Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10016943m.g Citrus clementina HOM05D007681 ORTHO05D009734 3.2e-90 335.1 173 100.0
Atru.chr11.647 Acer truncatum HOM05D007681 ORTHO05D009734 2.1e-41 172.9 179 56.4
Cpa.g.sc2.238 Carica papaya HOM05D007681 ORTHO05D009734 6.7e-32 141.4 163 48.5
Cfa014982 Carpinus fangiana HOM05D007681 ORTHO05D009734 2.0e-31 139.8 175 47.4
Gohir.1Z015700 Gossypium hirsutum HOM05D007681 ORTHO05D009734 2.8e-30 136.0 110 60.9
Gohir.A01G150154 Gossypium hirsutum HOM05D007681 ORTHO05D009734 2.8e-30 136.0 110 60.9
CiPaw.06G048600 Carya illinoinensis HOM05D007681 ORTHO05D009734 3.7e-30 135.6 174 47.1
Gorai.002G176600 Gossypium raimondii HOM05D007681 ORTHO05D009734 3.7e-30 135.6 110 60.0
Gohir.D01G143200 Gossypium hirsutum HOM05D007681 ORTHO05D009734 3.1e-29 132.5 110 59.1
Eucgr.B02939 Eucalyptus grandis HOM05D007681 ORTHO05D009734 9.1e-29 131.0 176 44.9
PGR102G0336 Punica granatum HOM05D007681 ORTHO05D009734 2.2e-27 126.3 161 44.7
Thecc.02G287600 Theobroma cacao HOM05D007681 ORTHO05D009734 5.0e-27 125.2 178 44.4
Actinidia36647 Actinidia chinensis HOM05D007681 ORTHO05D009734 1.9e-26 123.2 163 46.0
Sp2g13030 Schrenkiella parvula HOM05D007681 ORTHO05D009734 9.4e-26 120.9 164 42.1
Prupe.1G330200 Prunus persica HOM05D007681 ORTHO05D009734 1.6e-25 120.2 180 43.9
Sabra10G0080500 Salix brachista HOM05D007681 ORTHO05D009734 6.1e-25 118.2 181 45.3
TPR.G36897 Trifolium pratense HOM05D007681 ORTHO05D009734 6.1e-25 118.2 177 44.1
Dinv28046 Davidia involucrata HOM05D007681 ORTHO05D009734 8.0e-25 117.9 112 56.2
TWI77G0184 Tripterygium wilfordii HOM05D007681 ORTHO05D009734 8.0e-25 117.9 116 50.9
ECA233G2077 Erigeron canadensis HOM05D007681 ORTHO05D009734 2.3e-24 116.3 161 44.7
Manes.15G131200 Manihot esculenta HOM05D007681 ORTHO05D009734 2.3e-24 116.3 188 41.0
BolC2t11054H Brassica oleracea HOM05D007681 ORTHO05D009734 3.0e-24 115.9 160 43.8
Oeu063591.1 Olea europaea HOM05D007681 ORTHO05D009734 3.0e-24 115.9 163 42.9
Medtr1g031740 Medicago truncatula HOM05D007681 ORTHO05D009734 4.0e-24 115.5 174 43.1
Psat6g044480 Pisum sativum HOM05D007681 ORTHO05D009734 4.0e-24 115.5 184 41.8
BcaC03g17055 Brassica carinata HOM05D007681 ORTHO05D009734 6.7e-24 114.8 160 43.8
CARHR144140 Cardamine hirsuta HOM05D007681 ORTHO05D009734 6.7e-24 114.8 173 42.8
Glyma.07G166400 Glycine max HOM05D007681 ORTHO05D009734 8.8e-24 114.4 173 42.2
Hma1.2p1_0330F.1_g127440 Hydrangea macrophylla HOM05D007681 ORTHO05D009734 8.8e-24 114.4 179 45.8
Lsat_1_v5_gn_8_44280 Lactuca sativa HOM05D007681 ORTHO05D009734 8.8e-24 114.4 162 44.4
BcaB07g30389 Brassica carinata HOM05D007681 ORTHO05D009734 1.5e-23 113.6 161 45.3
C02p49750 Brassica napus HOM05D007681 ORTHO05D009734 1.5e-23 113.6 160 43.1
Lj2g0022739 Lotus japonicus HOM05D007681 ORTHO05D009734 1.5e-23 113.6 146 44.5
Nitab4.5_0001343g0010 Nicotiana tabacum HOM05D007681 ORTHO05D009734 2.6e-23 112.8 175 40.6
Aa31LG2G8310 Aethionema arabicum HOM05D007681 ORTHO05D009734 3.3e-23 112.5 171 42.7
CsaV3_5G014700 Cucumis sativus L. HOM05D007681 ORTHO05D009734 3.3e-23 112.5 151 42.4
A02p32170 Brassica napus HOM05D007681 ORTHO05D009734 1.3e-22 110.5 160 42.5
Lalb_Chr10g0095991 Lupinus albus HOM05D007681 ORTHO05D009734 1.7e-22 110.2 178 41.6
AL5G10680 Arabidopsis lyrata HOM05D007681 ORTHO05D009734 2.2e-22 109.8 175 42.3
Sed0010427 Sechium edule HOM05D007681 ORTHO05D009734 2.2e-22 109.8 161 42.9
AT2G01590 Arabidopsis thaliana HOM05D007681 ORTHO05D009734 4.8e-22 108.6 179 41.9
BraA02t08231Z Brassica rapa HOM05D007681 ORTHO05D009734 4.8e-22 108.6 167 40.1
FvH4_4g34062 Fragaria vesca HOM05D007681 ORTHO05D009734 6.3e-22 108.2 176 42.0
Lj5g0022624 Lotus japonicus HOM05D007681 ORTHO05D009734 1.1e-21 107.5 180 41.7
Ca_12590_v3 Cicer arietinum L. HOM05D007681 ORTHO05D009734 1.4e-21 107.1 177 40.1
MD13G1021700 Malus domestica HOM05D007681 ORTHO05D009734 1.4e-21 107.1 179 40.2
Thhalv10005039m.g Eutrema salsugineum HOM05D007681 ORTHO05D009734 2.4e-21 106.3 175 43.4
FAN22G1679 Fragaria x ananassa HOM05D007681 ORTHO05D009734 2.4e-21 106.3 137 46.0
Nitab4.5_0012949g0010 Nicotiana tabacum HOM05D007681 ORTHO05D009734 2.4e-21 106.3 172 39.5
Carub.0005s0053 Capsella rubella HOM05D007681 ORTHO05D009734 3.1e-21 105.9 180 42.8
Nn3g18293 Nelumbo nucifera HOM05D007681 ORTHO05D009734 3.1e-21 105.9 108 49.1
RcHm_v2.0_Chr4g0443571 Rosa chinensis HOM05D007681 ORTHO05D009734 3.1e-21 105.9 180 41.7
TAR629G0584 Trochodendron aralioides HOM05D007681 ORTHO05D009734 4.1e-21 105.5 173 41.0
GSVIVG01011705001 Vitis vinifera HOM05D007681 ORTHO05D009734 9.1e-21 104.4 160 42.5
EL10Ac1g01492 Beta vulgaris HOM05D007681 ORTHO05D009734 1.6e-20 103.6 146 41.1
FAN17G1502 Fragaria x ananassa HOM05D007681 ORTHO05D009734 1.6e-20 103.6 179 40.8
CANSAT01G2988 Cannabis sativa HOM05D007681 ORTHO05D009734 2.6e-20 102.8 174 36.8
ClCG07G005970 Citrullus lanatus HOM05D007681 ORTHO05D009734 5.9e-20 101.7 171 39.8
Phvul.003G022100 Phaseolus vulgaris HOM05D007681 ORTHO05D009734 1.0e-19 100.9 169 39.1
PSO017G3157 Papaver somniferum HOM05D007681 ORTHO05D009734 2.2e-19 99.8 146 43.2
PSO478G3571 Papaver somniferum HOM05D007681 ORTHO05D009734 2.2e-19 99.8 147 43.5
Potri.010G110100 Populus trichocarpa HOM05D007681 ORTHO05D009734 2.2e-19 99.8 183 39.9
Rhsim09G0093700 Rhododendron simsii HOM05D007681 ORTHO05D009734 2.9e-19 99.4 104 50.0
Migut.L00587 Erythranthe guttata HOM05D007681 ORTHO05D009734 3.8e-19 99.0 166 38.0
arahy.Tifrunner.gnm1.ann1.W0FD01 Arachis hypogaea HOM05D007681 ORTHO05D009734 5.0e-19 98.6 96 54.2
HanXRQChr12g0363581 Helianthus annuus HOM05D007681 ORTHO05D009734 1.1e-18 97.4 166 42.8
arahy.Tifrunner.gnm1.ann1.2VU2GF Arachis hypogaea HOM05D007681 ORTHO05D009734 1.5e-18 97.1 73 65.8
COL.COLO4_13100 Corchorus olitorius HOM05D006947 ORTHO05D008818 5.5e-18 95.1 103 49.5
AUR62013520 Chenopodium quinoa HOM05D007681 ORTHO05D009734 2.7e-17 92.8 173 37.0
AUR62026755 Chenopodium quinoa HOM05D007681 ORTHO05D009734 4.7e-17 92.0 185 35.7
Nitab4.5_0000018g0170 Nicotiana tabacum HOM05D007681 ORTHO05D009734 4.7e-17 92.0 142 40.8
PGSC0003DMG400015899 Solanum tuberosum HOM05D007681 ORTHO05D009734 4.7e-17 92.0 146 40.4
Solyc05g026570.3 Solanum lycopersicum HOM05D007681 ORTHO05D009734 8.0e-17 91.3 153 39.2
Sopen05g023100 Solanum pennellii HOM05D007681 ORTHO05D009734 8.0e-17 91.3 153 39.2
Peaxi162Scf00376g00013 Petunia axillaris HOM05D007681 ORTHO05D009734 1.0e-16 90.9 174 39.7
MSTRG.7616 Avicennia marina HOM05D007681 ORTHO05D009734 2.3e-16 89.7 166 31.3
unitig_26.g8951 Utricularia gibba HOM05D007681 ORTHO05D009734 4.0e-16 89.0 139 38.1
Lj6A742G71 Lonicera japonica HOM05D007681 ORTHO05D009734 3.4e-15 85.9 91 48.4
Aqoxy3G00048 Aquilegia oxysepala HOM05D007681 ORTHO05D009734 5.7e-15 85.1 182 36.8
Phvul.005G062000 Phaseolus vulgaris HOM05D007681 ORTHO05D009734 2.2e-14 83.2 73 53.4
THA.LOC104805073 Tarenaya hassleriana HOM05D007681 ORTHO05D009734 4.8e-14 82.0 156 39.7
Ah.01g006360 Amaranthus hybridus HOM05D007681 ORTHO05D009734 5.4e-13 78.6 170 35.3
MBI16_g06252_MAGBIO Magnolia biondii HOM05D007681 ORTHO05D009734 1.7e-11 73.6 79 46.8
Os09g0306650 Oryza sativa ssp. japonica HOM05D007681 ORTHO05D009734 6.1e-09 65.1 131 31.3
QL03p033908 Quercus lobata HOM05D007681 ORTHO05D009734 1.0e-08 64.3 81 42.0
MELO3C026423.2 Cucumis melo HOM05D007681 ORTHO05D009734 1.7e-06 57.0 119 31.9
Zm00001eb309450 Zea mays HOM05D007681 ORTHO05D009734 2.2e-06 56.6 111 30.6
vmacro10664 Vaccinium macrocarpon HOM05D007681 ORTHO05D009734 2.8e-06 56.2 41 65.9


User provided reference genes

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