Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10016618m.g Citrus clementina HOM05D005256 ORTHO05D006491 2.5e-71 272.7 144 100.0
Atru.chr10.203 Acer truncatum HOM05D005256 ORTHO05D006491 5.0e-56 221.9 142 83.8
QL11p010746 Quercus lobata HOM05D005256 ORTHO05D006491 2.5e-55 219.5 146 80.8
Nn1g09867 Nelumbo nucifera HOM05D005256 ORTHO05D006491 3.6e-54 215.7 143 80.4
Haze_05185 Corylus avellana HOM05D005256 ORTHO05D006491 1.0e-53 214.2 137 83.2
TAR624G1249 Trochodendron aralioides HOM05D005256 ORTHO05D006491 3.4e-52 209.1 141 79.4
Dinv07938 Davidia involucrata HOM05D005256 ORTHO05D006491 3.7e-51 205.7 141 78.0
Dinv18415 Davidia involucrata HOM05D005256 ORTHO05D006491 3.7e-51 205.7 141 78.0
MD05G1242300 Malus domestica HOM05D005256 ORTHO05D006491 1.1e-50 204.1 142 78.9
CiPaw.09G140800 Carya illinoinensis HOM05D005256 ORTHO05D006491 1.4e-50 203.8 137 79.6
Eucgr.D00001 Eucalyptus grandis HOM05D005256 ORTHO05D006491 1.8e-50 203.4 144 76.4
Lj6g0014214 Lotus japonicus HOM05D005256 ORTHO05D006491 9.1e-50 201.1 141 77.3
CSS0021462 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 1.2e-49 200.7 141 75.9
Glyma.09G047200 Glycine max HOM05D005256 ORTHO05D006491 2.0e-49 199.9 144 77.8
MBI07_g44405_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 2.0e-49 199.9 141 75.2
TPR.G31382 Trifolium pratense HOM05D005256 ORTHO05D006491 2.0e-49 199.9 140 77.1
Potri.003G157100 Populus trichocarpa HOM05D005256 ORTHO05D006491 2.7e-49 199.5 140 75.7
Rhsim13G0136300 Rhododendron simsii HOM05D005256 ORTHO05D006491 2.7e-49 199.5 144 73.6
Glyma.15G154700 Glycine max HOM05D005256 ORTHO05D006491 3.5e-49 199.1 140 79.3
Sabra03G0114000 Salix brachista HOM05D005256 ORTHO05D006491 5.9e-49 198.4 140 75.7
Lalb_Chr18g0051841 Lupinus albus HOM05D005256 ORTHO05D006491 1.0e-48 197.6 142 76.8
Sabra01G0052200 Salix brachista HOM05D005256 ORTHO05D006491 1.3e-48 197.2 141 75.9
FvH4_3g13370 Fragaria vesca HOM05D005256 ORTHO05D006491 1.7e-48 196.8 144 72.2
FAN11G1371 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.7e-48 196.8 144 72.2
Phvul.009G245700 Phaseolus vulgaris HOM05D005256 ORTHO05D006491 1.7e-48 196.8 144 74.3
Psat1g152160 Pisum sativum HOM05D005256 ORTHO05D006491 1.7e-48 196.8 142 74.6
TWI63G0333 Tripterygium wilfordii HOM05D005256 ORTHO05D006491 1.7e-48 196.8 147 74.1
MD10G1224100 Malus domestica HOM05D005256 ORTHO05D006491 2.2e-48 196.4 142 76.1
Medtr2g437530 Medicago truncatula HOM05D005256 ORTHO05D006491 2.2e-48 196.4 144 75.0
CSS0003949 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 3.8e-48 195.7 136 75.7
GSVIVG01001340001 Vitis vinifera HOM05D005256 ORTHO05D006491 3.8e-48 195.7 136 78.7
EL10Ac7g17298 Beta vulgaris HOM05D005256 ORTHO05D006491 5.0e-48 195.3 140 72.9
FAN16G0515 Fragaria x ananassa HOM05D005256 ORTHO05D006491 5.0e-48 195.3 141 73.0
FAN21G0853 Fragaria x ananassa HOM05D005256 ORTHO05D006491 5.0e-48 195.3 144 71.5
Manes.16G060225 Manihot esculenta HOM05D005256 ORTHO05D006491 5.0e-48 195.3 135 77.0
Potri.001G073900 Populus trichocarpa HOM05D005256 ORTHO05D006491 6.5e-48 194.9 141 73.8
Peaxi162Scf00888g00114 Petunia axillaris HOM05D005256 ORTHO05D006491 8.5e-48 194.5 140 73.6
TAR626G1126 Trochodendron aralioides HOM05D005256 ORTHO05D006491 1.5e-47 193.7 133 78.9
FAN25G1093 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.9e-47 193.4 144 70.8
Lalb_Chr15g0083621 Lupinus albus HOM05D005256 ORTHO05D006491 1.9e-47 193.4 142 75.4
Ah.15g091820 Amaranthus hybridus HOM05D005256 ORTHO05D006491 2.5e-47 193.0 140 73.6
Nitab4.5_0004778g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 2.5e-47 193.0 142 71.8
vmacro03574 Vaccinium macrocarpon HOM05D005256 ORTHO05D006491 4.2e-47 192.2 141 73.8
RcHm_v2.0_Chr5g0022081 Rosa chinensis HOM05D005256 ORTHO05D006491 5.5e-47 191.8 141 73.8
Oeu005126.1 Olea europaea HOM05D005256 ORTHO05D006491 7.2e-47 191.4 142 73.9
Cpa.g.sc30.65 Carica papaya HOM05D005256 ORTHO05D006491 9.5e-47 191.0 139 73.4
VMungo1309G1298 Vigna mungo HOM05D005256 ORTHO05D006491 9.5e-47 191.0 135 77.8
arahy.Tifrunner.gnm1.ann1.QDE700 Arachis hypogaea HOM05D005256 ORTHO05D006491 1.2e-46 190.7 140 73.6
arahy.Tifrunner.gnm1.ann1.98CSRD Arachis hypogaea HOM05D005256 ORTHO05D006491 1.6e-46 190.3 137 75.2
AUR62040985 Chenopodium quinoa HOM05D005256 ORTHO05D006491 2.1e-46 189.9 140 75.0
Hma1.2p1_0082F.1_g042560 Hydrangea macrophylla HOM05D005256 ORTHO05D006491 2.1e-46 189.9 141 71.6
Prupe.4G121100 Prunus persica HOM05D005256 ORTHO05D006491 2.7e-46 189.5 137 76.6
COL.COLO4_25022 Corchorus olitorius HOM05D005256 ORTHO05D006491 3.6e-46 189.1 135 75.6
CAN.G465.5 Capsicum annuum HOM05D005256 ORTHO05D006491 1.4e-45 187.2 137 73.0
Solyc10g005100.3 Solanum lycopersicum HOM05D005256 ORTHO05D006491 1.8e-45 186.8 145 69.0
Sopen10g001120 Solanum pennellii HOM05D005256 ORTHO05D006491 1.8e-45 186.8 145 69.0
PGSC0003DMG400011293 Solanum tuberosum HOM05D005256 ORTHO05D006491 6.8e-45 184.9 146 67.8
CiPaw.10G108500 Carya illinoinensis HOM05D005256 ORTHO05D006491 1.2e-44 184.1 137 71.5
ATR0737G015 Amborella trichopoda HOM05D005256 ORTHO05D006491 1.5e-44 183.7 140 72.1
Ca_02405_v3 Cicer arietinum L. HOM05D005256 ORTHO05D006491 1.5e-44 183.7 141 70.9
Sc17g0004300 Simmondsia chinensis HOM05D005256 ORTHO05D006491 3.4e-44 182.6 141 70.9
CANSAT35G0328 Cannabis sativa HOM05D005256 ORTHO05D006491 4.4e-44 182.2 140 69.3
THA.LOC104812925 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 4.4e-44 182.2 143 69.9
Aa31LG6G2690 Aethionema arabicum HOM05D005256 ORTHO05D006491 9.8e-44 181.0 140 68.6
AT4G20260 Arabidopsis thaliana HOM05D005256 ORTHO05D006491 9.8e-44 181.0 140 72.1
FAN25G0981 Fragaria x ananassa HOM05D005256 ORTHO05D006491 9.8e-44 181.0 144 68.8
Lsat_1_v5_gn_2_59820 Lactuca sativa HOM05D005256 ORTHO05D006491 1.3e-43 180.6 137 70.8
Oeu052922.1 Olea europaea HOM05D005256 ORTHO05D006491 1.3e-43 180.6 142 68.3
THA.LOC104811953 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 2.2e-43 179.9 142 70.4
Thhalv10026094m.g Eutrema salsugineum HOM05D005256 ORTHO05D006491 4.9e-43 178.7 140 69.3
AL7G33640 Arabidopsis lyrata HOM05D005256 ORTHO05D006491 6.3e-43 178.3 140 70.7
Carub.0007s2091 Capsella rubella HOM05D005256 ORTHO05D006491 6.3e-43 178.3 140 69.3
HPP92_008810 Vanilla planifolia HOM05D005256 ORTHO05D006491 8.3e-43 177.9 132 72.7
BcaC09g51326 Brassica carinata HOM05D005256 ORTHO05D006491 2.4e-42 176.4 140 70.0
A01p11960 Brassica napus HOM05D005256 ORTHO05D006491 2.4e-42 176.4 140 70.0
C01p14230 Brassica napus HOM05D005256 ORTHO05D006491 2.4e-42 176.4 140 70.0
BolC1t01388H Brassica oleracea HOM05D005256 ORTHO05D006491 2.4e-42 176.4 140 70.0
BraA01t01138Z Brassica rapa HOM05D005256 ORTHO05D006491 2.4e-42 176.4 140 70.0
Thecc.02G000700 Theobroma cacao HOM05D005256 ORTHO05D006491 2.4e-42 176.4 128 73.4
CARHR227090 Cardamine hirsuta HOM05D005256 ORTHO05D006491 3.1e-42 176.0 140 70.0
BraA03t14315Z Brassica rapa HOM05D005256 ORTHO05D006491 4.1e-42 175.6 140 68.6
Hund20133 Selenicereus undatus HOM05D005256 ORTHO05D006491 5.4e-42 175.3 140 67.1
CDE10G0480 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 7.0e-42 174.9 137 69.3
C07p50830 Brassica napus HOM05D005256 ORTHO05D006491 2.0e-41 173.3 140 67.9
BolC7t45581H Brassica oleracea HOM05D005256 ORTHO05D006491 2.0e-41 173.3 140 67.9
MBI06_g04184_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 2.0e-41 173.3 140 65.7
CDE10G1097 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 2.7e-41 172.9 137 68.6
Lsat_1_v5_gn_8_107621 Lactuca sativa HOM05D005256 ORTHO05D006491 2.7e-41 172.9 133 69.9
BcaC06g30648 Brassica carinata HOM05D005256 ORTHO05D006491 4.5e-41 172.2 140 67.1
A03p52380 Brassica napus HOM05D005256 ORTHO05D006491 4.5e-41 172.2 140 67.1
BcaNung03497 Brassica carinata HOM05D005256 ORTHO05D006491 1.0e-40 171.0 140 67.1
CDE02G1470 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 1.7e-40 170.2 143 66.4
Sp7g18620 Schrenkiella parvula HOM05D005256 ORTHO05D006491 2.3e-40 169.9 140 67.1
ECA232G1901 Erigeron canadensis HOM05D005256 ORTHO05D006491 1.1e-39 167.5 133 68.4
MSTRG.14820 Avicennia marina HOM05D005256 ORTHO05D006491 1.9e-39 166.8 140 66.4
HanXRQChr15g0487481 Helianthus annuus HOM05D005256 ORTHO05D006491 2.5e-39 166.4 133 66.2
ECA238G2220 Erigeron canadensis HOM05D005256 ORTHO05D006491 5.6e-39 165.2 133 68.4
Migut.L00006 Erythranthe guttata HOM05D005256 ORTHO05D006491 9.5e-39 164.5 133 66.9
Peaxi162Scf01310g00311 Petunia axillaris HOM05D005256 ORTHO05D006491 4.7e-38 162.2 137 63.5
SalBow7G1744 Salvia bowleyana HOM05D005256 ORTHO05D006491 8.0e-38 161.4 134 64.9
HanXRQChr14g0439031 Helianthus annuus HOM05D005256 ORTHO05D006491 1.0e-37 161.0 144 61.1
PSO541G2657 Papaver somniferum HOM05D005256 ORTHO05D006491 1.0e-37 161.0 135 63.7
PSO675G8904 Papaver somniferum HOM05D005256 ORTHO05D006491 1.0e-37 161.0 135 63.7
BcaNung03716 Brassica carinata HOM05D005256 ORTHO05D006491 2.3e-37 159.8 136 68.4
AUR62042105 Chenopodium quinoa HOM05D005256 ORTHO05D006491 1.2e-36 157.5 142 66.2
Cc09_g04590 Coffea canephora HOM05D005256 ORTHO05D006491 3.4e-36 156.0 134 63.4
CDE09G1225 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 7.5e-36 154.8 143 60.8
BcaC06g34533 Brassica carinata HOM05D005256 ORTHO05D006491 8.3e-35 151.4 153 58.8
Os02g0285300 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 1.1e-34 151.0 145 59.3
A06p47070 Brassica napus HOM05D005256 ORTHO05D006491 1.4e-34 150.6 153 58.2
C07p27480 Brassica napus HOM05D005256 ORTHO05D006491 1.4e-34 150.6 132 63.6
BraA06t27579Z Brassica rapa HOM05D005256 ORTHO05D006491 1.4e-34 150.6 153 58.2
BcaB07g30940 Brassica carinata HOM05D005256 ORTHO05D006491 1.8e-34 150.2 140 58.6
BcaC04g21824 Brassica carinata HOM05D005256 ORTHO05D006491 1.8e-34 150.2 140 58.6
C09p27010 Brassica napus HOM05D005256 ORTHO05D006491 1.8e-34 150.2 140 58.6
BolC9t55584H Brassica oleracea HOM05D005256 ORTHO05D006491 1.8e-34 150.2 140 58.6
BcaB07g30517 Brassica carinata HOM05D005256 ORTHO05D006491 3.2e-34 149.4 142 62.0
BolC7t43278H Brassica oleracea HOM05D005256 ORTHO05D006491 7.0e-34 148.3 132 62.9
Aa31LG9G8540 Aethionema arabicum HOM05D005256 ORTHO05D006491 9.2e-34 147.9 140 60.0
A09p21180 Brassica napus HOM05D005256 ORTHO05D006491 9.2e-34 147.9 140 57.9
BraA09t37724Z Brassica rapa HOM05D005256 ORTHO05D006491 9.2e-34 147.9 140 57.9
Nitab4.5_0000217g0040 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.2e-33 147.5 137 61.3
HanXRQChr09g0257711 Helianthus annuus HOM05D005256 ORTHO05D006491 3.5e-33 146.0 133 60.9
Nitab4.5_0012748g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.3e-32 144.1 105 74.3
Sp2g09430 Schrenkiella parvula HOM05D005256 ORTHO05D006491 5.6e-31 138.7 153 54.2
Nitab4.5_0001253g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 4.0e-29 132.5 137 57.7
DCAR_003732 Daucus carota HOM05D005256 ORTHO05D006491 3.4e-28 129.4 133 54.9
Zm00001eb339340 Zea mays HOM05D005256 ORTHO05D006491 1.1e-26 124.4 142 53.5
C02p45090 Brassica napus HOM05D005256 ORTHO05D006491 1.9e-26 123.6 142 56.3
BolC2t10548H Brassica oleracea HOM05D005256 ORTHO05D006491 1.9e-26 123.6 142 56.3
MBI06_g26562_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 5.4e-26 122.1 98 64.3
Zm00001eb236850 Zea mays HOM05D005256 ORTHO05D006491 2.7e-25 119.8 112 61.6
Os01g0233000 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 3.9e-24 115.9 139 50.4
Zm00001eb119130 Zea mays HOM05D005256 ORTHO05D006491 8.6e-24 114.8 134 52.2
Lalb_Chr20g0114421 Lupinus albus HOM05D005256 ORTHO05D006491 1.5e-20 104.0 72 75.0
Lsat_1_v5_gn_9_9820 Lactuca sativa HOM05D005256 ORTHO05D006491 2.6e-20 103.2 94 63.8
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 6.6e-16 88.6 69 72.5
Mapoly0087s0006 Marchantia polymorpha HOM05D005256 ORTHO05D006491 4.6e-09 65.9 141 33.3
Zm00001eb381370 Zea mays HOM05D005256 ORTHO05D006491 1.1e-07 61.2 60 58.3
FvH4_7g19390 Fragaria vesca HOM05D036880 ORTHO05D006491 7.3e-07 58.5 55 56.4


User provided reference genes

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