Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10017196m.g Citrus clementina HOM05D007398 ORTHO05D004912 3.6e-64 248.1 123 100.0
Atru.chr6.3184 Acer truncatum HOM05D007398 ORTHO05D004912 3.5e-43 178.3 135 71.9
Atru.chr6.3183 Acer truncatum HOM05D007398 ORTHO05D004912 6.0e-43 177.6 135 71.9
TWI18G0787 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 5.1e-34 147.9 132 61.4
TWI75G1275 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 5.1e-34 147.9 132 62.1
CANSAT64G0797 Cannabis sativa HOM05D007398 ORTHO05D004912 4.8e-32 141.4 129 58.9
Prupe.3G217200 Prunus persica HOM05D007398 ORTHO05D004912 6.2e-32 141.0 132 59.8
RcHm_v2.0_Chr2g0159281 Rosa chinensis HOM05D007398 ORTHO05D004912 3.1e-31 138.7 131 60.3
MD17G1096900 Malus domestica HOM05D007398 ORTHO05D004912 5.8e-30 134.4 132 59.1
FvH4_6g43180 Fragaria vesca HOM05D007398 ORTHO05D004912 1.0e-29 133.7 132 59.1
MD09G1108900 Malus domestica HOM05D007398 ORTHO05D004912 1.0e-29 133.7 131 58.8
FAN05G1963 Fragaria x ananassa HOM05D007398 ORTHO05D004912 2.2e-29 132.5 132 58.3
FAN10G4171 Fragaria x ananassa HOM05D007398 ORTHO05D004912 2.9e-29 132.1 132 58.3
CiPaw.03G160000 Carya illinoinensis HOM05D007398 ORTHO05D004912 3.8e-29 131.7 142 54.2
FAN14G0586 Fragaria x ananassa HOM05D007398 ORTHO05D004912 8.4e-29 130.6 132 58.3
Hma1.2p1_0328F.1_g126925 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 8.4e-29 130.6 130 56.9
Hma1.2p1_0328F.1_g126930 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 8.4e-29 130.6 130 56.9
Gohir.A12G157600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 4.2e-28 128.3 120 56.7
Duzib251G0280 Durio zibethinus HOM05D007398 ORTHO05D004912 7.1e-28 127.5 120 58.3
FAN02G4350 Fragaria x ananassa HOM05D007398 ORTHO05D004912 7.1e-28 127.5 132 57.6
Haze_12865 Corylus avellana HOM05D007398 ORTHO05D004912 9.3e-28 127.1 145 51.7
Gorai.008G173500 Gossypium raimondii HOM05D007398 ORTHO05D004912 9.3e-28 127.1 120 57.5
CSS0017183 Camellia sinensis var. sinensis HOM05D007398 ORTHO05D004912 1.6e-27 126.3 131 56.5
FAN09G1954 Fragaria x ananassa HOM05D007398 ORTHO05D004912 2.1e-27 125.9 132 56.8
Cfa014400 Carpinus fangiana HOM05D007398 ORTHO05D004912 2.7e-27 125.6 144 50.7
TAR629G1636 Trochodendron aralioides HOM05D007398 ORTHO05D004912 7.9e-27 124.0 137 54.0
TAR626G0532 Trochodendron aralioides HOM05D007398 ORTHO05D004912 1.3e-26 123.2 129 52.7
Dinv39711 Davidia involucrata HOM05D007398 ORTHO05D004912 1.8e-26 122.9 133 54.9
Duzib248G0799 Durio zibethinus HOM05D007398 ORTHO05D004912 1.8e-26 122.9 120 56.7
Thecc.02G314700 Theobroma cacao HOM05D007398 ORTHO05D004912 5.1e-26 121.3 120 57.5
Actinidia30523 Actinidia chinensis HOM05D007398 ORTHO05D004912 6.7e-26 120.9 127 55.9
COL.COLO4_27711 Corchorus olitorius HOM05D007398 ORTHO05D004912 6.7e-26 120.9 121 57.0
Gohir.D12G159800 Gossypium hirsutum HOM05D007398 ORTHO05D004912 8.7e-26 120.6 120 55.8
TAR627G0987 Trochodendron aralioides HOM05D007398 ORTHO05D004912 1.9e-25 119.4 136 53.7
QL08p033081 Quercus lobata HOM05D007398 ORTHO05D004912 1.4e-23 113.2 145 51.7
Gohir.A04G144600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 4.1e-23 111.7 120 54.2
Manes.13G070200 Manihot esculenta HOM05D007398 ORTHO05D004912 5.3e-23 111.3 121 53.7
Nn1g03511 Nelumbo nucifera HOM05D007398 ORTHO05D004912 1.5e-22 109.8 123 49.6
Gohir.D04G189100 Gossypium hirsutum HOM05D007398 ORTHO05D004912 5.9e-22 107.8 120 53.3
Gorai.012G184400 Gossypium raimondii HOM05D007398 ORTHO05D004912 1.3e-21 106.7 120 53.3
Ca_01601_v3 Cicer arietinum L. HOM05D007398 ORTHO05D004912 6.5e-21 104.4 111 53.2
Cc05_g04620 Coffea canephora HOM05D007398 ORTHO05D004912 4.2e-20 101.7 112 54.5
Rhsim06G0162600 Rhododendron simsii HOM05D007398 ORTHO05D004912 9.3e-20 100.5 127 46.5
TPR.G4189 Trifolium pratense HOM05D007398 ORTHO05D004912 2.1e-19 99.4 124 47.6
Sed0010410 Sechium edule HOM05D007398 ORTHO05D004912 3.6e-19 98.6 126 46.0
ClCG02G008700 Citrullus lanatus HOM05D007398 ORTHO05D004912 4.6e-19 98.2 134 44.8
QL07p015665 Quercus lobata HOM05D007398 ORTHO05D004912 7.9e-19 97.4 128 52.3
Actinidia03605 Actinidia chinensis HOM05D007398 ORTHO05D004912 1.0e-18 97.1 123 48.8
Psat5g264000 Pisum sativum HOM05D007398 ORTHO05D004912 1.0e-18 97.1 114 50.9
arahy.Tifrunner.gnm1.ann1.TIC55L Arachis hypogaea HOM05D007398 ORTHO05D004912 1.8e-18 96.3 133 50.4
Eucgr.K00797 Eucalyptus grandis HOM05D007398 ORTHO05D004912 5.1e-18 94.7 126 46.8
Lsat_1_v5_gn_7_92201 Lactuca sativa HOM05D007398 ORTHO05D004912 8.8e-18 94.0 148 43.2
Oeu041920.1 Olea europaea HOM05D007398 ORTHO05D004912 1.1e-17 93.6 141 45.4
arahy.Tifrunner.gnm1.ann1.X0QM4L Arachis hypogaea HOM05D007398 ORTHO05D004912 1.9e-17 92.8 133 49.6
ClCG00G003290 Citrullus lanatus HOM05D007398 ORTHO05D004912 3.3e-17 92.0 123 47.2
ClCG02G001930 Citrullus lanatus HOM05D007398 ORTHO05D004912 3.3e-17 92.0 123 47.2
MELO3C018817.2 Cucumis melo HOM05D007398 ORTHO05D004912 5.7e-17 91.3 118 47.5
Lalb_Chr19g0135871 Lupinus albus HOM05D007398 ORTHO05D004912 7.4e-17 90.9 127 45.7
ECA236G3422 Erigeron canadensis HOM05D007398 ORTHO05D004912 9.7e-17 90.5 143 46.2
Phvul.005G115200 Phaseolus vulgaris HOM05D007398 ORTHO05D004912 1.7e-16 89.7 113 53.1
Manes.15G071300 Manihot esculenta HOM05D007398 ORTHO05D004912 2.2e-16 89.4 121 45.5
Glyma.13G308800 Glycine max HOM05D007398 ORTHO05D004912 2.8e-16 89.0 106 52.8
CsaV3_7G003580 Cucumis sativus L. HOM05D007398 ORTHO05D004912 4.8e-16 88.2 117 48.7
Cpa.g.sc12.298 Carica papaya HOM05D007398 ORTHO05D004912 8.2e-16 87.4 134 41.0
Glyma.12G193700 Glycine max HOM05D007398 ORTHO05D004912 3.1e-15 85.5 108 48.1
Medtr2g088320 Medicago truncatula HOM05D007398 ORTHO05D004912 4.1e-15 85.1 108 49.1
MBI02_g21879_MAGBIO Magnolia biondii HOM05D007398 ORTHO05D004912 5.3e-15 84.7 107 53.3
VMungo1080G0246 Vigna mungo HOM05D007398 ORTHO05D004912 5.3e-15 84.7 109 52.3
Sed0025347 Sechium edule HOM05D007398 ORTHO05D004912 9.1e-15 84.0 137 40.9
Lsat_1_v5_gn_9_106500 Lactuca sativa HOM05D007398 ORTHO05D004912 1.2e-14 83.6 146 43.2
Sed0017095 Sechium edule HOM05D007398 ORTHO05D004912 2.0e-14 82.8 124 41.1
Sed0017131 Sechium edule HOM05D007398 ORTHO05D004912 3.4e-14 82.0 125 46.4
Manes.03G130000 Manihot esculenta HOM05D007398 ORTHO05D004912 5.9e-14 81.3 117 43.6
Aqoxy1G02145 Aquilegia oxysepala HOM05D007398 ORTHO05D004912 2.2e-13 79.3 138 42.0
PSO541G0095 Papaver somniferum HOM05D007398 ORTHO05D004912 1.9e-12 76.3 147 40.1
Thecc.07G035100 Theobroma cacao HOM05D007398 ORTHO05D004912 1.9e-12 76.3 129 44.2
Gohir.A01G080300 Gossypium hirsutum HOM05D007398 ORTHO05D004912 3.2e-12 75.5 137 42.3
HanXRQChr16g0504931 Helianthus annuus HOM05D007398 ORTHO05D004912 3.2e-12 75.5 143 42.7
Gohir.D01G067500 Gossypium hirsutum HOM05D007398 ORTHO05D004912 4.2e-12 75.1 137 42.3
Gorai.002G089400 Gossypium raimondii HOM05D007398 ORTHO05D004912 4.2e-12 75.1 137 42.3
Lj4g0016348 Lotus japonicus HOM05D007398 ORTHO05D004912 2.7e-11 72.4 119 37.0
Lalb_Chr24g0393181 Lupinus albus HOM05D007398 ORTHO05D004912 2.7e-11 72.4 105 48.6
Duzib213G1052 Durio zibethinus HOM05D007398 ORTHO05D004912 1.0e-10 70.5 136 41.2
Zm00001eb273730 Zea mays HOM05D007398 ORTHO05D004912 1.0e-10 70.5 134 41.0
BcaC01g06332 Brassica carinata HOM05D009587 ORTHO05D004912 1.8e-10 69.7 118 35.6
SEGI_01426 Sequoiadendron giganteum HOM05D007398 ORTHO05D004912 3.0e-10 68.9 98 41.8
ATR0794G061 Amborella trichopoda HOM05D007398 ORTHO05D004912 3.9e-10 68.6 146 36.3
BraA03t10733Z Brassica rapa HOM05D009587 ORTHO05D004912 3.9e-10 68.6 112 36.6
HanXRQChr03g0069481 Helianthus annuus HOM05D007398 ORTHO05D004912 5.1e-10 68.2 126 38.9
Zm00001eb070220 Zea mays HOM05D007398 ORTHO05D004912 5.1e-10 68.2 132 37.9
CDE01G0169 Ceratophyllum demersum HOM05D001264 ORTHO05D001167 1.5e-09 66.6 132 38.6
THA.LOC104813425 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 3.3e-09 65.5 109 37.6
MSTRG.7209 Avicennia marina HOM05D011575 ORTHO05D004912 4.4e-09 65.1 97 44.3
Lj3g0008615 Lotus japonicus HOM05D007398 ORTHO05D004912 5.7e-09 64.7 115 41.7
A03p14360 Brassica napus HOM05D009587 ORTHO05D004912 7.4e-09 64.3 112 36.6
AT5G54970 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 9.7e-09 63.9 132 34.8
AUR62015784 Chenopodium quinoa HOM05D007398 ORTHO05D004912 1.3e-08 63.5 117 41.0
ECA240G1365 Erigeron canadensis HOM05D007398 ORTHO05D004912 1.3e-08 63.5 100 50.0
Sc16g0005970 Simmondsia chinensis HOM05D007398 ORTHO05D004912 1.3e-08 63.5 120 41.7
Zm00001eb431260 Zea mays HOM05D007398 ORTHO05D004912 1.3e-08 63.5 120 36.7
PGR083G1220 Punica granatum HOM05D007398 ORTHO05D004912 2.2e-08 62.8 110 40.0
QL05p073125 Quercus lobata HOM05D007398 ORTHO05D004912 2.8e-08 62.4 94 42.6
Carub.0007s1391 Capsella rubella HOM05D009587 ORTHO05D004912 3.7e-08 62.0 131 32.1
AUR62020433 Chenopodium quinoa HOM05D007398 ORTHO05D004912 6.3e-08 61.2 117 39.3
CARHR234560 Cardamine hirsuta HOM05D009587 ORTHO05D004912 8.2e-08 60.8 122 33.6
Thhalv10015018m.g Eutrema salsugineum HOM05D009587 ORTHO05D004912 1.1e-07 60.5 100 36.0
Os04g0624701 Oryza sativa ssp. japonica HOM05D007398 ORTHO05D004912 1.4e-07 60.1 122 36.9
Aa31LG3G10880 Aethionema arabicum HOM05D009587 ORTHO05D004912 1.8e-07 59.7 131 32.8
Ah.04g165930 Amaranthus hybridus HOM05D007398 ORTHO05D004912 1.8e-07 59.7 116 39.7
Migut.H01572 Erythranthe guttata HOM05D011575 ORTHO05D004912 1.8e-07 59.7 79 48.1
SGA_v2.0_scaffold4G01914 Striga asiatica HOM05D011575 ORTHO05D004912 1.8e-07 59.7 94 43.6
AT4G26960 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 2.4e-07 59.3 126 31.7
Medtr8g468960 Medicago truncatula HOM05D011727 ORTHO05D004912 3.1e-07 58.9 77 46.8
QL05p073115 Quercus lobata HOM05D007398 ORTHO05D004912 3.1e-07 58.9 93 43.0
Zm00001eb207520 Zea mays HOM05D067159 ORTHO05D050012 3.1e-07 58.9 103 40.8
Sp7g24900 Schrenkiella parvula HOM05D009587 ORTHO05D004912 4.1e-07 58.5 129 32.6
C03p16740 Brassica napus HOM05D009587 ORTHO05D004912 5.3e-07 58.2 112 34.8
Carub.0008s1526 Capsella rubella HOM05D009587 ORTHO05D004912 5.3e-07 58.2 137 33.6
Potri.006G052300 Populus trichocarpa HOM05D007398 ORTHO05D004912 7.0e-07 57.8 117 39.3
Sp6g16920 Schrenkiella parvula HOM05D009587 ORTHO05D004912 7.0e-07 57.8 104 39.4
AL8G30440 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 9.1e-07 57.4 136 31.6
BcaB01g04338 Brassica carinata HOM05D009587 ORTHO05D004912 9.1e-07 57.4 114 33.3
THA.LOC104817668 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 9.1e-07 57.4 101 37.6
BolC3t14094H Brassica oleracea HOM05D009587 ORTHO05D004912 1.2e-06 57.0 112 33.0
SGA_v2.0_scaffold7G03838 Striga asiatica HOM05D011575 ORTHO05D004912 1.5e-06 56.6 91 45.1
AL7G25880 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 2.6e-06 55.8 104 36.5
CARHR268310 Cardamine hirsuta HOM05D009587 ORTHO05D004912 4.5e-06 55.1 98 37.8
unitig_744.g24521 Utricularia gibba HOM05D011575 ORTHO05D004912 7.7e-06 54.3 111 41.4


User provided reference genes

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