Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10017963m.g Citrus clementina HOM05D004397 ORTHO05D005271 5.9e-12 72.8 35 100.0
FvH4_3g01410 Fragaria vesca HOM05D004397 ORTHO05D005271 5.0e-11 69.7 35 94.3
FAN21G0257 Fragaria x ananassa HOM05D004397 ORTHO05D005271 5.0e-11 69.7 35 94.3
FAN25G3034 Fragaria x ananassa HOM05D004397 ORTHO05D005271 5.0e-11 69.7 35 94.3
Gorai.009G181400 Gossypium raimondii HOM05D004397 ORTHO05D005271 1.1e-10 68.6 35 91.4
MBI05_g23392_MAGBIO Magnolia biondii HOM05D004397 ORTHO05D005271 1.1e-10 68.6 35 91.4
Rhsim04G0075400 Rhododendron simsii HOM05D004397 ORTHO05D005271 1.1e-10 68.6 35 91.4
MBI05_g10534_MAGBIO Magnolia biondii HOM05D004397 ORTHO05D005271 1.5e-10 68.2 35 88.6
Sabra04G0002500 Salix brachista HOM05D004397 ORTHO05D005271 1.9e-10 67.8 35 91.4
COL.COLO4_31830 Corchorus olitorius HOM05D004397 ORTHO05D005271 2.5e-10 67.4 35 91.4
Potri.004G004800 Populus trichocarpa HOM05D004397 ORTHO05D005271 2.5e-10 67.4 35 91.4
RcHm_v2.0_Chr5g0002131 Rosa chinensis HOM05D004397 ORTHO05D005271 2.5e-10 67.4 35 88.6
ATR0307G084 Amborella trichopoda HOM05D004397 ORTHO05D005271 3.3e-10 67.0 35 85.7
BcaB03g16800 Brassica carinata HOM05D004397 ORTHO05D005271 3.3e-10 67.0 35 91.4
BcaC06g36686 Brassica carinata HOM05D004397 ORTHO05D005271 3.3e-10 67.0 35 91.4
A07p00590 Brassica napus HOM05D004397 ORTHO05D005271 3.3e-10 67.0 35 91.4
C07p01050 Brassica napus HOM05D004397 ORTHO05D005271 3.3e-10 67.0 35 91.4
BolC7t40544H Brassica oleracea HOM05D004397 ORTHO05D005271 3.3e-10 67.0 35 91.4
BraA07t27855Z Brassica rapa HOM05D004397 ORTHO05D005271 3.3e-10 67.0 35 91.4
Carub.0003s3434 Capsella rubella HOM05D004397 ORTHO05D005271 3.3e-10 67.0 35 91.4
CARHR110570 Cardamine hirsuta HOM05D004397 ORTHO05D005271 3.3e-10 67.0 35 91.4
CiPaw.10G074300 Carya illinoinensis HOM05D004397 ORTHO05D005271 3.3e-10 67.0 35 91.4
Dinv12378 Davidia involucrata HOM05D004397 ORTHO05D005271 3.3e-10 67.0 35 91.4
ECA236G1813 Erigeron canadensis HOM05D004397 ORTHO05D005271 3.3e-10 67.0 35 91.4
Thhalv10002043m.g Eutrema salsugineum HOM05D004397 ORTHO05D005271 3.3e-10 67.0 35 91.4
HanXRQChr01g0014371 Helianthus annuus HOM05D004397 ORTHO05D005271 3.3e-10 67.0 35 91.4
Lsat_1_v5_gn_4_51441 Lactuca sativa HOM05D004397 ORTHO05D005271 3.3e-10 67.0 35 91.4
Lj4A769T44 Lonicera japonica HOM05D004397 ORTHO05D005271 3.3e-10 67.0 35 91.4
Lj6g0022899 Lotus japonicus HOM05D004397 ORTHO05D005271 3.3e-10 67.0 35 91.4
Solyc12g088730.2 Solanum lycopersicum HOM05D004397 ORTHO05D005271 3.3e-10 67.0 35 91.4
Sopen12g030630 Solanum pennellii HOM05D004397 ORTHO05D005271 3.3e-10 67.0 35 91.4
PGSC0003DMG400015407 Solanum tuberosum HOM05D004397 ORTHO05D005271 3.3e-10 67.0 35 91.4
GSVIVG01004810001 Vitis vinifera HOM05D004397 ORTHO05D005271 3.3e-10 67.0 35 91.4
BcaC07g41228 Brassica carinata HOM05D004397 ORTHO05D005271 4.3e-10 66.6 35 88.6
C08p42330 Brassica napus HOM05D004397 ORTHO05D005271 4.3e-10 66.6 35 88.6
BolC8t51793H Brassica oleracea HOM05D004397 ORTHO05D005271 4.3e-10 66.6 35 88.6
Gohir.A05G173000 Gossypium hirsutum HOM05D004397 ORTHO05D005271 4.3e-10 66.6 35 88.6
Gohir.D05G176000 Gossypium hirsutum HOM05D004397 ORTHO05D005271 4.3e-10 66.6 35 88.6
PSO063G2973 Papaver somniferum HOM05D004397 ORTHO05D005271 4.3e-10 66.6 35 88.6
PSO782G1961 Papaver somniferum HOM05D004397 ORTHO05D005271 4.3e-10 66.6 35 88.6
Sp3g33370 Schrenkiella parvula HOM05D004397 ORTHO05D005271 4.3e-10 66.6 35 88.6
Aa31LG8G17020 Aethionema arabicum HOM05D004397 ORTHO05D005271 5.6e-10 66.2 35 91.4
Haze_06856 Corylus avellana HOM05D004397 ORTHO05D005271 5.6e-10 66.2 35 88.6
Aqoxy1G03506 Aquilegia oxysepala HOM05D004397 ORTHO05D005271 7.3e-10 65.9 35 88.6
AT2G20060 Arabidopsis thaliana HOM05D004397 ORTHO05D005271 7.3e-10 65.9 35 88.6
Cpa.g.sc152.55 Carica papaya HOM05D004397 ORTHO05D005271 7.3e-10 65.9 35 88.6
Duzib192G0217 Durio zibethinus HOM05D004397 ORTHO05D005271 7.3e-10 65.9 35 88.6
Eucgr.G00454 Eucalyptus grandis HOM05D004397 ORTHO05D005271 7.3e-10 65.9 35 88.6
Hma1.2p1_0226F.1_g095780 Hydrangea macrophylla HOM05D004397 ORTHO05D005271 7.3e-10 65.9 35 88.6
Lalb_Chr20g0118931 Lupinus albus HOM05D004397 ORTHO05D005271 7.3e-10 65.9 35 88.6
Manes.16G003100 Manihot esculenta HOM05D004397 ORTHO05D005271 7.3e-10 65.9 35 88.6
Nitab4.5_0002335g0060 Nicotiana tabacum HOM05D004397 ORTHO05D005271 7.3e-10 65.9 35 88.6
Nitab4.5_0003508g0010 Nicotiana tabacum HOM05D004397 ORTHO05D005271 7.3e-10 65.9 35 88.6
Oeu023826.3 Olea europaea HOM05D004397 ORTHO05D005271 7.3e-10 65.9 35 88.6
Peaxi162Scf01073g00117 Petunia axillaris HOM05D004397 ORTHO05D005271 7.3e-10 65.9 35 88.6
SHI04147 Sapria himalayana HOM05D004397 ORTHO05D005271 7.3e-10 65.9 35 85.7
Actinidia22115 Actinidia chinensis HOM05D004397 ORTHO05D005271 9.5e-10 65.5 35 85.7
CiPaw.09G097700 Carya illinoinensis HOM05D004397 ORTHO05D005271 9.5e-10 65.5 35 88.6
AUR62001111 Chenopodium quinoa HOM05D004397 ORTHO05D005271 9.5e-10 65.5 35 88.6
AUR62008935 Chenopodium quinoa HOM05D004397 ORTHO05D005271 9.5e-10 65.5 35 88.6
Cc10_g04660 Coffea canephora HOM05D004397 ORTHO05D005271 9.5e-10 65.5 35 85.7
Hund00398 Selenicereus undatus HOM05D004397 ORTHO05D005271 9.5e-10 65.5 35 85.7
CAN.G1194.11 Capsicum annuum HOM05D004397 ORTHO05D005271 1.2e-09 65.1 35 88.6
SGA_v2.0_scaffold543G52819 Striga asiatica HOM05D004397 ORTHO05D005271 1.2e-09 65.1 35 88.6
MSTRG.1068 Avicennia marina HOM05D004397 ORTHO05D005271 1.6e-09 64.7 35 85.7
BcaB08g34896 Brassica carinata HOM05D004397 ORTHO05D005271 1.6e-09 64.7 35 85.7
CDE03G0208 Ceratophyllum demersum HOM05D004397 ORTHO05D005271 1.6e-09 64.7 35 85.7
CDE06G0724 Ceratophyllum demersum HOM05D004397 ORTHO05D005271 1.6e-09 64.7 35 85.7
Nn1g07269 Nelumbo nucifera HOM05D004397 ORTHO05D005271 1.6e-09 64.7 35 85.7
QL03p004896 Quercus lobata HOM05D004397 ORTHO05D005271 1.6e-09 64.7 34 88.2
TAR626G0623 Trochodendron aralioides HOM05D004397 ORTHO05D005271 1.6e-09 64.7 35 88.6
vmacro09207 Vaccinium macrocarpon HOM05D004397 ORTHO05D005271 1.6e-09 64.7 35 85.7
AL3G48030 Arabidopsis lyrata HOM05D004397 ORTHO05D005271 2.1e-09 64.3 35 88.6
arahy.Tifrunner.gnm1.ann1.8Y4J32 Arachis hypogaea HOM05D004397 ORTHO05D005271 2.1e-09 64.3 35 88.6
arahy.Tifrunner.gnm1.ann1.K9NX2S Arachis hypogaea HOM05D004397 ORTHO05D005271 2.1e-09 64.3 35 88.6
CSS0021903 Camellia sinensis var. sinensis HOM05D004397 ORTHO05D005271 2.1e-09 64.3 35 82.9
CSS0044102 Camellia sinensis var. sinensis HOM05D004397 ORTHO05D005271 2.1e-09 64.3 35 82.9
Thecc.06G227900 Theobroma cacao HOM05D004397 ORTHO05D005271 2.1e-09 64.3 35 85.7
PGR004G1068 Punica granatum HOM05D004397 ORTHO05D005271 2.8e-09 63.9 35 85.7
HPP92_018530 Vanilla planifolia HOM05D004397 ORTHO05D005271 2.8e-09 63.9 35 85.7
Zm00001eb061360 Zea mays HOM05D004397 ORTHO05D005271 2.8e-09 63.9 35 82.9
Ah.08g214470 Amaranthus hybridus HOM05D004397 ORTHO05D005271 4.7e-09 63.2 35 85.7
Oeu012435.1 Olea europaea HOM05D004397 ORTHO05D005271 4.7e-09 63.2 35 82.9
Os11g0585700 Oryza sativa ssp. japonica HOM05D004397 ORTHO05D005271 4.7e-09 63.2 35 80.0
Prupe.2G035900 Prunus persica HOM05D004397 ORTHO05D005271 4.7e-09 63.2 35 85.7
THA.LOC104809478 Tarenaya hassleriana HOM05D004397 ORTHO05D005271 4.7e-09 63.2 35 85.7
THA.LOC104823539 Tarenaya hassleriana HOM05D004397 ORTHO05D005271 4.7e-09 63.2 35 85.7
Atru.chr10.2278 Acer truncatum HOM05D004397 ORTHO05D005271 6.1e-09 62.8 35 85.7
BcaB03g16804 Brassica carinata HOM05D004397 ORTHO05D005271 6.1e-09 62.8 35 85.7
MD05G1352400 Malus domestica HOM05D004397 ORTHO05D005271 6.1e-09 62.8 35 85.7
SalBow7G0488 Salvia bowleyana HOM05D004397 ORTHO05D005271 6.1e-09 62.8 35 85.7
Sc16g0006660 Simmondsia chinensis HOM05D004397 ORTHO05D005271 6.1e-09 62.8 35 85.7
MELO3C007416.2 Cucumis melo HOM05D004397 ORTHO05D005271 8.0e-09 62.4 35 85.7
CsaV3_6G048740 Cucumis sativus L. HOM05D004397 ORTHO05D005271 8.0e-09 62.4 35 85.7
Migut.L00082 Erythranthe guttata HOM05D004397 ORTHO05D005271 8.0e-09 62.4 35 82.9
Migut.N02747 Erythranthe guttata HOM05D004397 ORTHO05D005271 8.0e-09 62.4 35 85.7
MD10G1326400 Malus domestica HOM05D004397 ORTHO05D005271 8.0e-09 62.4 35 82.9
Sed0005973 Sechium edule HOM05D004397 ORTHO05D005271 8.0e-09 62.4 35 85.7
Sed0027185 Sechium edule HOM05D004397 ORTHO05D005271 8.0e-09 62.4 35 85.7
Glyma.09G007300 Glycine max HOM05D004397 ORTHO05D005271 1.0e-08 62.0 35 85.7
Glyma.15G111700 Glycine max HOM05D004397 ORTHO05D005271 1.4e-08 61.6 35 85.7
EL10Ac7g17869 Beta vulgaris HOM05D004397 ORTHO05D005271 1.8e-08 61.2 35 82.9
TAR629G1518 Trochodendron aralioides HOM05D004397 ORTHO05D005271 1.8e-08 61.2 35 82.9
Ca_00691_v3 Cicer arietinum L. HOM05D004397 ORTHO05D005271 2.3e-08 60.8 35 80.0
Gohir.A06G150933 Gossypium hirsutum HOM05D004397 ORTHO05D005271 2.3e-08 60.8 35 82.9
Gorai.010G183700 Gossypium raimondii HOM05D004397 ORTHO05D005271 2.3e-08 60.8 35 82.9
TPR.G34683 Trifolium pratense HOM05D004397 ORTHO05D005271 2.3e-08 60.8 34 82.4
TWI38G0690 Tripterygium wilfordii HOM05D004397 ORTHO05D005271 2.3e-08 60.8 35 82.9
Migut.O00819 Erythranthe guttata HOM05D004397 ORTHO05D005271 3.1e-08 60.5 35 82.9
Medtr3g107920 Medicago truncatula HOM05D004397 ORTHO05D005271 3.1e-08 60.5 33 81.8
Psat5g077520 Pisum sativum HOM05D004397 ORTHO05D005271 3.1e-08 60.5 33 81.8
TWI63G0777 Tripterygium wilfordii HOM05D004397 ORTHO05D005271 5.2e-08 59.7 34 79.4
Prupe.4G015300 Prunus persica HOM05D004397 ORTHO05D005271 6.8e-08 59.3 35 82.9
unitig_37.g12949 Utricularia gibba HOM05D004397 ORTHO05D005271 6.8e-08 59.3 35 82.9
ClCG01G021700 Citrullus lanatus HOM05D004397 ORTHO05D005271 8.9e-08 58.9 35 80.0
VMungo0540G2306 Vigna mungo HOM05D004397 ORTHO05D005271 1.2e-07 58.5 35 82.9
Phvul.010G046600 Phaseolus vulgaris HOM05D004397 ORTHO05D005271 1.5e-07 58.2 35 80.0
Phvul.006G146000 Phaseolus vulgaris HOM05D004397 ORTHO05D005271 2.6e-07 57.4 35 80.0
Pp3c13_15330 Physcomitrium patens HOM05D004397 ORTHO05D005271 5.8e-07 56.2 34 76.5
SMO116G0021 Selaginella moellendorffii HOM05D004397 ORTHO05D005271 1.7e-06 54.7 34 79.4
Peaxi162Scf01027g00012 Petunia axillaris HOM05D004397 ORTHO05D005271 4.9e-06 53.1 34 73.5
AagrBONN_evm.TU.Sc2ySwM_228.2975 Anthoceros agrestis HOM05D004397 ORTHO05D005271 8.3e-06 52.4 34 67.6


User provided reference genes

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