Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 3.1e-89 332.0 202 100.0
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 5.1e-55 218.4 198 70.7
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 1.6e-53 213.4 195 67.7
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 1.4e-52 210.3 199 59.8
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 2.6e-51 206.1 195 70.8
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 7.6e-51 204.5 191 63.9
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 1.7e-50 203.4 191 63.4
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 2.2e-50 203.0 195 65.6
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 8.3e-50 201.1 191 62.8
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 1.9e-49 199.9 193 65.3
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 2.4e-49 199.5 199 65.8
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 2.4e-49 199.5 191 61.3
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 3.2e-49 199.1 191 64.4
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 5.4e-49 198.4 205 62.4
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 5.4e-49 198.4 191 63.9
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 9.2e-49 197.6 191 68.6
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 9.2e-49 197.6 198 66.2
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 2.7e-48 196.1 200 64.5
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 7.8e-48 194.5 196 66.3
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 7.8e-48 194.5 197 64.5
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 1.0e-47 194.1 195 65.6
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 2.3e-47 193.0 202 60.4
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 3.9e-47 192.2 203 63.1
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 3.9e-47 192.2 195 56.4
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 3.9e-47 192.2 202 63.9
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 5.1e-47 191.8 202 64.9
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 1.5e-46 190.3 194 65.5
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 1.5e-46 190.3 188 68.1
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 1.9e-46 189.9 205 59.5
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 2.5e-46 189.5 191 62.3
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 9.6e-46 187.6 184 63.0
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 1.6e-45 186.8 202 57.4
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 1.6e-45 186.8 197 58.4
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 1.6e-45 186.8 196 60.2
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 3.6e-45 185.7 202 61.4
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 8.1e-45 184.5 202 63.9
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 1.4e-44 183.7 196 58.2
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 1.8e-44 183.3 191 59.7
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 2.4e-44 183.0 198 57.1
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 3.1e-44 182.6 193 63.7
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 3.1e-44 182.6 196 63.3
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 4.0e-44 182.2 195 64.6
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 8.9e-44 181.0 198 56.6
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 8.9e-44 181.0 187 66.3
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 1.2e-43 180.6 204 61.8
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 2.0e-43 179.9 198 56.6
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 2.0e-43 179.9 198 58.6
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 2.6e-43 179.5 198 56.6
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 3.4e-43 179.1 194 62.9
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 9.9e-43 177.6 191 64.9
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 9.9e-43 177.6 200 56.0
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 3.8e-42 175.6 197 59.4
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 1.9e-41 173.3 201 62.7
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 3.2e-41 172.6 190 61.1
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 5.4e-41 171.8 193 63.7
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 5.4e-41 171.8 204 56.9
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 1.2e-40 170.6 191 62.3
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 1.2e-40 170.6 192 64.1
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 1.6e-40 170.2 191 62.3
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.6e-40 170.2 198 57.1
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 3.5e-40 169.1 205 60.0
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 4.6e-40 168.7 197 60.4
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 6.0e-40 168.3 195 56.4
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 1.0e-39 167.5 196 59.7
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.0e-39 167.5 190 58.4
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 1.3e-39 167.2 188 63.8
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 3.0e-39 166.0 197 55.8
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 3.9e-39 165.6 203 59.6
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 3.9e-39 165.6 202 61.9
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 8.7e-39 164.5 202 56.4
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 3.3e-38 162.5 203 59.6
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 3.3e-38 162.5 195 59.5
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 7.3e-38 161.4 200 59.5
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 9.6e-38 161.0 186 56.5
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 1.3e-37 160.6 198 58.6
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 1.3e-37 160.6 198 58.6
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 1.3e-37 160.6 198 58.6
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 2.8e-37 159.5 205 58.5
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 3.6e-37 159.1 198 58.6
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 3.6e-37 159.1 198 58.6
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 3.6e-37 159.1 197 59.9
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 4.8e-37 158.7 204 59.3
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 1.1e-36 157.5 197 55.3
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 1.8e-36 156.8 200 58.0
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 1.8e-36 156.8 193 58.5
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 2.4e-36 156.4 199 59.3
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 4.0e-36 155.6 190 60.0
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 5.3e-36 155.2 201 58.2
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 6.9e-36 154.8 200 59.5
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 9.0e-36 154.5 207 54.1
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 9.0e-36 154.5 198 59.1
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 9.0e-36 154.5 200 59.0
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 1.2e-35 154.1 192 60.4
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 3.4e-35 152.5 200 59.0
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 5.8e-35 151.8 192 59.9
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 5.8e-35 151.8 192 59.9
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 9.9e-35 151.0 200 59.0
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 9.9e-35 151.0 192 59.4
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 3.2e-33 146.0 192 58.3
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 9.3e-33 144.4 167 53.9
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 2.7e-32 142.9 196 46.4
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 1.5e-30 137.1 167 52.1
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 4.3e-30 135.6 167 51.5
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 9.6e-30 134.4 193 53.9
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 6.2e-29 131.7 135 60.0
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 8.1e-29 131.3 142 59.9
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 1.4e-28 130.6 187 46.0
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 2.4e-28 129.8 116 62.1
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 2.4e-28 129.8 191 44.5
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 6.9e-28 128.3 191 54.5
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 6.9e-28 128.3 159 59.1
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 3.4e-27 125.9 135 58.5
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 3.4e-27 125.9 196 48.0
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 7.6e-27 124.8 197 42.1
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 2.2e-26 123.2 117 59.8
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 2.9e-26 122.9 158 58.9
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 2.4e-25 119.8 132 56.1
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 7.1e-25 118.2 185 43.2
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 9.3e-25 117.9 132 53.0
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 3.5e-24 115.9 205 52.2
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 6.0e-24 115.2 133 56.4
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 2.3e-23 113.2 132 52.3
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 9.6e-22 107.8 123 49.6
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 1.2e-19 100.9 100 57.0
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 1.5e-19 100.5 114 61.4
Atru.chr5.655 Acer truncatum HOM05D000598 ORTHO05D000480 2.0e-19 100.1 134 61.9
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 1.6e-16 90.5 187 46.5
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 6.0e-16 88.6 132 43.9
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 7.4e-14 81.6 105 66.7
Psat4g074560 Pisum sativum HOM05D005729 ORTHO05D007026 1.4e-12 77.4 124 42.7
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 2.4e-12 76.6 89 49.4
Atru.chr6.2684 Acer truncatum HOM05D005729 ORTHO05D007026 3.1e-12 76.3 51 76.5
EL10Ac1g01380 Beta vulgaris HOM05D005729 ORTHO05D007026 2.2e-10 70.1 69 56.5
Psat4g074600 Pisum sativum HOM05D005729 ORTHO05D007026 5.1e-07 58.9 114 40.4


User provided reference genes

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