Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10016724m.g Citrus clementina HOM05D005581 ORTHO05D006792 3.3e-118 428.3 208 100.0
Ciclev10012718m.g Citrus clementina HOM05D005581 ORTHO05D006792 6.5e-98 360.9 206 85.0
Potri.001G470300 Populus trichocarpa HOM05D005581 ORTHO05D006792 4.1e-84 315.1 190 77.9
Hma1.2p1_1975F.1_g309690 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 7.0e-84 314.3 190 78.4
Sc06g0002610 Simmondsia chinensis HOM05D005581 ORTHO05D006792 1.6e-83 313.2 203 72.4
GSVIVG01032543001 Vitis vinifera HOM05D005581 ORTHO05D006792 1.0e-82 310.5 193 77.7
COL.COLO4_06153 Corchorus olitorius HOM05D000793 ORTHO05D000783 2.9e-82 308.9 193 74.6
Dinv33676 Davidia involucrata HOM05D005581 ORTHO05D006792 2.9e-82 308.9 192 74.5
Sabra16G0319200 Salix brachista HOM05D005581 ORTHO05D006792 3.8e-82 308.5 208 73.1
Manes.15G178800 Manihot esculenta HOM05D005581 ORTHO05D006792 8.5e-82 307.4 194 76.3
Duzib187G0556 Durio zibethinus HOM05D005581 ORTHO05D006792 1.5e-81 306.6 192 77.6
TAR629G0716 Trochodendron aralioides HOM05D005581 ORTHO05D006792 4.2e-81 305.1 189 75.7
Actinidia36059 Actinidia chinensis HOM05D005581 ORTHO05D006792 5.5e-81 304.7 194 75.3
Thecc.04G002800 Theobroma cacao HOM05D005581 ORTHO05D006792 2.1e-80 302.8 193 73.6
CSS0034562 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 2.7e-80 302.4 182 77.5
CSS0041908 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 2.7e-80 302.4 182 77.5
Gorai.001G259000 Gossypium raimondii HOM05D005581 ORTHO05D006792 4.7e-80 301.6 203 70.0
Prupe.3G278300 Prunus persica HOM05D005581 ORTHO05D006792 8.0e-80 300.8 206 70.4
Actinidia06044 Actinidia chinensis HOM05D005581 ORTHO05D006792 1.4e-79 300.1 191 74.9
Duzib147G0516 Durio zibethinus HOM05D005581 ORTHO05D006792 1.4e-79 300.1 197 72.1
Nn3g17019 Nelumbo nucifera HOM05D005581 ORTHO05D006792 1.8e-79 299.7 187 75.4
Oeu062376.1 Olea europaea HOM05D005581 ORTHO05D006792 4.0e-79 298.5 189 74.1
Hund12510 Selenicereus undatus HOM05D005581 ORTHO05D006792 5.2e-79 298.1 194 72.2
Gohir.D07G224600 Gossypium hirsutum HOM05D005581 ORTHO05D006792 6.7e-79 297.7 192 74.0
Lj2g0014392 Lotus japonicus HOM05D005581 ORTHO05D006792 1.2e-78 297.0 202 68.3
Cfa007475 Carpinus fangiana HOM05D005581 ORTHO05D006792 1.5e-78 296.6 206 68.9
Gohir.A07G217500 Gossypium hirsutum HOM05D005581 ORTHO05D006792 2.0e-78 296.2 192 73.4
RhsimUnG0168100 Rhododendron simsii HOM05D005581 ORTHO05D006792 2.6e-78 295.8 201 71.1
QL02p078462 Quercus lobata HOM05D005581 ORTHO05D006792 3.3e-78 295.4 191 73.8
EL10Ac7g18001 Beta vulgaris HOM05D005581 ORTHO05D006792 5.7e-78 294.7 229 65.5
Peaxi162Scf00129g00828 Petunia axillaris HOM05D000793 ORTHO05D000783 5.7e-78 294.7 200 68.0
Nitab4.5_0004905g0030 Nicotiana tabacum HOM05D000793 ORTHO05D006792 9.7e-78 293.9 192 71.4
PGR083G1021 Punica granatum HOM05D005581 ORTHO05D006792 9.7e-78 293.9 192 71.4
Cpa.g.sc14.80 Carica papaya HOM05D005581 ORTHO05D006792 1.3e-77 293.5 195 73.8
Nitab4.5_0007185g0080 Nicotiana tabacum HOM05D005581 ORTHO05D006792 1.3e-77 293.5 204 67.2
Oeu031508.1 Olea europaea HOM05D005581 ORTHO05D006792 1.3e-77 293.5 189 73.0
Lalb_Chr05g0228941 Lupinus albus HOM05D005581 ORTHO05D006792 1.7e-77 293.1 179 76.0
Gohir.A05G361700 Gossypium hirsutum HOM05D005581 ORTHO05D006792 2.2e-77 292.7 197 70.6
Glyma.13G116200 Glycine max HOM05D005581 ORTHO05D006792 2.8e-77 292.4 194 69.6
PSO832G0275 Papaver somniferum HOM05D005581 ORTHO05D006792 2.8e-77 292.4 194 71.6
TPR.G39154 Trifolium pratense HOM05D005581 ORTHO05D006792 2.8e-77 292.4 198 69.7
AUR62022121 Chenopodium quinoa HOM05D005581 ORTHO05D006792 8.2e-77 290.8 198 72.7
arahy.Tifrunner.gnm1.ann1.B679M5 Arachis hypogaea HOM05D005581 ORTHO05D006792 1.1e-76 290.4 191 69.1
Eucgr.J02171 Eucalyptus grandis HOM05D005581 ORTHO05D006792 1.1e-76 290.4 190 71.6
Medtr7g030020 Medicago truncatula HOM05D005581 ORTHO05D006792 1.1e-76 290.4 195 70.3
Medtr7g038730 Medicago truncatula HOM05D005581 ORTHO05D006792 1.1e-76 290.4 195 70.3
TWI12G0742 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 2.4e-76 289.3 201 70.1
arahy.Tifrunner.gnm1.ann1.E9CGF1 Arachis hypogaea HOM05D005581 ORTHO05D006792 3.1e-76 288.9 192 70.8
arahy.Tifrunner.gnm1.ann1.UYM2HQ Arachis hypogaea HOM05D005581 ORTHO05D006792 3.1e-76 288.9 191 68.6
MSTRG.23979 Avicennia marina HOM05D005581 ORTHO05D006792 3.1e-76 288.9 194 70.6
AUR62001208 Chenopodium quinoa HOM05D005581 ORTHO05D006792 3.1e-76 288.9 201 70.1
PSO591G0467 Papaver somniferum HOM05D005581 ORTHO05D006792 3.1e-76 288.9 171 76.6
Gohir.D04G052800 Gossypium hirsutum HOM05D005581 ORTHO05D006792 4.1e-76 288.5 197 69.5
PSO063G2781 Papaver somniferum HOM05D005581 ORTHO05D006792 4.1e-76 288.5 194 70.6
arahy.Tifrunner.gnm1.ann1.2M0NJC Arachis hypogaea HOM05D005581 ORTHO05D006792 1.2e-75 287.0 192 70.8
CiPaw.04G022300 Carya illinoinensis HOM05D005581 ORTHO05D006792 1.2e-75 287.0 193 72.0
Sopen02g032000 Solanum pennellii HOM05D005581 ORTHO05D006792 1.2e-75 287.0 195 67.7
PGSC0003DMG400001392 Solanum tuberosum HOM05D005581 ORTHO05D006792 1.2e-75 287.0 199 67.8
Lj2g0006948 Lotus japonicus HOM05D005581 ORTHO05D006792 1.6e-75 286.6 166 77.7
Solyc02g087250.4 Solanum lycopersicum HOM05D000793 ORTHO05D000783 1.6e-75 286.6 195 67.7
CAN.G206.63 Capsicum annuum HOM05D005581 ORTHO05D006792 3.5e-75 285.4 192 69.3
Atru.BG.224.p Acer truncatum HOM05D005581 ORTHO05D006792 4.5e-75 285.0 165 81.2
VMungo1215G0614 Vigna mungo HOM05D005581 ORTHO05D006792 4.5e-75 285.0 178 73.0
Gorai.012G059200 Gossypium raimondii HOM05D005581 ORTHO05D006792 5.9e-75 284.6 194 69.6
MBI15_g35865_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 1.0e-74 283.9 196 69.9
RcHm_v2.0_Chr2g0170291 Rosa chinensis HOM05D005581 ORTHO05D006792 1.3e-74 283.5 193 70.5
Hma1.2p1_0375F.1_g139010 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 1.7e-74 283.1 182 72.0
Ca_19611_v3 Cicer arietinum L. HOM05D005581 ORTHO05D006792 2.2e-74 282.7 196 69.4
MELO3C033644.2 Cucumis melo HOM05D005581 ORTHO05D006792 2.9e-74 282.3 190 70.0
FvH4_6g50030 Fragaria vesca HOM05D005581 ORTHO05D006792 3.8e-74 282.0 192 69.3
FAN09G0871 Fragaria x ananassa HOM05D005581 ORTHO05D006792 3.8e-74 282.0 192 69.3
FAN14G0942 Fragaria x ananassa HOM05D005581 ORTHO05D006792 3.8e-74 282.0 192 69.3
ATR0624G029 Amborella trichopoda HOM05D005581 ORTHO05D006792 8.5e-74 280.8 191 68.1
FAN05G2284 Fragaria x ananassa HOM05D005581 ORTHO05D006792 1.1e-73 280.4 192 69.3
CDE06G0044 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 2.5e-73 279.3 189 66.7
MD17G1040700 Malus domestica HOM05D005581 ORTHO05D006792 3.2e-73 278.9 195 69.2
SGA_v2.0_scaffold135G34832 Striga asiatica HOM05D005581 ORTHO05D006792 5.5e-73 278.1 192 68.8
Phvul.003G125600 Phaseolus vulgaris HOM05D005581 ORTHO05D006792 1.2e-72 276.9 192 68.2
CsaV3_5G037490 Cucumis sativus L. HOM05D005581 ORTHO05D006792 1.6e-72 276.6 198 65.7
DCAR_003657 Daucus carota HOM05D005581 ORTHO05D006792 2.1e-72 276.2 196 66.3
Lalb_Chr21g0319231 Lupinus albus HOM05D005581 ORTHO05D006792 2.1e-72 276.2 203 65.5
Sed0016453 Sechium edule HOM05D005581 ORTHO05D006792 4.7e-72 275.0 185 68.1
Migut.H00163 Erythranthe guttata HOM05D005581 ORTHO05D006792 6.1e-72 274.6 194 68.6
Psat3g165640 Pisum sativum HOM05D005581 ORTHO05D006792 6.1e-72 274.6 194 67.0
Hund20033 Selenicereus undatus HOM05D005581 ORTHO05D006792 6.1e-72 274.6 197 68.0
Lsat_1_v5_gn_0_16520 Lactuca sativa HOM05D005581 ORTHO05D006792 8.0e-72 274.2 199 62.8
Aqoxy3G03110 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 5.2e-71 271.6 198 65.7
SalBow1G8695 Salvia bowleyana HOM05D005581 ORTHO05D006792 2.6e-70 269.2 181 68.5
DCAR_011192 Daucus carota HOM05D005581 ORTHO05D006792 4.4e-70 268.5 212 63.2
Carub.0003s2629 Capsella rubella HOM05D005581 ORTHO05D006792 9.8e-70 267.3 194 67.5
ECA240G2828 Erigeron canadensis HOM05D005581 ORTHO05D006792 1.3e-69 266.9 191 65.4
HPP92_026859 Vanilla planifolia HOM05D005581 ORTHO05D006792 1.7e-69 266.5 171 70.8
PSO832G2358 Papaver somniferum HOM05D005581 ORTHO05D006792 3.7e-69 265.4 200 63.0
Aqoxy3G03108 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 8.3e-69 264.2 167 71.3
SHI25585 Sapria himalayana HOM05D005581 ORTHO05D006792 1.8e-68 263.1 192 65.1
Os06g0238300 Oryza sativa ssp. japonica HOM05D005581 ORTHO05D006792 5.4e-68 261.5 172 67.4
EL10Ac7g18000 Beta vulgaris HOM05D005581 ORTHO05D006792 1.2e-67 260.4 205 63.9
TWI12G0286 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 4.5e-67 258.5 191 67.0
ClCG00G001710 Citrullus lanatus HOM05D005581 ORTHO05D006792 5.9e-67 258.1 214 59.3
ClCG09G018630 Citrullus lanatus HOM05D005581 ORTHO05D006792 5.9e-67 258.1 214 59.3
AT2G04690 Arabidopsis thaliana HOM05D005581 ORTHO05D006792 7.7e-67 257.7 170 71.2
AL3G42310 Arabidopsis lyrata HOM05D005581 ORTHO05D006792 1.3e-66 256.9 171 70.8
CARHR102620 Cardamine hirsuta HOM05D005581 ORTHO05D006792 2.3e-66 256.1 169 70.4
Zm00001eb279970 Zea mays HOM05D005581 ORTHO05D006792 2.3e-66 256.1 170 65.3
Lj7A408G12 Lonicera japonica HOM05D005581 ORTHO05D006792 1.1e-65 253.8 145 77.2
vmacro05787 Vaccinium macrocarpon HOM05D005581 ORTHO05D006792 7.2e-65 251.1 152 77.6
THA.LOC104823921 Tarenaya hassleriana HOM05D005581 ORTHO05D006792 1.5e-62 243.4 200 59.0
Thhalv10027934m.g Eutrema salsugineum HOM05D005581 ORTHO05D006792 2.6e-62 242.7 169 67.5
Sp7g01930 Schrenkiella parvula HOM05D005581 ORTHO05D006792 1.4e-60 236.9 171 64.3
SEGI_16176 Sequoiadendron giganteum HOM05D005581 ORTHO05D006792 1.4e-60 236.9 165 63.6
BcaB06g27424 Brassica carinata HOM05D005581 ORTHO05D006792 2.4e-60 236.1 200 57.0
C04p46650 Brassica napus HOM05D005581 ORTHO05D006792 1.6e-59 233.4 200 59.5
BolC4t26253H Brassica oleracea HOM05D005581 ORTHO05D006792 1.6e-59 233.4 200 59.5
MD09G1040100 Malus domestica HOM05D005581 ORTHO05D006792 1.6e-59 233.4 302 44.4
BraA04t16955Z Brassica rapa HOM05D005581 ORTHO05D006792 7.8e-59 231.1 200 58.5
A04p12950 Brassica napus HOM05D005581 ORTHO05D006792 1.3e-58 230.3 200 58.5
Atru.chr8.2410 Acer truncatum HOM05D005581 ORTHO05D006792 2.9e-58 229.2 128 80.5
Psat3g011960 Pisum sativum HOM05D005581 ORTHO05D006792 1.7e-53 213.4 141 73.8
AagrBONN_evm.TU.Sc2ySwM_368.1768 Anthoceros agrestis HOM05D005581 ORTHO05D006792 1.4e-52 210.3 166 60.2
Cc07_g02660 Coffea canephora HOM05D005581 ORTHO05D006792 1.9e-52 209.9 158 67.1
Aa31LG9G1540 Aethionema arabicum HOM05D005581 ORTHO05D006792 7.0e-52 208.0 154 69.5
SMO356G0730 Selaginella moellendorffii HOM05D005581 ORTHO05D006792 7.0e-52 208.0 166 58.4
Mapoly0035s0056 Marchantia polymorpha HOM05D005581 ORTHO05D006792 3.9e-50 202.2 168 52.4
Haze_14640 Corylus avellana HOM05D005581 ORTHO05D006792 4.4e-46 188.7 141 66.7
Pp3c1_40840 Physcomitrium patens HOM05D005581 ORTHO05D006792 7.8e-43 177.9 197 45.2
CBR_g36833 Chara braunii HOM05D005581 ORTHO05D006792 8.1e-40 167.9 173 48.0
MSTRG.21916 Avicennia marina HOM05D005581 ORTHO05D006792 1.1e-39 167.5 168 53.6
Migut.N00270 Erythranthe guttata HOM05D005581 ORTHO05D006792 8.3e-37 157.9 176 48.9
Migut.H00166 Erythranthe guttata HOM05D005581 ORTHO05D006792 2.1e-35 153.3 193 44.0
PRCOL_00005184 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 3.0e-34 149.4 169 43.2
Migut.H00162 Erythranthe guttata HOM05D005581 ORTHO05D006792 5.1e-34 148.7 158 48.1
Glyma.17G043600 Glycine max HOM05D005581 ORTHO05D006792 1.7e-29 133.7 77 74.0
Cre10.g440700 Chlamydomonas reinhardtii HOM05D005581 ORTHO05D006792 5.1e-26 122.1 230 31.3
SalBow3G2496 Salvia bowleyana HOM05D005581 ORTHO05D006792 1.9e-25 120.2 169 38.5
HPP92_018422 Vanilla planifolia HOM05D005581 ORTHO05D006792 2.4e-20 103.2 61 68.9
PRCOL_00002387 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 5.1e-18 95.5 179 34.6
CDE06G0755 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 1.2e-14 84.3 61 68.9
HanXRQChr17g0548091 Helianthus annuus HOM05D005581 ORTHO05D006792 7.6e-14 81.6 58 56.9
arahy.Tifrunner.gnm1.ann1.C3UJQ4 Arachis hypogaea HOM05D005581 ORTHO05D006792 3.5e-11 72.8 71 52.1
MBI15_g46244_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 1.9e-09 67.0 66 62.1
Cre02.g098250 Chlamydomonas reinhardtii HOM05D006013 ORTHO05D007383 2.0e-06 57.0 191 29.8


User provided reference genes

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