Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 9.6e-86 320.1 158 100.0
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 3.6e-24 115.5 109 59.6
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 1.0e-23 114.0 113 57.5
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 1.8e-23 113.2 109 55.0
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 2.0e-22 109.8 116 55.2
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 2.0e-22 109.8 99 60.6
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 2.6e-22 109.4 97 61.9
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 3.4e-22 109.0 114 57.0
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 4.4e-22 108.6 110 54.5
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 5.8e-22 108.2 110 53.6
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 5.8e-22 108.2 117 55.6
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 9.8e-22 107.5 114 54.4
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.3e-21 107.1 119 52.1
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 1.7e-21 106.7 110 54.5
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 1.7e-21 106.7 97 57.7
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 2.9e-21 105.9 117 51.3
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 2.9e-21 105.9 117 51.3
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 4.9e-21 105.1 113 53.1
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 8.3e-21 104.4 95 57.9
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 1.1e-20 104.0 110 55.5
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 1.1e-20 104.0 112 52.7
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 1.4e-20 103.6 112 53.6
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 1.9e-20 103.2 111 55.9
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 2.4e-20 102.8 120 55.8
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 4.1e-20 102.1 98 56.1
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 5.4e-20 101.7 110 45.5
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 7.0e-20 101.3 114 54.4
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 7.0e-20 101.3 114 54.4
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 7.0e-20 101.3 114 54.4
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 1.2e-19 100.5 111 51.4
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 1.2e-19 100.5 111 51.4
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 2.0e-19 99.8 123 52.0
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 2.0e-19 99.8 108 53.7
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 2.0e-19 99.8 112 50.9
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 2.0e-19 99.8 98 56.1
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 2.0e-19 99.8 113 54.9
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 2.7e-19 99.4 116 49.1
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 3.5e-19 99.0 114 54.4
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 4.6e-19 98.6 113 54.0
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 7.8e-19 97.8 99 57.6
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 7.8e-19 97.8 112 50.0
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 1.0e-18 97.4 111 49.5
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 1.0e-18 97.4 111 49.5
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 1.0e-18 97.4 113 53.1
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 1.3e-18 97.1 94 58.5
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.7e-18 96.7 100 56.0
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 1.7e-18 96.7 93 58.1
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.3e-18 96.3 102 51.0
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 2.3e-18 96.3 110 48.2
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 3.0e-18 95.9 107 48.6
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 3.0e-18 95.9 97 56.7
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 3.0e-18 95.9 111 54.1
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 3.0e-18 95.9 106 49.1
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 3.9e-18 95.5 97 56.7
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 6.6e-18 94.7 111 53.2
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 8.6e-18 94.4 104 49.0
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 8.6e-18 94.4 110 44.5
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.1e-17 94.0 111 50.5
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 1.1e-17 94.0 96 50.0
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 1.1e-17 94.0 110 44.5
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 2.5e-17 92.8 83 60.2
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 2.5e-17 92.8 110 49.1
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 3.3e-17 92.4 97 49.5
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 5.6e-17 91.7 107 49.5
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 7.3e-17 91.3 95 50.5
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 7.3e-17 91.3 113 50.4
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 9.5e-17 90.9 108 53.7
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 9.5e-17 90.9 112 45.5
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 9.5e-17 90.9 112 49.1
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 1.6e-16 90.1 99 50.5
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 2.8e-16 89.4 104 45.2
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 3.6e-16 89.0 96 51.0
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 3.6e-16 89.0 100 44.0
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 3.6e-16 89.0 98 49.0
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 6.2e-16 88.2 98 48.0
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 8.1e-16 87.8 114 50.0
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 1.1e-15 87.4 113 44.2
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 1.1e-15 87.4 111 45.0
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.8e-15 86.7 93 50.5
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 2.3e-15 86.3 104 43.3
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 2.3e-15 86.3 95 47.4
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 3.1e-15 85.9 99 51.5
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 3.1e-15 85.9 99 51.5
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 4.0e-15 85.5 106 45.3
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 4.0e-15 85.5 98 49.0
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 5.2e-15 85.1 111 45.9
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 5.2e-15 85.1 110 50.0
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 6.8e-15 84.7 99 45.5
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 8.9e-15 84.3 142 38.7
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 1.2e-14 84.0 99 49.5
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.5e-14 83.6 100 48.0
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 1.5e-14 83.6 99 46.5
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.6e-14 82.8 99 44.4
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 3.4e-14 82.4 99 48.5
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 3.4e-14 82.4 101 47.5
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 5.8e-14 81.6 99 48.5
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 7.5e-14 81.3 103 45.6
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 9.8e-14 80.9 98 45.9
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 1.3e-13 80.5 102 48.0
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 1.3e-13 80.5 99 47.5
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 2.2e-13 79.7 96 46.9
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 2.2e-13 79.7 96 46.9
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 3.7e-13 79.0 96 45.8
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 3.7e-13 79.0 95 45.3
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 6.4e-13 78.2 96 45.8
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 6.4e-13 78.2 101 44.6
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 1.4e-12 77.0 113 41.6
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 1.4e-12 77.0 95 44.2
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 1.9e-12 76.6 103 43.7
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 1.9e-12 76.6 113 38.9
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 2.4e-12 76.3 100 44.0
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 3.2e-12 75.9 95 44.2
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 4.1e-12 75.5 92 45.7
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 7.1e-12 74.7 97 42.3
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 9.2e-12 74.3 100 44.0
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.6e-11 73.6 97 44.3
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 2.1e-11 73.2 109 39.4
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 2.1e-11 73.2 85 50.6
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 2.7e-11 72.8 113 38.9
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 2.7e-11 72.8 113 37.2
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 4.6e-11 72.0 95 42.1
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 6.0e-11 71.6 120 39.2
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 6.0e-11 71.6 120 39.2
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 7.8e-11 71.2 100 43.0
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 1.0e-10 70.9 108 39.8
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 1.3e-10 70.5 82 46.3
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 1.3e-10 70.5 97 43.3
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 1.3e-10 70.5 96 44.8
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 2.3e-10 69.7 96 43.8
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 5.1e-10 68.6 95 41.1
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 5.1e-10 68.6 95 41.1
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 8.6e-10 67.8 88 45.5
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 8.6e-10 67.8 120 37.5
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 8.6e-10 67.8 120 37.5
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 1.1e-09 67.4 95 40.0
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 1.1e-09 67.4 50 62.0
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 1.1e-09 67.4 90 44.4
Sed0002977 Sechium edule HOM05D005150 ORTHO05D006070 1.9e-09 66.6 108 38.0
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 5.6e-09 65.1 95 38.9
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 3.6e-08 62.4 104 40.4
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 8.1e-08 61.2 83 41.0
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 3.1e-07 59.3 95 37.9
Peaxi162Scf32072g00001 Petunia axillaris HOM05D005150 ORTHO05D006070 6.8e-07 58.2 49 61.2
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 9.9e-06 54.3 89 38.2


User provided reference genes

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