Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 1.4e-35 152.5 82 100.0
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 1.4e-24 115.9 76 77.6
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 5.4e-24 114.0 76 76.3
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 5.4e-24 114.0 76 76.3
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 9.3e-24 113.2 76 76.3
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 2.7e-23 111.7 76 75.0
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 4.6e-23 110.9 76 71.1
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 4.6e-23 110.9 76 71.1
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 4.6e-23 110.9 76 71.1
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 4.6e-23 110.9 76 71.1
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 7.9e-23 110.2 76 75.0
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 1.8e-22 109.0 76 73.7
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 1.8e-22 109.0 76 71.1
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 3.0e-22 108.2 76 72.4
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 3.0e-22 108.2 76 72.4
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 3.0e-22 108.2 76 72.4
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 3.0e-22 108.2 76 72.4
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 3.9e-22 107.8 76 72.4
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 3.9e-22 107.8 76 72.4
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 5.1e-22 107.5 76 72.4
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 6.7e-22 107.1 76 71.1
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 8.7e-22 106.7 76 72.4
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 1.1e-21 106.3 76 68.4
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 1.5e-21 105.9 76 69.7
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 1.9e-21 105.5 75 72.0
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 1.9e-21 105.5 76 71.1
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 2.5e-21 105.1 76 71.1
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 2.5e-21 105.1 76 71.1
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 2.5e-21 105.1 76 71.1
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 3.3e-21 104.8 76 69.7
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 4.3e-21 104.4 76 69.7
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 4.3e-21 104.4 76 69.7
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 5.6e-21 104.0 76 72.4
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 7.4e-21 103.6 75 70.7
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 7.4e-21 103.6 76 71.1
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 7.4e-21 103.6 76 68.4
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 7.4e-21 103.6 76 69.7
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 9.6e-21 103.2 76 68.4
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 9.6e-21 103.2 76 67.1
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 1.3e-20 102.8 76 67.1
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 2.1e-20 102.1 76 69.7
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 2.8e-20 101.7 75 68.0
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 2.8e-20 101.7 76 67.1
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 2.8e-20 101.7 76 65.8
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 2.8e-20 101.7 76 67.1
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 6.2e-20 100.5 81 60.5
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 1.4e-19 99.4 75 69.3
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 1.4e-19 99.4 75 66.7
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 1.4e-19 99.4 76 69.7
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 1.4e-19 99.4 76 71.1
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 1.8e-19 99.0 75 66.7
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 2.4e-19 98.6 75 66.7
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 2.4e-19 98.6 76 67.1
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 3.1e-19 98.2 76 65.8
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 3.1e-19 98.2 76 64.5
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 4.0e-19 97.8 76 64.5
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 5.3e-19 97.4 76 68.4
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 5.3e-19 97.4 76 64.5
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 6.9e-19 97.1 64 75.0
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 9.0e-19 96.7 76 68.4
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 9.0e-19 96.7 76 68.4
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 1.2e-18 96.3 76 63.2
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 1.2e-18 96.3 76 63.2
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 1.2e-18 96.3 76 64.5
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 1.2e-18 96.3 76 67.1
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 1.2e-18 96.3 75 65.3
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 1.2e-18 96.3 75 65.3
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 1.2e-18 96.3 76 67.1
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 1.5e-18 95.9 76 68.4
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 1.5e-18 95.9 68 69.1
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 2.0e-18 95.5 76 67.1
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 2.6e-18 95.1 76 67.1
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 3.4e-18 94.7 67 70.1
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 4.5e-18 94.4 76 61.8
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 4.5e-18 94.4 76 63.2
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 4.5e-18 94.4 76 61.8
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 4.5e-18 94.4 76 61.8
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 4.5e-18 94.4 65 69.2
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 4.5e-18 94.4 76 64.5
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 4.5e-18 94.4 76 65.8
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 5.8e-18 94.0 76 61.8
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 7.6e-18 93.6 76 63.2
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 1.0e-17 93.2 76 63.2
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 1.0e-17 93.2 76 65.8
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 1.7e-17 92.4 76 61.8
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 1.7e-17 92.4 76 63.2
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 2.9e-17 91.7 76 63.2
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 2.9e-17 91.7 76 61.8
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 3.8e-17 91.3 76 59.2
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 3.8e-17 91.3 76 60.5
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 6.5e-17 90.5 76 57.9
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 8.4e-17 90.1 76 59.2
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 8.4e-17 90.1 76 59.2
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 1.4e-16 89.4 75 61.3
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 4.2e-16 87.8 65 67.7
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 2.1e-15 85.5 76 59.2
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 1.3e-14 82.8 76 53.9
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 3.0e-14 81.6 76 56.6
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 6.7e-14 80.5 73 56.2
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 1.1e-13 79.7 76 57.9
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 1.9e-13 79.0 75 54.7
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 1.6e-12 75.9 69 53.6
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 5.3e-11 70.9 44 72.7
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 6.9e-11 70.5 76 46.1
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 6.9e-11 70.5 52 71.2
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 2.9e-09 65.1 71 39.4
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 8.4e-09 63.5 40 82.5
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 1.4e-08 62.8 75 42.7
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 7.1e-08 60.5 39 71.8
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 1.2e-07 59.7 45 62.2
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 2.7e-07 58.5 74 43.2
QL09p053081 Quercus lobata HOM05D002786 ORTHO05D030058 3.5e-07 58.2 41 68.3
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 4.6e-07 57.8 47 59.6
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 1.3e-06 56.2 73 37.0
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 3.9e-06 54.7 80 36.2


User provided reference genes

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