO05D000816 3.6e-07 58.9 42 59.5
Nitab4.5_0007815g0080 Nicotiana tabacum HOM05D000135 ORTHO05D000816 3.6e-07 58.9 42 59.5
Rhsim10G0008000 Rhododendron simsii HOM05D000135 ORTHO05D000816 3.6e-07 58.9 47 59.6
Solyc11g071740.2 Solanum lycopersicum HOM05D000135 ORTHO05D000816 3.6e-07 58.9 42 59.5
Sopen11g029410 Solanum pennellii HOM05D000135 ORTHO05D000816 3.6e-07 58.9 42 59.5
PGSC0003DMG400040538 Solanum tuberosum HOM05D000135 ORTHO05D000816 3.6e-07 58.9 42 59.5
PGSC0003DMG400045603 Solanum tuberosum HOM05D000135 ORTHO05D000816 3.6e-07 58.9 42 59.5
FvH4_5g26790 Fragaria vesca HOM05D000135 ORTHO05D000816 4.7e-07 58.5 43 62.8
FAN04G2622 Fragaria x ananassa HOM05D000135 ORTHO05D000816 4.7e-07 58.5 43 62.8
FAN08G1719 Fragaria x ananassa HOM05D000135 ORTHO05D000816 4.7e-07 58.5 43 62.8
FAN13G2467 Fragaria x ananassa HOM05D000135 ORTHO05D000816 4.7e-07 58.5 43 62.8
FAN18G1887 Fragaria x ananassa HOM05D000135 ORTHO05D000816 4.7e-07 58.5 43 62.8
QL02p016421 Quercus lobata HOM05D000135 ORTHO05D000816 4.7e-07 58.5 48 56.2
Prupe.5G000600 Prunus persica HOM05D000135 ORTHO05D000816 6.1e-07 58.2 43 65.1
Sabra05G0201600 Salix brachista HOM05D000135 ORTHO05D000816 6.1e-07 58.2 44 56.8
CAN.G1463.22 Capsicum annuum HOM05D000135 ORTHO05D000816 8.0e-07 57.8 46 54.3
Nitab4.5_0002498g0080 Nicotiana tabacum HOM05D000135 ORTHO05D000816 8.0e-07 57.8 42 59.5
Peaxi162Scf00259g00126 Petunia axillaris HOM05D000135 ORTHO05D000816 8.0e-07 57.8 40 60.0
QL02p016429 Quercus lobata HOM05D000135 ORTHO05D000816 8.0e-07 57.8 47 57.4
HanXRQChr15g0474941 Helianthus annuus HOM05D000135 ORTHO05D000816 1.0e-06 57.4 49 57.1
RcHm_v2.0_Chr7g0217701 Rosa chinensis HOM05D000135 ORTHO05D000816 1.0e-06 57.4 43 60.5
vmacro05943 Vaccinium macrocarpon HOM05D000135 ORTHO05D000816 1.0e-06 57.4 48 60.4
CANSAT25G2687 Cannabis sativa HOM05D000135 ORTHO05D000816 1.4e-06 57.0 41 68.3
Solyc06g073830.1 Solanum lycopersicum HOM05D000135 ORTHO05D000816 1.4e-06 57.0 48 52.1
PGSC0003DMG400002993 Solanum tuberosum HOM05D000135 ORTHO05D000816 1.4e-06 57.0 42 54.8
Cpa.g.sc36.91 Carica papaya HOM05D000135 ORTHO05D000816 1.8e-06 56.6 44 61.4
Migut.F00079 Erythranthe guttata HOM05D016915 ORTHO05D000816 1.8e-06 56.6 41 61.0
Eucgr.B00127 Eucalyptus grandis HOM05D000135 ORTHO05D000816 1.8e-06 56.6 46 58.7
Lj1g0014603 Lotus japonicus HOM05D000135 ORTHO05D000816 1.8e-06 56.6 46 65.2
Manes.05G113200 Manihot esculenta HOM05D000135 ORTHO05D000816 1.8e-06 56.6 42 59.5
Peaxi162Scf00098g00156 Petunia axillaris HOM05D000135 ORTHO05D000816 1.8e-06 56.6 42 59.5
Sopen06g030230 Solanum pennellii HOM05D000135 ORTHO05D000816 1.8e-06 56.6 46 54.3
PGSC0003DMG400005909 Solanum tuberosum HOM05D000135 ORTHO05D000816 1.8e-06 56.6 46 54.3
Lsat_1_v5_gn_9_1180 Lactuca sativa HOM05D000135 ORTHO05D000816 2.3e-06 56.2 49 53.1
Nn4g22363 Nelumbo nucifera HOM05D000135 ORTHO05D000816 2.3e-06 56.2 45 62.2
Nn4g22368 Nelumbo nucifera HOM05D000135 ORTHO05D000816 2.3e-06 56.2 45 62.2
Nitab4.5_0000875g0030 Nicotiana tabacum HOM05D000135 ORTHO05D000816 2.3e-06 56.2 46 56.5
Nitab4.5_0002183g0010 Nicotiana tabacum HOM05D000135 ORTHO05D000816 2.3e-06 56.2 46 56.5
TAR622G0710 Trochodendron aralioides HOM05D000135 ORTHO05D000816 2.3e-06 56.2 45 62.2
CAN.G473.85 Capsicum annuum HOM05D000135 ORTHO05D000816 3.0e-06 55.8 46 56.5
CsaV3_1G000650 Cucumis sativus L. HOM05D000135 ORTHO05D000816 3.0e-06 55.8 45 62.2
Peaxi162Scf00259g00018 Petunia axillaris HOM05D000135 ORTHO05D000816 3.0e-06 55.8 40 60.0
Rhsim10G0007800 Rhododendron simsii HOM05D000135 ORTHO05D000816 3.0e-06 55.8 45 60.0
VMungo1383G0529 Vigna mungo HOM05D000135 ORTHO05D000816 3.0e-06 55.8 51 54.9
CiPaw.07G129800 Carya illinoinensis HOM05D000135 ORTHO05D000816 4.0e-06 55.5 42 57.1
Sed0012230 Sechium edule HOM05D000135 ORTHO05D000816 4.0e-06 55.5 43 65.1
PGSC0003DMG400002994 Solanum tuberosum HOM05D000135 ORTHO05D000816 4.0e-06 55.5 42 54.8
GSVIVG01008516001 Vitis vinifera HOM05D000135 ORTHO05D000816 4.0e-06 55.5 43 60.5
Atru.chr13.16 Acer truncatum HOM05D000135 ORTHO05D000816 5.2e-06 55.1 43 58.1
MELO3C026214.2 Cucumis melo HOM05D000135 ORTHO05D000816 5.2e-06 55.1 45 62.2
MELO3C032128.2 Cucumis melo HOM05D000135 ORTHO05D000816 5.2e-06 55.1 47 57.4
CsaV3_3G027200 Cucumis sativus L. HOM05D000135 ORTHO05D000816 5.2e-06 55.1 47 57.4
MBI01_g09380_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000816 5.2e-06 55.1 44 54.5
MBI02_g10682_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000816 5.2e-06 55.1 44 54.5
ClCG06G017800 Citrullus lanatus HOM05D000135 ORTHO05D000816 6.8e-06 54.7 45 64.4
HanXRQChr09g0256101 Helianthus annuus HOM05D000135 ORTHO05D000816 6.8e-06 54.7 44 59.1
Nitab4.5_0002887g0060 Nicotiana tabacum HOM05D000135 ORTHO05D000816 6.8e-06 54.7 46 56.5
Solyc11g071760.3 Solanum lycopersicum HOM05D000135 ORTHO05D000816 6.8e-06 54.7 42 52.4
Sopen11g029420 Solanum pennellii HOM05D000135 ORTHO05D000816 6.8e-06 54.7 42 52.4
Sopen11g029430 Solanum pennellii HOM05D000135 ORTHO05D000816 6.8e-06 54.7 42 52.4
Eucgr.F03632 Eucalyptus grandis HOM05D000135 ORTHO05D000816 8.9e-06 54.3 45 55.6
Gorai.001G269500 Gossypium raimondii HOM05D000135 ORTHO05D000816 8.9e-06 54.3 41 63.4
Solyc02g094000.1 Solanum lycopersicum HOM05D000135 ORTHO05D000816 8.9e-06 54.3 46 54.3
PGSC0003DMG400020261 Solanum tuberosum HOM05D000135 ORTHO05D000816 8.9e-06 54.3 46 54.3


User provided reference genes

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