Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 1.7e-120 436.0 224 100.0
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 4.0e-53 212.2 161 70.8
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 5.8e-52 208.4 161 69.6
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 1.3e-51 207.2 159 69.8
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 1.7e-51 206.8 157 69.4
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 8.4e-51 204.5 158 69.6
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 2.7e-49 199.5 159 69.2
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 7.8e-49 198.0 159 66.0
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 1.3e-48 197.2 156 69.9
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.7e-48 196.8 159 66.0
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 2.3e-48 196.4 159 66.0
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 1.9e-47 193.4 154 66.2
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 2.5e-47 193.0 155 67.7
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 4.3e-47 192.2 180 60.6
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 5.6e-47 191.8 158 66.5
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 7.3e-47 191.4 158 65.2
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 1.3e-46 190.7 156 64.7
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 1.3e-46 190.7 174 60.3
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 3.6e-46 189.1 155 65.8
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 1.8e-45 186.8 155 65.2
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 1.8e-45 186.8 158 66.5
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 5.3e-45 185.3 156 62.2
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 2.0e-44 183.3 176 57.4
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 2.6e-44 183.0 154 63.6
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 2.6e-44 183.0 179 57.0
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 7.6e-44 181.4 155 64.5
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 9.9e-44 181.0 176 56.8
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 1.3e-43 180.6 159 65.4
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 2.9e-43 179.5 176 56.8
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 2.9e-43 179.5 167 58.1
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 4.9e-43 178.7 155 60.6
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 6.4e-43 178.3 148 60.8
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 8.4e-43 177.9 155 60.0
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 8.4e-43 177.9 155 60.0
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 8.4e-43 177.9 190 54.7
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 2.4e-42 176.4 156 61.5
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 2.4e-42 176.4 141 68.1
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 4.2e-42 175.6 141 68.8
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 4.2e-42 175.6 145 62.1
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 7.1e-42 174.9 177 57.1
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 7.1e-42 174.9 160 60.6
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 1.6e-41 173.7 156 59.0
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 1.6e-41 173.7 156 58.3
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 2.1e-41 173.3 175 54.9
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 2.1e-41 173.3 156 60.9
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 3.5e-41 172.6 156 59.0
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 4.6e-41 172.2 156 60.9
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 6.0e-41 171.8 157 58.0
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 7.9e-41 171.4 156 58.3
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 7.9e-41 171.4 140 65.7
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 1.0e-40 171.0 156 59.0
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 1.3e-40 170.6 143 60.8
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 2.3e-40 169.9 156 60.3
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 3.9e-40 169.1 158 56.3
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 5.1e-40 168.7 147 59.9
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 5.1e-40 168.7 147 59.9
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 5.1e-40 168.7 173 57.2
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 6.6e-40 168.3 154 58.4
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 6.6e-40 168.3 156 58.3
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 6.6e-40 168.3 156 60.9
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 6.6e-40 168.3 151 61.6
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 1.1e-39 167.5 144 59.0
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 1.1e-39 167.5 158 58.2
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 1.1e-39 167.5 141 66.0
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 1.5e-39 167.2 155 59.4
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 1.5e-39 167.2 146 61.0
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 1.9e-39 166.8 165 55.8
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 3.3e-39 166.0 158 59.5
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 5.6e-39 165.2 158 61.4
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 7.4e-39 164.9 158 58.2
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 9.6e-39 164.5 146 58.9
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 9.6e-39 164.5 158 60.1
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.6e-38 163.7 156 57.7
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 2.8e-38 162.9 156 57.7
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 4.8e-38 162.2 156 60.3
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 1.1e-37 161.0 144 59.7
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 1.4e-37 160.6 183 52.5
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 1.4e-37 160.6 146 61.0
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.8e-37 160.2 156 57.1
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 2.4e-37 159.8 145 62.1
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 5.3e-37 158.7 155 56.1
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 5.3e-37 158.7 158 58.9
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 6.9e-37 158.3 146 60.3
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 1.5e-36 157.1 178 53.4
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 5.8e-36 155.2 155 55.5
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 2.9e-35 152.9 154 57.1
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 8.4e-35 151.4 166 51.2
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 1.4e-34 150.6 166 50.6
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 1.9e-34 150.2 158 55.7
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 1.9e-34 150.2 166 50.6
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 2.4e-34 149.8 147 56.5
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 2.4e-34 149.8 154 55.2
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 4.2e-34 149.1 145 55.9
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 5.5e-34 148.7 156 57.1
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 7.1e-34 148.3 149 56.4
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 1.3e-32 144.1 158 51.3
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 1.3e-32 144.1 158 51.3
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 2.3e-32 143.3 146 55.5
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 2.3e-32 143.3 151 53.0
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 5.1e-32 142.1 139 54.7
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 1.1e-31 141.0 147 51.7
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 1.5e-31 140.6 111 64.9
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 1.9e-31 140.2 155 52.9
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 1.6e-30 137.1 157 53.5
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 3.7e-30 136.0 129 55.0
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 3.7e-30 136.0 158 48.7
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 4.8e-30 135.6 144 50.0
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 8.1e-30 134.8 148 52.7
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 9.0e-29 131.3 118 57.6
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 2.6e-28 129.8 147 51.7
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 4.5e-28 129.0 133 53.4
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 4.5e-28 129.0 147 51.7
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 4.5e-28 129.0 158 46.8
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 2.2e-27 126.7 119 56.3
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 8.4e-27 124.8 157 49.0
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 8.4e-27 124.8 137 50.4
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 2.5e-26 123.2 198 43.4
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 2.5e-26 123.2 101 66.3
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 4.2e-26 122.5 205 40.5
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 9.3e-26 121.3 144 49.3
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 9.3e-26 121.3 169 45.6
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 1.6e-25 120.6 111 59.5
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 7.9e-25 118.2 163 46.6
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.3e-24 117.5 139 48.9
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.3e-24 117.5 206 41.3
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 8.7e-24 114.8 133 48.9
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 1.5e-23 114.0 259 34.7
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 5.7e-23 112.1 94 68.1
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 4.1e-21 105.9 69 73.9
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 4.1e-21 105.9 140 47.9
CAN.G328.18 Capsicum annuum HOM05D004607 ORTHO05D005836 1.2e-20 104.4 113 50.4
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 4.5e-20 102.4 87 62.1
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 5.9e-20 102.1 84 66.7
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 1.0e-19 101.3 75 68.0
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 1.7e-19 100.5 111 55.9
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 2.9e-19 99.8 83 62.7
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 1.4e-18 97.4 90 65.6
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 2.5e-18 96.7 83 60.2
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 4.2e-18 95.9 85 61.2
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 1.8e-16 90.5 94 57.4
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 1.1e-15 87.8 137 38.7
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 1.8e-13 80.5 144 38.9
SGA_v2.0_scaffold24G10477 Striga asiatica HOM05D004607 ORTHO05D005836 1.8e-13 80.5 154 33.8
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 1.5e-12 77.4 75 56.0
PGSC0003DMG400017476 Solanum tuberosum HOM05D004607 ORTHO05D005836 5.9e-12 75.5 79 45.6
Cpa.g.sc117.83 Carica papaya HOM05D004607 ORTHO05D005836 1.0e-11 74.7 66 60.6
Mapoly0007s0238 Marchantia polymorpha HOM05D004607 ORTHO05D005836 5.5e-10 68.9 124 33.9
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 3.6e-09 66.2 69 60.9
Pp3c7_8860 Physcomitrium patens HOM05D004607 ORTHO05D005836 4.6e-09 65.9 147 34.7
VMungo0251G1148 Vigna mungo HOM05D004607 ORTHO05D005836 8.8e-08 61.6 50 66.0
VMungo0703G0001 Vigna mungo HOM05D004607 ORTHO05D005836 1.1e-07 61.2 58 58.6


User provided reference genes

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