Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 2.4e-110 402.1 200 100.0
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 3.0e-84 315.5 198 73.7
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 5.1e-84 314.7 197 77.2
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 6.7e-84 314.3 197 73.1
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 4.3e-83 311.6 198 75.3
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 9.7e-83 310.5 200 74.0
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 9.7e-83 310.5 198 73.2
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 2.8e-82 308.9 198 72.2
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 2.8e-82 308.9 198 74.2
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 2.8e-82 308.9 198 73.7
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 3.7e-82 308.5 200 73.5
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 2.4e-81 305.8 197 73.1
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 3.1e-81 305.4 198 71.2
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 4.1e-81 305.1 200 73.0
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 5.3e-81 304.7 198 72.2
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 5.3e-81 304.7 197 72.1
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 1.2e-80 303.5 198 69.7
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 1.2e-80 303.5 197 72.1
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 1.5e-80 303.1 198 71.7
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 1.5e-80 303.1 198 71.7
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 2.0e-80 302.8 198 72.7
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 2.6e-80 302.4 198 71.7
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 2.6e-80 302.4 196 71.9
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 3.4e-80 302.0 196 71.9
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 5.9e-80 301.2 199 69.3
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 7.7e-80 300.8 198 68.2
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 7.7e-80 300.8 197 72.6
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 1.3e-79 300.1 198 69.2
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 1.3e-79 300.1 198 72.2
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 1.7e-79 299.7 196 70.4
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 3.8e-79 298.5 199 68.8
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 8.5e-79 297.4 198 69.7
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 1.4e-78 296.6 198 68.7
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 1.9e-78 296.2 198 70.7
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 2.5e-78 295.8 199 70.4
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 2.5e-78 295.8 197 68.0
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 3.2e-78 295.4 197 71.1
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 4.2e-78 295.0 198 70.7
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 5.5e-78 294.7 198 69.7
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 5.5e-78 294.7 196 67.9
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 5.5e-78 294.7 197 66.5
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 7.2e-78 294.3 198 70.7
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 7.2e-78 294.3 198 71.7
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 1.2e-77 293.5 198 68.7
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 1.6e-77 293.1 196 69.4
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 2.7e-77 292.4 198 68.7
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 3.6e-77 292.0 197 70.1
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 3.6e-77 292.0 197 67.0
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 3.6e-77 292.0 196 71.9
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 6.1e-77 291.2 198 71.7
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 7.9e-77 290.8 198 70.7
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 7.9e-77 290.8 198 68.2
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 1.0e-76 290.4 198 68.2
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 1.4e-76 290.0 197 70.6
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 2.3e-76 289.3 198 68.7
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 2.3e-76 289.3 198 69.2
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 3.0e-76 288.9 200 67.5
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 3.0e-76 288.9 198 66.2
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 3.9e-76 288.5 183 74.9
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 5.1e-76 288.1 198 70.7
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 5.1e-76 288.1 189 69.8
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 5.1e-76 288.1 198 67.7
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 5.1e-76 288.1 198 68.7
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 6.7e-76 287.7 198 70.7
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 1.1e-75 287.0 198 67.2
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 1.1e-75 287.0 195 66.7
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 1.5e-75 286.6 198 68.7
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 2.0e-75 286.2 183 70.5
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 2.0e-75 286.2 198 67.2
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 2.0e-75 286.2 198 65.7
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 4.4e-75 285.0 198 68.2
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 5.7e-75 284.6 197 65.5
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 7.4e-75 284.3 198 68.7
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 9.7e-75 283.9 198 67.2
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 9.7e-75 283.9 186 72.0
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 1.3e-74 283.5 198 66.2
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 1.3e-74 283.5 196 66.8
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.7e-74 283.1 198 68.7
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 1.7e-74 283.1 197 68.0
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 1.7e-74 283.1 198 67.2
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 2.2e-74 282.7 199 70.9
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 2.8e-74 282.3 199 67.3
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 2.8e-74 282.3 197 68.0
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 3.7e-74 282.0 197 65.5
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 3.7e-74 282.0 197 66.0
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 3.7e-74 282.0 198 67.2
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 4.8e-74 281.6 199 67.3
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 4.8e-74 281.6 186 71.5
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 4.8e-74 281.6 183 73.2
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 8.2e-74 280.8 198 67.2
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 1.1e-73 280.4 198 68.7
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 1.4e-73 280.0 194 69.6
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 1.8e-73 279.6 198 63.6
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 4.1e-73 278.5 198 67.2
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 4.1e-73 278.5 198 67.2
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 5.3e-73 278.1 184 69.0
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 6.9e-73 277.7 198 68.2
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 6.9e-73 277.7 198 67.2
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 1.5e-72 276.6 198 64.1
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 3.4e-72 275.4 196 66.3
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 3.4e-72 275.4 184 68.5
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 3.4e-72 275.4 184 68.5
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 3.4e-72 275.4 197 65.5
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 1.0e-71 273.9 186 70.4
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 1.0e-71 273.9 193 64.8
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 1.7e-71 273.1 187 67.4
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 3.2e-70 268.9 191 65.4
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 4.2e-70 268.5 199 64.3
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 2.1e-69 266.2 198 61.6
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 4.7e-69 265.0 178 70.8
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 1.8e-68 263.1 198 64.1
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 8.8e-68 260.8 196 64.8
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 2.0e-67 259.6 198 59.1
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 2.0e-67 259.6 199 61.8
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 3.7e-66 255.4 198 64.1
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 1.6e-64 250.0 183 65.6
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 8.5e-63 244.2 190 64.2
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 1.0e-60 237.3 183 60.1
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 3.0e-60 235.7 187 57.2
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 9.7e-59 230.7 144 72.2
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 1.3e-58 230.3 144 69.4
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 1.8e-57 226.5 164 64.0
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.1e-54 217.2 143 68.5
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 2.7e-53 212.6 169 57.4
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 3.0e-52 209.1 156 64.1
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 3.4e-51 205.7 156 60.9
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 4.4e-51 205.3 197 51.8
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 5.7e-51 204.9 187 50.8
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 1.3e-50 203.8 144 61.1
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 2.8e-50 202.6 192 51.0
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 1.2e-48 197.2 198 49.0
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 4.7e-45 185.3 98 82.7
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 5.2e-44 181.8 114 70.2
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 4.4e-43 178.7 198 50.5
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 2.2e-42 176.4 124 65.3
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 1.2e-40 170.6 198 46.0
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 2.3e-36 156.4 181 44.2
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 3.2e-33 146.0 183 44.8
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 5.6e-30 135.2 180 41.7
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 5.0e-23 112.1 67 76.1
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 1.5e-22 110.5 183 35.5
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 1.6e-21 107.1 73 58.9
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 5.2e-20 102.1 107 47.7
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 8.9e-20 101.3 120 45.0
AagrBONN_evm.TU.Sc2ySwM_344.2327 Anthoceros agrestis HOM05D004717 ORTHO05D005636 2.6e-19 99.8 106 48.1
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 3.7e-18 95.9 194 36.6
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 1.9e-17 93.6 70 58.6
AagrBONN_evm.TU.Sc2ySwM_117.4144 Anthoceros agrestis HOM05D004717 ORTHO05D005636 4.1e-17 92.4 104 48.1
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 1.7e-15 87.0 64 54.7
RhsimUnG0160700 Rhododendron simsii HOM05D004717 ORTHO05D005636 3.3e-14 82.8 58 67.2
Actinidia11311 Actinidia chinensis HOM05D004717 ORTHO05D005636 1.1e-09 67.8 43 72.1
Dinv05788 Davidia involucrata HOM05D004717 ORTHO05D005636 3.3e-06 56.2 36 72.2


User provided reference genes

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