Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 1.1e-72 276.6 142 100.0
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 5.3e-27 124.8 99 70.7
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 1.2e-23 113.6 101 65.3
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 1.6e-23 113.2 91 68.1
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 2.7e-23 112.5 107 62.6
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 3.6e-23 112.1 101 66.3
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.8e-22 109.8 101 65.3
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 1.8e-22 109.8 101 65.3
Gorai.010G161500 Gossypium raimondii HOM05D005059 ORTHO05D004248 6.8e-22 107.8 101 61.4
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 2.6e-21 105.9 101 61.4
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 2.6e-21 105.9 105 61.0
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 5.7e-21 104.8 105 61.9
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 9.8e-21 104.0 102 58.8
Gohir.A06G133800 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.7e-20 103.2 102 60.8
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 6.3e-20 101.3 99 58.6
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.1e-19 100.5 101 59.4
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 1.8e-19 99.8 100 54.0
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 3.1e-19 99.0 100 54.0
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 4.1e-19 98.6 98 54.1
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 5.4e-19 98.2 90 62.2
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 5.4e-19 98.2 100 56.0
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 7.0e-19 97.8 100 53.0
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 7.0e-19 97.8 101 60.4
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 7.0e-19 97.8 101 60.4
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 7.0e-19 97.8 103 55.3
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 7.0e-19 97.8 99 60.6
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 1.2e-18 97.1 100 53.0
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 1.6e-18 96.7 100 52.0
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 2.0e-18 96.3 99 55.6
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 3.5e-18 95.5 102 54.9
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 3.5e-18 95.5 90 61.1
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 4.5e-18 95.1 100 57.0
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 5.9e-18 94.7 100 52.0
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 1.3e-17 93.6 99 54.5
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 2.3e-17 92.8 93 58.1
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 5.0e-17 91.7 101 59.4
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 6.5e-17 91.3 100 56.0
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 8.6e-17 90.9 103 56.3
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 1.1e-16 90.5 99 52.5
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 1.5e-16 90.1 99 49.5
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 1.5e-16 90.1 98 56.1
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.5e-16 90.1 95 55.8
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 1.9e-16 89.7 94 56.4
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 2.5e-16 89.4 109 48.6
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 9.5e-16 87.4 93 53.8
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 1.6e-15 86.7 91 54.9
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 2.8e-15 85.9 65 69.2
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 6.1e-15 84.7 91 53.8
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 1.0e-14 84.0 90 51.1
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 1.4e-14 83.6 100 52.0
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 4.0e-14 82.0 90 51.1
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 5.2e-14 81.6 91 50.5
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 6.8e-14 81.3 95 50.5
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 8.9e-14 80.9 104 51.0
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 1.5e-13 80.1 93 51.6
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 1.5e-13 80.1 99 47.5
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 2.6e-13 79.3 80 60.0
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 3.4e-13 79.0 100 50.0
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 4.4e-13 78.6 90 51.1
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 1.3e-12 77.0 90 52.2
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 1.3e-12 77.0 100 51.0
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 3.7e-12 75.5 100 48.0
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 3.7e-12 75.5 105 48.6
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 3.7e-12 75.5 94 53.2
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 4.9e-12 75.1 94 46.8
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 6.3e-12 74.7 102 42.2
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 6.3e-12 74.7 60 61.7
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 8.3e-12 74.3 64 60.9
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 1.1e-11 73.9 101 46.5
Eucgr.D00466 Eucalyptus grandis HOM05D005059 ORTHO05D004248 1.1e-11 73.9 97 47.4
Hma1.2p1_1016F.1_g248040 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 1.1e-11 73.9 92 53.3
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 1.1e-11 73.9 104 48.1
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 1.4e-11 73.6 80 58.8
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 1.4e-11 73.6 99 50.5
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 2.4e-11 72.8 78 59.0
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 2.4e-11 72.8 77 53.2
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 3.1e-11 72.4 106 48.1
BcaC06g35423 Brassica carinata HOM05D005059 ORTHO05D004248 3.1e-11 72.4 98 39.8
C07p16340 Brassica napus HOM05D005059 ORTHO05D004248 3.1e-11 72.4 98 39.8
BolC7t42128H Brassica oleracea HOM05D005059 ORTHO05D004248 3.1e-11 72.4 98 39.8
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 3.1e-11 72.4 97 43.3
Thecc.07G128100 Theobroma cacao HOM05D008890 ORTHO05D004248 4.1e-11 72.0 98 44.9
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 5.4e-11 71.6 97 46.4
AUR62039479 Chenopodium quinoa HOM05D005059 ORTHO05D004248 5.4e-11 71.6 81 54.3
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 5.4e-11 71.6 104 45.2
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 7.0e-11 71.2 99 46.5
A09p37060 Brassica napus HOM05D005059 ORTHO05D004248 7.0e-11 71.2 97 43.3
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 7.0e-11 71.2 99 46.5
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 7.0e-11 71.2 99 46.5
BraA09t39221Z Brassica rapa HOM05D005059 ORTHO05D004248 7.0e-11 71.2 97 43.3
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 7.0e-11 71.2 106 44.3
Sp1g25220 Schrenkiella parvula HOM05D005059 ORTHO05D004248 7.0e-11 71.2 97 43.3
Thecc.07G128300 Theobroma cacao HOM05D008890 ORTHO05D004248 7.0e-11 71.2 98 45.9
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 9.2e-11 70.9 97 42.3
CSS0000215 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 9.2e-11 70.9 101 49.5
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 1.2e-10 70.5 97 44.3
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.2e-10 70.5 89 49.4
BcaB07g32517 Brassica carinata HOM05D005059 ORTHO05D004248 1.6e-10 70.1 97 44.3
Nitab4.5_0000788g0070 Nicotiana tabacum HOM05D005059 ORTHO05D004248 2.0e-10 69.7 101 44.6
Thhalv10009585m.g Eutrema salsugineum HOM05D005059 ORTHO05D004248 2.7e-10 69.3 102 42.2
EL10Ac8g20558 Beta vulgaris HOM05D005059 ORTHO05D004248 3.5e-10 68.9 101 46.5
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 3.5e-10 68.9 98 40.8
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 3.5e-10 68.9 98 40.8
CSS0027903 Camellia sinensis var. sinensis HOM05D008890 ORTHO05D004248 3.5e-10 68.9 101 47.5
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 4.5e-10 68.6 103 46.6
Medtr2g016800 Medicago truncatula HOM05D005059 ORTHO05D004248 5.9e-10 68.2 108 46.3
Nitab4.5_0006663g0010 Nicotiana tabacum HOM05D005059 ORTHO05D004248 5.9e-10 68.2 94 44.7
CSS0004272 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 7.8e-10 67.8 92 47.8
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 7.8e-10 67.8 102 44.1
Ah.14g086980 Amaranthus hybridus HOM05D005059 ORTHO05D004248 1.3e-09 67.0 61 59.0
Duzib213G0742 Durio zibethinus HOM05D008890 ORTHO05D004248 1.3e-09 67.0 98 48.0
Migut.M01008 Erythranthe guttata HOM05D005059 ORTHO05D004248 1.3e-09 67.0 104 45.2
Thecc.07G128200 Theobroma cacao HOM05D008890 ORTHO05D004248 1.7e-09 66.6 100 46.0
TAR627G0061 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.3e-09 66.2 89 50.6
BcaB03g12151 Brassica carinata HOM05D005059 ORTHO05D004248 2.9e-09 65.9 99 44.4
MSTRG.7430 Avicennia marina HOM05D005059 ORTHO05D004248 3.8e-09 65.5 93 40.9
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 5.0e-09 65.1 54 59.3
Psat1g194640 Pisum sativum HOM05D005059 ORTHO05D004248 5.0e-09 65.1 105 40.0
Oeu061362.1 Olea europaea HOM05D005059 ORTHO05D004248 8.6e-09 64.3 92 43.5
Lsat_1_v5_gn_7_102441 Lactuca sativa HOM05D005059 ORTHO05D004248 1.5e-08 63.5 99 46.5
SGA_v2.0_scaffold1G00085 Striga asiatica HOM05D005059 ORTHO05D004248 1.9e-08 63.2 93 44.1
THA.LOC104820608 Tarenaya hassleriana HOM05D005059 ORTHO05D004248 1.9e-08 63.2 67 50.7
COL.COLO4_17491 Corchorus olitorius HOM05D008890 ORTHO05D004248 2.5e-08 62.8 99 43.4
Glyma.15G085800 Glycine max HOM05D005059 ORTHO05D004248 2.5e-08 62.8 99 39.4
Lalb_Chr15g0086331 Lupinus albus HOM05D005059 ORTHO05D004248 2.5e-08 62.8 100 42.0
Aa31LG6G6240 Aethionema arabicum HOM05D005059 ORTHO05D004248 3.3e-08 62.4 104 38.5
BcaC01g00093 Brassica carinata HOM05D005059 ORTHO05D004248 4.3e-08 62.0 98 41.8
C03p75700 Brassica napus HOM05D005059 ORTHO05D004248 4.3e-08 62.0 98 41.8
BolC3t19830H Brassica oleracea HOM05D005059 ORTHO05D004248 4.3e-08 62.0 98 41.8
ClCG01G023900 Citrullus lanatus HOM05D005059 ORTHO05D004248 4.3e-08 62.0 93 45.2
Duzib213G0473 Durio zibethinus HOM05D008890 ORTHO05D004248 4.3e-08 62.0 101 47.5
Rhsim13G0187700 Rhododendron simsii HOM05D005059 ORTHO05D004248 4.3e-08 62.0 101 46.5
A08p25180 Brassica napus HOM05D005059 ORTHO05D004248 5.6e-08 61.6 97 38.1
BraA08t34472Z Brassica rapa HOM05D005059 ORTHO05D004248 5.6e-08 61.6 97 38.1
Gohir.A01G049400 Gossypium hirsutum HOM05D008890 ORTHO05D004248 7.3e-08 61.2 100 45.0
Lsat_1_v5_gn_7_102321 Lactuca sativa HOM05D005059 ORTHO05D004248 7.3e-08 61.2 100 45.0
Carub.0001s2751 Capsella rubella HOM05D005059 ORTHO05D004248 1.6e-07 60.1 99 40.4
Hma1.2p1_0373F.1_g138420 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 2.1e-07 59.7 67 55.2
CDE02G4707 Ceratophyllum demersum HOM05D001096 ORTHO05D001629 3.6e-07 58.9 95 40.0
Actinidia18806 Actinidia chinensis HOM05D005059 ORTHO05D004248 4.7e-07 58.5 76 51.3
Gohir.D01G040000 Gossypium hirsutum HOM05D008890 ORTHO05D004248 4.7e-07 58.5 100 45.0
Gorai.002G049600 Gossypium raimondii HOM05D008890 ORTHO05D004248 4.7e-07 58.5 100 45.0
QL08p025461 Quercus lobata HOM05D008890 ORTHO05D004248 8.0e-07 57.8 95 44.2
Lsat_1_v5_gn_7_102341 Lactuca sativa HOM05D005059 ORTHO05D004248 1.0e-06 57.4 90 44.4
Lalb_Chr18g0054771 Lupinus albus HOM05D005059 ORTHO05D004248 1.0e-06 57.4 80 46.2
Gohir.D01G039700 Gossypium hirsutum HOM05D008890 ORTHO05D004248 1.4e-06 57.0 100 41.0
Gorai.002G049200 Gossypium raimondii HOM05D008890 ORTHO05D004248 1.4e-06 57.0 100 41.0
Gohir.A01G049100 Gossypium hirsutum HOM05D008890 ORTHO05D004248 1.8e-06 56.6 98 40.8
Gohir.D01G039900 Gossypium hirsutum HOM05D008890 ORTHO05D004248 1.8e-06 56.6 100 40.0
Gorai.002G049500 Gossypium raimondii HOM05D008890 ORTHO05D004248 1.8e-06 56.6 100 40.0
Atru.chr2.2076 Acer truncatum HOM05D022481 ORTHO05D023186 2.3e-06 56.2 92 42.4
Atru.chr2.2092 Acer truncatum HOM05D022481 ORTHO05D023186 4.0e-06 55.5 92 42.4
DCAR_013163 Daucus carota HOM05D005059 ORTHO05D004248 4.0e-06 55.5 90 38.9
Gohir.A01G050000 Gossypium hirsutum HOM05D008890 ORTHO05D004248 6.8e-06 54.7 102 44.1
Sed0013946 Sechium edule HOM05D005059 ORTHO05D004248 8.9e-06 54.3 53 58.5


User provided reference genes

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