Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 6.7e-116 420.6 203 100.0
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 1.1e-78 297.0 212 68.9
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 1.6e-77 293.1 212 67.5
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 1.6e-77 293.1 212 67.5
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 1.6e-77 293.1 211 67.8
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 2.8e-77 292.4 205 68.8
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 4.7e-77 291.6 211 68.2
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 8.1e-77 290.8 213 70.4
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 5.2e-76 288.1 214 68.7
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 1.2e-75 287.0 204 68.1
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 3.4e-75 285.4 211 66.4
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 5.8e-75 284.6 156 85.9
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 5.8e-75 284.6 211 67.3
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 2.2e-74 282.7 208 67.3
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 4.9e-74 281.6 217 66.8
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 1.4e-73 280.0 211 65.9
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 1.9e-73 279.6 209 67.0
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 4.1e-73 278.5 215 66.0
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 4.1e-73 278.5 208 68.8
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 5.4e-73 278.1 208 67.8
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 1.2e-72 276.9 207 67.6
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 1.6e-72 276.6 200 69.5
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 4.6e-72 275.0 199 70.4
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 6.0e-72 274.6 214 64.0
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 7.8e-72 274.2 209 67.5
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 1.7e-71 273.1 146 84.9
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 3.9e-71 271.9 209 67.0
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 5.1e-71 271.6 177 74.0
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 5.1e-71 271.6 209 66.5
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 5.1e-71 271.6 208 67.3
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 6.6e-71 271.2 204 67.2
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 1.5e-70 270.0 199 65.8
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 7.3e-70 267.7 197 65.5
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 9.5e-70 267.3 219 63.5
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 1.2e-69 266.9 192 67.7
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 1.2e-69 266.9 155 76.8
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 2.8e-69 265.8 205 65.4
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 3.6e-69 265.4 145 82.1
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 3.6e-69 265.4 205 64.4
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 6.2e-69 264.6 186 67.2
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 6.2e-69 264.6 207 64.7
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 8.1e-69 264.2 205 64.9
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 8.1e-69 264.2 205 64.9
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 4.0e-68 261.9 212 63.2
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 6.8e-68 261.2 192 66.1
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 8.9e-68 260.8 149 81.2
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 1.2e-67 260.4 192 64.6
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 1.2e-67 260.4 146 82.2
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 3.4e-67 258.8 153 78.4
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 4.4e-67 258.5 207 63.3
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 5.8e-67 258.1 148 77.7
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 7.6e-67 257.7 194 68.0
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 7.6e-67 257.7 148 77.7
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 9.9e-67 257.3 189 65.6
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 1.3e-66 256.9 151 78.8
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 1.3e-66 256.9 153 77.8
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 1.3e-66 256.9 202 65.8
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 1.3e-66 256.9 168 73.8
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 2.2e-66 256.1 191 63.4
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 2.2e-66 256.1 206 65.5
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 4.9e-66 255.0 148 75.7
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 8.4e-66 254.2 148 77.0
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 1.1e-65 253.8 232 56.0
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 1.1e-65 253.8 148 75.7
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 1.9e-65 253.1 189 63.5
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 1.9e-65 253.1 153 77.8
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 1.9e-65 253.1 145 82.1
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 2.4e-65 252.7 188 64.4
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 2.4e-65 252.7 188 64.4
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 2.4e-65 252.7 152 75.7
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 2.4e-65 252.7 146 79.5
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 3.2e-65 252.3 144 79.2
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 4.1e-65 251.9 152 75.7
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 5.4e-65 251.5 145 78.6
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 7.1e-65 251.1 202 65.3
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 7.1e-65 251.1 190 63.2
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 1.2e-64 250.4 154 75.3
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 1.6e-64 250.0 172 70.3
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 6.0e-64 248.1 147 76.9
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 3.0e-63 245.7 175 66.9
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 8.6e-63 244.2 171 69.0
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 1.1e-62 243.8 196 65.8
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 8.1e-61 237.7 196 62.8
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 1.2e-59 233.8 168 67.9
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 3.8e-58 228.8 180 65.0
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 3.8e-58 228.8 126 81.7
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 4.9e-58 228.4 124 83.1
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 1.1e-57 227.3 179 66.5
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 1.4e-57 226.9 197 61.4
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 4.2e-57 225.3 193 58.0
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 7.1e-57 224.6 205 59.0
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 7.1e-57 224.6 205 59.0
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 2.1e-56 223.0 185 61.6
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 1.7e-55 219.9 209 57.9
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 3.3e-54 215.7 190 58.9
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 4.3e-54 215.3 124 78.2
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 5.6e-54 214.9 124 79.8
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 3.6e-53 212.2 155 67.1
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 4.0e-52 208.8 142 64.8
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 9.0e-52 207.6 148 68.2
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 4.4e-51 205.3 154 65.6
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 6.0e-48 194.9 188 53.2
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 7.9e-48 194.5 139 61.2
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 2.3e-47 193.0 113 81.4
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 3.0e-47 192.6 143 63.6
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 7.3e-46 188.0 143 62.9
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 2.1e-45 186.4 153 61.4
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 2.1e-45 186.4 110 79.1
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 2.1e-45 186.4 100 82.0
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 1.4e-44 183.7 129 69.0
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 1.8e-44 183.3 139 60.4
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 1.8e-44 183.3 101 82.2
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 1.8e-44 183.3 148 58.8
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 5.3e-44 181.8 199 48.7
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 9.0e-44 181.0 99 81.8
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 3.8e-42 175.6 112 68.8
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 1.1e-41 174.1 109 69.7
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 7.1e-41 171.4 123 65.0
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 7.1e-41 171.4 123 65.0
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 9.3e-41 171.0 133 59.4
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 8.1e-37 157.9 176 48.9
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 2.9e-34 149.4 99 62.6
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 3.2e-33 146.0 120 60.0
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 2.1e-29 133.3 143 43.4
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 3.1e-28 129.4 130 56.9
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 6.9e-28 128.3 103 65.0
arahy.Tifrunner.gnm1.ann1.C5A6Z1 Arachis hypogaea HOM05D005182 ORTHO05D006631 1.2e-27 127.5 117 56.4
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 3.4e-27 125.9 103 64.1
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 1.7e-26 123.6 77 70.1
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 2.9e-26 122.9 68 82.4
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 2.9e-26 122.9 88 67.0
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 8.4e-26 121.3 74 73.0
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 2.2e-21 106.7 85 65.9
Hund04415 Selenicereus undatus HOM05D005182 ORTHO05D006631 4.8e-21 105.5 63 74.6
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 1.4e-20 104.0 90 52.2
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 6.9e-20 101.7 56 82.1
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 1.2e-19 100.9 61 75.4
Ah.15g100150 Amaranthus hybridus HOM05D008863 ORTHO05D006631 2.6e-19 99.8 63 65.1
Cpa.g.c30633.2 Carica papaya HOM05D005182 ORTHO05D006631 1.9e-17 93.6 58 72.4
RcHm_v2.0_Chr7g0228061 Rosa chinensis HOM05D005182 ORTHO05D006631 4.2e-17 92.4 81 58.0
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 2.7e-16 89.7 80 50.0
Zm00001eb085260 Zea mays HOM05D005182 ORTHO05D006631 1.4e-12 77.4 48 77.1
RcHm_v2.0_Chr7g0228091 Rosa chinensis HOM05D005182 ORTHO05D344069 1.0e-07 61.2 96 37.5
Dinv33459 Davidia involucrata HOM05D005182 ORTHO05D006631 1.4e-07 60.8 33 78.8


User provided reference genes

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