Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10017072m.g Citrus clementina HOM05D004793 ORTHO05D004423 2.2e-79 298.9 151 100.0
Potri.006G016500 Populus trichocarpa HOM05D004793 ORTHO05D004423 6.7e-20 101.3 151 47.7
Sabra16G0013200 Salix brachista HOM05D004793 ORTHO05D004423 2.0e-19 99.8 153 48.4
Thecc.06G236700 Theobroma cacao HOM05D004793 ORTHO05D004423 1.3e-18 97.1 153 51.6
Sabra06G0011800 Salix brachista HOM05D004793 ORTHO05D004423 1.7e-18 96.7 155 47.7
Duzib192G0740 Durio zibethinus HOM05D004793 ORTHO05D004423 2.8e-18 95.9 153 48.4
Gohir.A06G155000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 4.8e-18 95.1 159 45.9
Gohir.D06G161500 Gossypium hirsutum HOM05D004793 ORTHO05D004423 4.8e-18 95.1 159 46.5
Gorai.010G188500 Gossypium raimondii HOM05D004793 ORTHO05D004423 1.1e-17 94.0 159 46.5
Cpa.g.sc2750.2 Carica papaya HOM05D004793 ORTHO05D004423 3.5e-16 89.0 151 47.0
Atru.chr1.2342 Acer truncatum HOM05D004793 ORTHO05D004423 5.9e-16 88.2 173 42.2
Potri.016G009200 Populus trichocarpa HOM05D004793 ORTHO05D004423 5.9e-16 88.2 154 46.1
Lalb_Chr15g0088081 Lupinus albus HOM05D004793 ORTHO05D004423 9.4e-14 80.9 154 44.2
PGR004G1083 Punica granatum HOM05D004793 ORTHO05D004423 2.1e-13 79.7 157 43.3
Eucgr.D01438 Eucalyptus grandis HOM05D004793 ORTHO05D004423 2.7e-13 79.3 157 41.4
Lj6g0021600 Lotus japonicus HOM05D004793 ORTHO05D004423 6.1e-13 78.2 155 43.9
Phvul.006G141500 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 6.1e-13 78.2 155 46.5
GSVIVG01002881001 Vitis vinifera HOM05D000222 ORTHO05D003997 8.0e-13 77.8 150 43.3
TPR.G10593 Trifolium pratense HOM05D004793 ORTHO05D004423 1.0e-12 77.4 161 43.5
Glyma.09G012000 Glycine max HOM05D004793 ORTHO05D004423 1.8e-12 76.6 98 53.1
Glyma.15G116700 Glycine max HOM05D004793 ORTHO05D004423 1.8e-12 76.6 157 43.9
Medtr2g026510 Medicago truncatula HOM05D004793 ORTHO05D004423 3.0e-12 75.9 163 42.9
Psat1g178240 Pisum sativum HOM05D004793 ORTHO05D004423 4.0e-12 75.5 154 42.2
QL05p068371 Quercus lobata HOM05D004793 ORTHO05D004423 4.0e-12 75.5 155 42.6
QL05p068872 Quercus lobata HOM05D004793 ORTHO05D004423 4.0e-12 75.5 151 42.4
Prupe.4G007200 Prunus persica HOM05D004793 ORTHO05D004423 2.6e-11 72.8 170 37.6
VMungo0540G1724 Vigna mungo HOM05D004793 ORTHO05D004423 2.6e-11 72.8 155 43.2
GSVIVG01037785001 Vitis vinifera HOM05D004793 ORTHO05D004423 4.4e-11 72.0 158 41.1
CiPaw.09G105400 Carya illinoinensis HOM05D004793 ORTHO05D004423 9.7e-11 70.9 166 41.6
CiPaw.12G136200 Carya illinoinensis HOM05D004793 ORTHO05D004423 9.7e-11 70.9 153 39.9
Haze_06976 Corylus avellana HOM05D004793 ORTHO05D004423 2.2e-10 69.7 157 43.3
Nn1g03234 Nelumbo nucifera HOM05D004793 ORTHO05D004423 2.8e-10 69.3 154 40.9
Nn1g07451 Nelumbo nucifera HOM05D004793 ORTHO05D004423 3.7e-10 68.9 155 42.6
CiPaw.10G079700 Carya illinoinensis HOM05D004793 ORTHO05D004423 6.3e-10 68.2 151 40.4
TAR627G0453 Trochodendron aralioides HOM05D004793 ORTHO05D004423 8.2e-10 67.8 154 36.4
Thecc.01G191000 Theobroma cacao HOM05D004793 ORTHO05D004423 1.1e-09 67.4 154 40.9
Aqoxy4G02224 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 4.1e-09 65.5 154 41.6
Cfa000070 Carpinus fangiana HOM05D004793 ORTHO05D004423 5.3e-09 65.1 151 41.1
Thecc.07G019600 Theobroma cacao HOM05D004793 ORTHO05D004423 7.0e-09 64.7 151 45.0
VMungo1215G0069 Vigna mungo HOM05D004793 ORTHO05D004423 7.0e-09 64.7 153 38.6
Prupe.3G201300 Prunus persica HOM05D004793 ORTHO05D004423 9.1e-09 64.3 160 38.1
CANSAT56G2188 Cannabis sativa HOM05D004793 ORTHO05D004423 1.2e-08 63.9 170 37.1
Medtr4g133720 Medicago truncatula HOM05D004793 ORTHO05D004423 1.2e-08 63.9 158 38.6
RcHm_v2.0_Chr5g0000811 Rosa chinensis HOM05D020126 ORTHO05D004423 1.2e-08 63.9 170 38.2
TPR.G6007 Trifolium pratense HOM05D004793 ORTHO05D004423 1.6e-08 63.5 155 38.1
Haze_09795 Corylus avellana HOM05D004793 ORTHO05D004423 2.0e-08 63.2 67 58.2
Cfa020226 Carpinus fangiana HOM05D004793 ORTHO05D004423 3.5e-08 62.4 153 37.3
CiPaw.11G201300 Carya illinoinensis HOM05D004793 ORTHO05D004423 4.5e-08 62.0 153 39.2
AL7G38540 Arabidopsis lyrata HOM05D010379 ORTHO05D012419 5.9e-08 61.6 151 36.4
Sabra14G0125700 Salix brachista HOM05D004793 ORTHO05D004423 5.9e-08 61.6 157 36.9
Atru.chr6.3360 Acer truncatum HOM05D004793 ORTHO05D004423 1.3e-07 60.5 152 34.9
THA.LOC104815481 Tarenaya hassleriana HOM05D010379 ORTHO05D012419 1.7e-07 60.1 153 38.6
Carub.0007s2506 Capsella rubella HOM05D010379 ORTHO05D012419 2.2e-07 59.7 153 36.6
Psat4g002280 Pisum sativum HOM05D004793 ORTHO05D004423 2.2e-07 59.7 90 47.8
A03p49840 Brassica napus HOM05D010379 ORTHO05D012419 2.9e-07 59.3 95 48.4
C07p47900 Brassica napus HOM05D010379 ORTHO05D012419 2.9e-07 59.3 95 48.4
BolC7t45312H Brassica oleracea HOM05D010379 ORTHO05D012419 2.9e-07 59.3 95 48.4
BraA03t14079Z Brassica rapa HOM05D010379 ORTHO05D012419 2.9e-07 59.3 95 48.4
Duzib138G1142 Durio zibethinus HOM05D004793 ORTHO05D004423 2.9e-07 59.3 151 35.8
FAN14G5076 Fragaria x ananassa HOM05D004793 ORTHO05D004423 2.9e-07 59.3 154 36.4
Manes.03G138300 Manihot esculenta HOM05D004793 ORTHO05D004423 2.9e-07 59.3 94 47.9
AT4G16447 Arabidopsis thaliana HOM05D010379 ORTHO05D012419 5.0e-07 58.5 153 35.9
CSS0021588 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 5.0e-07 58.5 152 38.8
FvH4_6g41090 Fragaria vesca HOM05D004793 ORTHO05D004423 5.0e-07 58.5 154 36.4
Glyma.17G007500 Glycine max HOM05D004793 ORTHO05D004423 5.0e-07 58.5 155 38.1
CARHR222830 Cardamine hirsuta HOM05D010379 ORTHO05D012419 6.5e-07 58.2 151 34.4
Eucgr.E03889 Eucalyptus grandis HOM05D004793 ORTHO05D004423 6.5e-07 58.2 36 80.6
MSTRG.7149 Avicennia marina HOM05D004793 ORTHO05D004423 8.5e-07 57.8 96 45.8
Glyma.07G266600 Glycine max HOM05D004793 ORTHO05D004423 8.5e-07 57.8 96 44.8
Lsat_1_v5_gn_7_13860 Lactuca sativa HOM05D004793 ORTHO05D004423 1.5e-06 57.0 161 36.0
Lj4g0015289 Lotus japonicus HOM05D004793 ORTHO05D004423 1.5e-06 57.0 157 36.9
TWI36G0659 Tripterygium wilfordii HOM05D004793 ORTHO05D004423 1.5e-06 57.0 93 45.2
Manes.12G061300 Manihot esculenta HOM05D004793 ORTHO05D004423 1.9e-06 56.6 151 33.8
Phvul.003G085100 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 1.9e-06 56.6 154 39.6
Rhsim13G0143200 Rhododendron simsii HOM05D004793 ORTHO05D004423 1.9e-06 56.6 158 36.1
Cpa.g.sc211.5 Carica papaya HOM05D004793 ORTHO05D004423 2.5e-06 56.2 156 38.5
Gohir.D01G074100 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.5e-06 56.2 151 37.7
FvH4_3g00600 Fragaria vesca HOM05D020126 ORTHO05D004423 3.2e-06 55.8 163 36.8
Manes.13G062900 Manihot esculenta HOM05D004793 ORTHO05D004423 3.2e-06 55.8 152 33.6
arahy.Tifrunner.gnm1.ann1.TPLS1U Arachis hypogaea HOM05D004793 ORTHO05D004423 4.2e-06 55.5 105 44.8
Sp7g15000 Schrenkiella parvula HOM05D010379 ORTHO05D012419 4.2e-06 55.5 87 47.1
Sed0019930 Sechium edule HOM05D028401 ORTHO05D004423 4.2e-06 55.5 158 38.0
Aqoxy1G04226 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 5.5e-06 55.1 82 47.6
RcHm_v2.0_Chr2g0156651 Rosa chinensis HOM05D004793 ORTHO05D004423 5.5e-06 55.1 151 35.1
BcaC09g50349 Brassica carinata HOM05D010379 ORTHO05D012419 7.2e-06 54.7 92 47.8
BolC1t02584H Brassica oleracea HOM05D010379 ORTHO05D012419 7.2e-06 54.7 92 47.8
Eucgr.A01045 Eucalyptus grandis HOM05D004793 ORTHO05D004423 7.2e-06 54.7 162 37.7
Gohir.A01G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 7.2e-06 54.7 151 35.1
Oeu029974.1 Olea europaea HOM05D027131 ORTHO05D013900 7.2e-06 54.7 46 67.4
Potri.001G362000 Populus trichocarpa HOM05D004793 ORTHO05D004423 7.2e-06 54.7 56 55.4
Thhalv10026565m.g Eutrema salsugineum HOM05D010379 ORTHO05D012419 9.4e-06 54.3 90 46.7


User provided reference genes

Program Settings