Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10016201m.g Citrus clementina HOM05D007318 ORTHO05D009289 1.5e-166 589.3 280 100.0
Atru.chr12.1022 Acer truncatum HOM05D007318 ORTHO05D009289 5.1e-130 468.0 273 79.9
CiPaw.14G032900 Carya illinoinensis HOM05D007318 ORTHO05D009289 2.0e-126 456.1 271 75.3
Haze_02511 Corylus avellana HOM05D007318 ORTHO05D009289 6.6e-122 441.0 273 74.4
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 1.9e-121 439.5 273 74.0
TWI63G0749 Tripterygium wilfordii HOM05D007318 ORTHO05D009289 2.1e-120 436.0 273 72.5
Dinv09616 Davidia involucrata HOM05D007318 ORTHO05D009289 4.0e-119 431.8 279 70.6
Sabra10G0186800 Salix brachista HOM05D007318 ORTHO05D009289 6.9e-119 431.0 273 68.5
MD02G1257000 Malus domestica HOM05D007318 ORTHO05D009289 2.2e-117 426.0 278 71.6
Duzib151G0977 Durio zibethinus HOM05D007318 ORTHO05D009289 2.9e-117 425.6 278 70.5
Actinidia18618 Actinidia chinensis HOM05D007318 ORTHO05D009289 6.4e-117 424.5 274 69.7
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 1.9e-116 422.9 278 68.7
Manes.03G085100 Manihot esculenta HOM05D007318 ORTHO05D009289 2.4e-116 422.5 273 70.0
Gorai.005G019900 Gossypium raimondii HOM05D007318 ORTHO05D009289 5.4e-116 421.4 278 68.7
Gohir.D02G016400 Gossypium hirsutum HOM05D007318 ORTHO05D009289 1.2e-115 420.2 278 68.3
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 1.8e-114 416.4 273 71.4
Rhsim03G0098000 Rhododendron simsii HOM05D007318 ORTHO05D009289 5.1e-114 414.8 279 67.0
CSS0001089 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 4.3e-113 411.8 279 65.9
CSS0042589 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 1.3e-112 410.2 279 65.9
RcHm_v2.0_Chr1g0332361 Rosa chinensis HOM05D007318 ORTHO05D009289 4.8e-112 408.3 269 69.1
Lj6g0015884 Lotus japonicus HOM05D007318 ORTHO05D009289 8.1e-112 407.5 277 68.2
COL.COLO4_33011 Corchorus olitorius HOM05D007318 ORTHO05D009289 1.4e-111 406.8 278 67.6
CANSAT56G0802 Cannabis sativa HOM05D007318 ORTHO05D009289 1.2e-110 403.7 296 64.2
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 4.9e-109 398.3 276 67.8
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 3.2e-108 395.6 278 67.6
ECA238G4459 Erigeron canadensis HOM05D007318 ORTHO05D009289 1.2e-107 393.7 273 64.8
Nitab4.5_0001437g0020 Nicotiana tabacum HOM05D007318 ORTHO05D009289 2.1e-107 392.9 271 65.7
FAN06G3353 Fragaria x ananassa HOM05D007318 ORTHO05D009289 2.7e-107 392.5 272 66.5
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 6.0e-107 391.3 277 66.1
FAN01G1304 Fragaria x ananassa HOM05D007318 ORTHO05D009289 7.9e-107 391.0 272 66.2
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 1.0e-106 390.6 277 66.1
MBI13_g32993_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 1.8e-106 389.8 281 64.4
FvH4_7g05530 Fragaria vesca HOM05D007318 ORTHO05D009289 3.0e-106 389.0 272 66.2
CsaV3_5G035390 Cucumis sativus L. HOM05D007318 ORTHO05D009289 6.7e-106 387.9 276 65.2
Nitab4.5_0011538g0040 Nicotiana tabacum HOM05D007318 ORTHO05D009289 8.7e-106 387.5 271 63.8
Nn7g37225 Nelumbo nucifera HOM05D007318 ORTHO05D009289 1.9e-105 386.3 273 62.6
Hund22276 Selenicereus undatus HOM05D007318 ORTHO05D009289 3.3e-105 385.6 272 64.7
Oeu026589.2 Olea europaea HOM05D007318 ORTHO05D009289 4.3e-105 385.2 273 64.5
DCAR_018980 Daucus carota HOM05D007318 ORTHO05D009289 9.6e-105 384.0 277 63.9
CAN.G645.12 Capsicum annuum HOM05D007318 ORTHO05D009289 2.1e-104 382.9 270 63.7
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 8.2e-104 380.9 273 62.6
HanXRQChr07g0194021 Helianthus annuus HOM05D007318 ORTHO05D009289 2.4e-103 379.4 274 63.1
Potri.010G238500 Populus trichocarpa HOM05D007318 ORTHO05D009289 4.0e-103 378.6 224 72.8
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 2.0e-102 376.3 278 64.4
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 2.6e-102 375.9 278 64.4
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 2.6e-102 375.9 278 64.4
Sopen11g002850 Solanum pennellii HOM05D007318 ORTHO05D009289 3.4e-102 375.6 277 62.1
Peaxi162Scf00173g00322 Petunia axillaris HOM05D007318 ORTHO05D009289 1.0e-101 374.0 262 64.9
Prupe.2G075500 Prunus persica HOM05D007318 ORTHO05D009289 2.5e-100 369.4 231 73.2
Migut.F01608 Erythranthe guttata HOM05D007318 ORTHO05D009289 7.1e-100 367.9 271 63.1
SalBow6G3105 Salvia bowleyana HOM05D007318 ORTHO05D009289 7.1e-100 367.9 271 63.1
Cc02_g09660 Coffea canephora HOM05D007318 ORTHO05D009289 2.1e-99 366.3 273 59.3
MELO3C012351.2 Cucumis melo HOM05D007318 ORTHO05D009289 1.1e-97 360.5 289 60.9
TPR.G10614 Trifolium pratense HOM05D007318 ORTHO05D009289 1.9e-97 359.8 287 61.3
Lsat_1_v5_gn_2_104460 Lactuca sativa HOM05D007318 ORTHO05D009289 8.2e-96 354.4 279 60.6
MBI13_g44214_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 8.2e-96 354.4 278 60.4
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 2.4e-95 352.8 296 58.8
Medtr1g050425 Medicago truncatula HOM05D007318 ORTHO05D009289 3.1e-95 352.4 308 56.2
Lj2A32G32 Lonicera japonica HOM05D007318 ORTHO05D009289 9.0e-95 350.9 273 61.2
SGA_v2.0_scaffold13G06456 Striga asiatica HOM05D007318 ORTHO05D009289 2.0e-94 349.7 271 60.9
PSO384G0062 Papaver somniferum HOM05D007318 ORTHO05D009289 2.6e-94 349.4 278 59.7
PGR044G0176 Punica granatum HOM05D007318 ORTHO05D009289 1.0e-93 347.4 224 71.4
Psat2g020440 Pisum sativum HOM05D007318 ORTHO05D009289 2.7e-91 339.3 326 53.1
ClCG05G018410 Citrullus lanatus HOM05D007318 ORTHO05D009289 7.9e-91 337.8 276 60.1
EL10Ac4g08684 Beta vulgaris HOM05D007318 ORTHO05D009289 1.0e-90 337.4 271 57.9
Cpa.g.sc5.264 Carica papaya HOM05D007318 ORTHO05D009289 1.0e-90 337.4 236 65.7
unitig_0.g1560 Utricularia gibba HOM05D007318 ORTHO05D009289 1.1e-87 327.4 278 55.4
Aqoxy1G02117 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 1.4e-87 327.0 271 56.8
Solyc11g006930.3 Solanum lycopersicum HOM05D007318 ORTHO05D009289 2.4e-87 326.2 225 65.8
Zm00001eb196200 Zea mays HOM05D007318 ORTHO05D009289 5.9e-86 321.6 269 56.9
Os11g0136500 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 3.8e-85 318.9 267 54.7
Aqoxy1G02095 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 3.6e-83 312.4 283 53.4
Os12g0133400 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 2.0e-81 306.6 267 52.8
Cfa011269 Carpinus fangiana HOM05D007318 ORTHO05D009289 4.8e-80 302.0 195 72.3
ATR1096G030 Amborella trichopoda HOM05D007318 ORTHO05D009289 3.5e-78 295.8 231 58.0
TAR636G1683 Trochodendron aralioides HOM05D007318 ORTHO05D009289 1.0e-74 284.3 176 75.6
HPP92_018209 Vanilla planifolia HOM05D007318 ORTHO05D009289 2.4e-71 273.1 271 47.2
ClCG05G021760 Citrullus lanatus HOM05D007318 ORTHO05D009289 4.1e-71 272.3 186 68.3
AUR62043602 Chenopodium quinoa HOM05D007318 ORTHO05D009289 1.0e-69 267.7 328 43.3
Thecc.03G070600 Theobroma cacao HOM05D007318 ORTHO05D009289 1.6e-67 260.4 164 73.8
AagrBONN_evm.TU.Sc2ySwM_368.1913 Anthoceros agrestis HOM05D007318 ORTHO05D009289 1.2e-65 254.2 276 44.6
Glyma.02G164100 Glycine max HOM05D007318 ORTHO05D009289 2.0e-65 253.4 178 66.9
Mapoly0020s0170 Marchantia polymorpha HOM05D007318 ORTHO05D009289 4.1e-63 245.7 277 44.4
MSTRG.421 Avicennia marina HOM05D007318 ORTHO05D009289 2.2e-61 240.0 170 65.9
AUR62042079 Chenopodium quinoa HOM05D007318 ORTHO05D009289 1.1e-60 237.7 186 59.1
Psat6g095000 Pisum sativum HOM05D007318 ORTHO05D009289 1.0e-58 231.1 287 43.9
SMO172G0015 Selaginella moellendorffii HOM05D007318 ORTHO05D009289 6.1e-51 205.3 247 42.9
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 1.4e-50 204.1 141 61.7
Pp3c5_16220 Physcomitrium patens HOM05D007318 ORTHO05D009289 3.0e-50 203.0 230 45.7
PRCOL_00002097 Prasinoderma coloniale HOM05D007318 ORTHO05D009289 7.5e-49 198.4 279 36.6
ClCG00G005260 Citrullus lanatus HOM05D007318 ORTHO05D009289 9.8e-49 198.0 134 67.2
MBI13_g43865_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 1.4e-42 177.6 117 69.2
Lsat_1_v5_gn_5_177140 Lactuca sativa HOM05D007318 ORTHO05D009289 2.6e-41 173.3 148 58.1
SEGI_17929 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 1.9e-39 167.2 130 63.8
MCO07G233 Micromonas commoda HOM05D007318 ORTHO05D009289 5.4e-39 165.6 309 33.3
Dinv09612 Davidia involucrata HOM05D007318 ORTHO05D009289 3.0e-29 133.3 82 76.8
PGSC0003DMG400023973 Solanum tuberosum HOM05D007318 ORTHO05D009289 5.1e-29 132.5 83 71.1
SEGI_12071 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 3.5e-22 109.8 117 41.9
Cre07.g323750 Chlamydomonas reinhardtii HOM05D007318 ORTHO05D009289 4.7e-19 99.4 247 28.7
Glyma.20G074100 Glycine max HOM05D007318 ORTHO05D009289 1.8e-18 97.4 84 57.1
Lj6g0000477 Lotus japonicus HOM05D007318 ORTHO05D009289 1.0e-13 81.6 79 54.4
MBI13_g44208_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 4.0e-10 69.7 38 73.7
TAR636G1493 Trochodendron aralioides HOM05D007318 ORTHO05D009289 9.0e-10 68.6 50 60.0
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 2.0e-09 67.4 183 27.3
ClCG05G021770 Citrullus lanatus HOM05D007318 ORTHO05D009289 3.4e-09 66.6 39 69.2
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 3.4e-09 66.6 183 27.9
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 3.4e-09 66.6 209 26.3
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 4.4e-09 66.2 231 23.8
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 7.6e-09 65.5 210 30.0
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 7.6e-09 65.5 210 28.6
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 1.3e-08 64.7 168 26.2
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 1.3e-08 64.7 168 31.0
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 2.2e-08 63.9 174 25.9
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 2.2e-08 63.9 231 24.2
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 3.8e-08 63.2 174 25.9
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 4.9e-08 62.8 182 27.5
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 6.4e-08 62.4 223 25.6
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 6.4e-08 62.4 236 26.3
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 1.1e-07 61.6 159 27.7
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 1.4e-07 61.2 222 25.2
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 1.9e-07 60.8 168 26.8
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 1.9e-07 60.8 159 27.7
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 1.9e-07 60.8 195 27.7
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 2.4e-07 60.5 161 29.2
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 3.2e-07 60.1 111 32.4
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 4.2e-07 59.7 213 26.3
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 5.4e-07 59.3 201 26.4
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 7.1e-07 58.9 176 28.4
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 7.1e-07 58.9 240 24.2
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 9.3e-07 58.5 221 24.0
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 1.2e-06 58.2 135 33.3
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 1.2e-06 58.2 184 28.8
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 1.6e-06 57.8 182 27.5
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 1.6e-06 57.8 221 22.6
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 2.1e-06 57.4 169 23.1
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 2.1e-06 57.4 167 24.0
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 2.1e-06 57.4 231 22.9
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 3.5e-06 56.6 155 27.1
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 4.6e-06 56.2 212 22.6
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 6.0e-06 55.8 157 26.1
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 6.0e-06 55.8 207 26.1
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 6.0e-06 55.8 139 30.9
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 6.0e-06 55.8 207 29.5
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 7.9e-06 55.5 157 26.1
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 7.9e-06 55.5 153 31.4


User provided reference genes

Program Settings