Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10015896m.g Citrus clementina HOM05D005665 ORTHO05D007230 1.4e-198 696.0 330 100.0
Potri.011G050800 Populus trichocarpa HOM05D005665 ORTHO05D007230 2.2e-172 609.0 332 86.7
Manes.16G026000 Manihot esculenta HOM05D005665 ORTHO05D007230 9.1e-171 603.6 331 86.1
TWI38G1053 Tripterygium wilfordii HOM05D005665 ORTHO05D007230 1.6e-170 602.8 330 86.7
Sabra11G0034800 Salix brachista HOM05D005665 ORTHO05D007230 4.5e-170 601.3 332 85.5
Cpa.g.sc27.60 Carica papaya HOM05D005665 ORTHO05D007230 2.2e-169 599.0 324 85.2
Prupe.4G044600 Prunus persica HOM05D005665 ORTHO05D007230 6.5e-169 597.4 321 86.6
MD10G1295900 Malus domestica HOM05D005665 ORTHO05D007230 9.4e-168 593.6 325 85.8
Thecc.06G190100 Theobroma cacao HOM05D005665 ORTHO05D007230 1.6e-167 592.8 329 85.7
CiPaw.10G047200 Carya illinoinensis HOM05D005665 ORTHO05D007230 2.1e-167 592.4 323 86.1
Manes.17G043900 Manihot esculenta HOM05D005665 ORTHO05D007230 2.7e-167 592.0 324 86.7
Cfa000422 Carpinus fangiana HOM05D005665 ORTHO05D007230 6.1e-167 590.9 326 85.0
ClCG03G005940 Citrullus lanatus HOM05D005665 ORTHO05D007230 6.1e-167 590.9 325 84.6
CsaV3_1G012180 Cucumis sativus L. HOM05D005665 ORTHO05D007230 6.1e-167 590.9 325 84.6
Dinv07542 Davidia involucrata HOM05D005665 ORTHO05D007230 8.0e-167 590.5 327 85.0
Duzib192G0757 Durio zibethinus HOM05D005665 ORTHO05D007230 1.0e-166 590.1 329 86.0
CiPaw.09G058000 Carya illinoinensis HOM05D005665 ORTHO05D007230 1.4e-166 589.7 323 84.5
Duzib160G0567 Durio zibethinus HOM05D005665 ORTHO05D007230 1.4e-166 589.7 330 85.2
TPR.G36824 Trifolium pratense HOM05D005665 ORTHO05D007230 3.0e-166 588.6 322 84.2
Lj6g0021271 Lotus japonicus HOM05D005665 ORTHO05D007230 4.0e-166 588.2 321 85.7
Eucgr.E03124 Eucalyptus grandis HOM05D005665 ORTHO05D007230 6.8e-166 587.4 325 83.4
QL05p039803 Quercus lobata HOM05D005665 ORTHO05D007230 1.2e-165 586.6 322 85.7
Actinidia05618 Actinidia chinensis HOM05D005665 ORTHO05D007230 1.5e-165 586.3 319 85.6
MELO3C002591.2 Cucumis melo HOM05D005665 ORTHO05D007230 2.0e-165 585.9 325 83.7
Sc05g0007780 Simmondsia chinensis HOM05D005665 ORTHO05D007230 4.4e-165 584.7 325 83.4
RcHm_v2.0_Chr5g0008091 Rosa chinensis HOM05D005665 ORTHO05D007230 5.7e-165 584.3 320 85.0
FvH4_3g04930 Fragaria vesca HOM05D005665 ORTHO05D007230 7.5e-165 583.9 325 83.7
FAN11G2254 Fragaria x ananassa HOM05D005665 ORTHO05D007230 7.5e-165 583.9 325 83.7
FAN25G3768 Fragaria x ananassa HOM05D005665 ORTHO05D007230 9.8e-165 583.6 326 83.7
Hma1.2p1_0126F.1_g059290 Hydrangea macrophylla HOM05D005665 ORTHO05D007230 9.8e-165 583.6 319 84.6
Lalb_Chr18g0059701 Lupinus albus HOM05D005665 ORTHO05D007230 9.8e-165 583.6 324 84.9
Atru.chr10.1913 Acer truncatum HOM05D005665 ORTHO05D007230 2.2e-164 582.4 324 83.0
Carub.0006s3285 Capsella rubella HOM05D005665 ORTHO05D007230 3.7e-164 581.6 324 81.8
FAN21G3875 Fragaria x ananassa HOM05D005665 ORTHO05D007230 3.7e-164 581.6 326 83.4
PGR042G0011 Punica granatum HOM05D005665 ORTHO05D007230 4.8e-164 581.3 333 81.4
Gohir.D06G131200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 1.1e-163 580.1 328 82.9
Gorai.010G153100 Gossypium raimondii HOM05D005665 ORTHO05D007230 1.1e-163 580.1 324 83.3
AUR62016991 Chenopodium quinoa HOM05D005665 ORTHO05D007230 1.4e-163 579.7 330 82.7
Sed0027057 Sechium edule HOM05D005665 ORTHO05D007230 1.4e-163 579.7 324 83.3
CSS0000582 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 1.8e-163 579.3 316 83.9
Ca_00306_v3 Cicer arietinum L. HOM05D005665 ORTHO05D007230 1.8e-163 579.3 313 85.3
THA.LOC104806290 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 1.8e-163 579.3 329 82.4
FAN16G3723 Fragaria x ananassa HOM05D005665 ORTHO05D007230 3.1e-163 578.6 326 83.1
Gohir.A06G126400 Gossypium hirsutum HOM05D005665 ORTHO05D007230 3.1e-163 578.6 327 82.6
Gohir.A10G024500 Gossypium hirsutum HOM05D005665 ORTHO05D007230 3.1e-163 578.6 330 83.3
Gorai.011G026500 Gossypium raimondii HOM05D005665 ORTHO05D007230 3.1e-163 578.6 330 83.3
Sed0024618 Sechium edule HOM05D005665 ORTHO05D007230 3.1e-163 578.6 326 83.7
Actinidia01890 Actinidia chinensis HOM05D005665 ORTHO05D007230 5.4e-163 577.8 327 84.1
Sp6g04030 Schrenkiella parvula HOM05D005665 ORTHO05D007230 5.4e-163 577.8 319 83.4
SpUn0051_0010 Schrenkiella parvula HOM05D005665 ORTHO05D007230 5.4e-163 577.8 319 83.4
Thhalv10028789m.g Eutrema salsugineum HOM05D005665 ORTHO05D007230 9.1e-163 577.0 324 80.9
Gohir.D10G025200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 9.1e-163 577.0 325 84.0
Peaxi162Scf00461g00010 Petunia axillaris HOM05D005665 ORTHO05D007230 9.1e-163 577.0 329 83.0
THA.LOC104812890 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 9.1e-163 577.0 319 84.0
Aqoxy4G01024 Aquilegia oxysepala HOM05D005665 ORTHO05D007230 1.6e-162 576.2 319 81.2
Peaxi162Scf00530g00218 Petunia axillaris HOM05D005665 ORTHO05D007230 1.6e-162 576.2 332 82.5
AUR62014800 Chenopodium quinoa HOM05D005665 ORTHO05D007230 2.0e-162 575.9 330 82.1
Glyma.15G072800 Glycine max HOM05D005665 ORTHO05D007230 2.0e-162 575.9 319 82.8
BolC9t56129H Brassica oleracea HOM05D005665 ORTHO05D007230 3.5e-162 575.1 326 81.6
Lj2A287T49 Lonicera japonica HOM05D005665 ORTHO05D007230 3.5e-162 575.1 321 83.5
Medtr2g013070 Medicago truncatula HOM05D005665 ORTHO05D007230 3.5e-162 575.1 318 84.0
Nitab4.5_0013250g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 3.5e-162 575.1 329 83.6
Nitab4.5_0003942g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 7.7e-162 573.9 331 82.5
ClCG01G022870 Citrullus lanatus HOM05D005665 ORTHO05D007230 1.0e-161 573.5 330 82.1
Solyc10g009030.4 Solanum lycopersicum HOM05D005665 ORTHO05D007230 1.3e-161 573.2 325 84.0
Cc02_g13170 Coffea canephora HOM05D005665 ORTHO05D007230 1.7e-161 572.8 319 82.4
PGSC0003DMG400022827 Solanum tuberosum HOM05D005665 ORTHO05D007230 1.7e-161 572.8 325 83.7
Sopen10g004810 Solanum pennellii HOM05D005665 ORTHO05D007230 2.3e-161 572.4 325 84.0
TAR627G0371 Trochodendron aralioides HOM05D005665 ORTHO05D007230 3.8e-161 571.6 323 81.4
AT4G04930 Arabidopsis thaliana HOM05D005665 ORTHO05D007230 6.6e-161 570.9 317 82.3
MSTRG.7328 Avicennia marina HOM05D005665 ORTHO05D007230 1.1e-160 570.1 333 80.5
A09p25970 Brassica napus HOM05D005665 ORTHO05D007230 1.1e-160 570.1 326 81.0
BraA09t38164Z Brassica rapa HOM05D005665 ORTHO05D007230 1.1e-160 570.1 326 81.0
TAR626G1890 Trochodendron aralioides HOM05D005665 ORTHO05D007230 1.1e-160 570.1 320 82.5
CANSAT35G1141 Cannabis sativa HOM05D005665 ORTHO05D007230 1.5e-160 569.7 335 82.4
Nn1g04043 Nelumbo nucifera HOM05D005665 ORTHO05D007230 1.9e-160 569.3 310 84.5
Psat1g206640 Pisum sativum HOM05D005665 ORTHO05D007230 1.9e-160 569.3 325 82.5
EL10Ac8g20360 Beta vulgaris HOM05D005665 ORTHO05D007230 3.3e-160 568.5 330 80.9
Nitab4.5_0004775g0030 Nicotiana tabacum HOM05D005665 ORTHO05D007230 3.3e-160 568.5 332 81.3
GSVIVG01002020001 Vitis vinifera HOM05D005665 ORTHO05D007230 5.5e-160 567.8 314 83.1
Nn1g06596 Nelumbo nucifera HOM05D005665 ORTHO05D007230 7.2e-160 567.4 318 81.4
BcaC04g21346 Brassica carinata HOM05D005665 ORTHO05D007230 9.5e-160 567.0 326 80.4
C09p32940 Brassica napus HOM05D005665 ORTHO05D007230 9.5e-160 567.0 326 80.4
PSO210G3809 Papaver somniferum HOM05D005665 ORTHO05D007230 1.2e-159 566.6 323 80.2
PSO832G3519 Papaver somniferum HOM05D005665 ORTHO05D007230 1.2e-159 566.6 323 80.2
SalBow7G1156 Salvia bowleyana HOM05D005665 ORTHO05D007230 2.8e-159 565.5 324 79.3
Migut.M01155 Erythranthe guttata HOM05D005665 ORTHO05D007230 4.7e-159 564.7 331 80.7
Oeu053967.2 Olea europaea HOM05D005665 ORTHO05D007230 4.7e-159 564.7 335 80.0
COL.COLO4_31496 Corchorus olitorius HOM05D005665 ORTHO05D007230 6.1e-159 564.3 306 86.9
Nitab4.5_0005615g0050 Nicotiana tabacum HOM05D005665 ORTHO05D007230 1.4e-158 563.1 321 82.2
BcaB01g01848 Brassica carinata HOM05D005665 ORTHO05D007230 2.3e-158 562.4 327 80.4
Glyma.13G240700 Glycine max HOM05D005665 ORTHO05D007230 3.0e-158 562.0 319 81.2
ATR0680G322 Amborella trichopoda HOM05D005665 ORTHO05D007230 4.0e-158 561.6 323 78.9
Haze_06494 Corylus avellana HOM05D005665 ORTHO05D007230 4.0e-158 561.6 384 71.6
Os02g0639600 Oryza sativa ssp. japonica HOM05D005665 ORTHO05D007230 5.2e-158 561.2 331 79.8
Phvul.006G187100 Phaseolus vulgaris HOM05D005665 ORTHO05D007230 8.9e-158 560.5 314 81.8
SGA_v2.0_scaffold22G09724 Striga asiatica HOM05D005665 ORTHO05D007230 8.9e-158 560.5 324 79.6
VMungo0540G1872 Vigna mungo HOM05D005665 ORTHO05D007230 2.6e-157 558.9 314 81.8
MBI18_g16999_MAGBIO Magnolia biondii HOM05D005665 ORTHO05D007230 7.0e-155 550.8 326 80.7
SHI01876 Sapria himalayana HOM05D005665 ORTHO05D007230 1.7e-153 546.2 352 73.9
Zm00001eb075800 Zea mays HOM05D005665 ORTHO05D007230 1.1e-152 543.5 325 76.6
arahy.Tifrunner.gnm1.ann1.5IXZ6F Arachis hypogaea HOM05D005665 ORTHO05D007230 1.5e-152 543.1 323 78.6
Aa31LG9G9560 Aethionema arabicum HOM05D005665 ORTHO05D007230 1.9e-152 542.7 320 78.1
arahy.Tifrunner.gnm1.ann1.C923ZL Arachis hypogaea HOM05D005665 ORTHO05D007230 4.3e-152 541.6 323 78.3
Ah.09g237240 Amaranthus hybridus HOM05D005665 ORTHO05D007230 5.2e-150 534.6 301 81.4
SEGI_10058 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 1.1e-144 516.9 308 76.6
Eucgr.L02776 Eucalyptus grandis HOM05D005665 ORTHO05D007230 4.0e-142 508.4 279 82.8
HPP92_021012 Vanilla planifolia HOM05D005665 ORTHO05D007230 1.5e-141 506.5 329 72.0
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 1.4e-139 500.0 308 75.0
Lsat_1_v5_gn_1_126041 Lactuca sativa HOM05D005665 ORTHO05D007230 1.9e-139 499.6 315 73.0
Nitab4.5_0002158g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 9.5e-136 487.3 313 74.8
CAN.G413.22 Capsicum annuum HOM05D005665 ORTHO05D007230 1.6e-135 486.5 274 83.9
RhsimUnG0044900 Rhododendron simsii HOM05D005665 ORTHO05D007230 2.0e-133 479.6 279 79.9
Mapoly0083s0054 Marchantia polymorpha HOM05D005665 ORTHO05D007230 1.7e-132 476.5 310 70.3
MD05G1314600 Malus domestica HOM05D005665 ORTHO05D007230 5.4e-131 471.5 338 68.3
AagrBONN_evm.TU.Sc2ySwM_344.2491 Anthoceros agrestis HOM05D005665 ORTHO05D007230 1.5e-128 463.4 310 67.7
Pp3c23_19370 Physcomitrium patens HOM05D005665 ORTHO05D007230 5.6e-128 461.5 308 67.5
Pp3c23_19371 Physcomitrium patens HOM05D005665 ORTHO05D007230 5.6e-128 461.5 308 67.5
SMO364G0702 Selaginella moellendorffii HOM05D005665 ORTHO05D007230 1.6e-127 459.9 309 66.7
DCAR_004082 Daucus carota HOM05D005665 ORTHO05D007230 3.2e-123 445.7 250 80.0
AagrBONN_evm.TU.Sc2ySwM_344.2084 Anthoceros agrestis HOM05D005665 ORTHO05D007230 1.8e-118 429.9 306 63.4
CSS0037689 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 1.9e-112 409.8 230 83.5
MCO04G319 Micromonas commoda HOM05D005665 ORTHO05D007230 9.6e-104 380.9 310 57.4
CDE02G1299 Ceratophyllum demersum HOM05D005665 ORTHO05D007230 3.2e-99 365.9 246 69.5
unitig_21.g20852 Utricularia gibba HOM05D005665 ORTHO05D007230 8.7e-97 357.8 215 76.3
PRCOL_00001033 Prasinoderma coloniale HOM05D005665 ORTHO05D007230 1.7e-92 343.6 317 51.1
Cfa021982 Carpinus fangiana HOM05D005665 ORTHO05D007230 1.6e-82 310.5 344 44.8
Haze_26717 Corylus avellana HOM05D005665 ORTHO05D007230 1.2e-69 267.7 372 38.7
Thecc.05G195100 Theobroma cacao HOM05D005665 ORTHO05D007230 2.0e-53 213.8 123 78.0
Dinv40542 Davidia involucrata HOM05D005665 ORTHO05D007230 4.4e-32 142.9 82 81.7
MELO3C007292.2 Cucumis melo HOM05D005665 ORTHO05D039877 1.9e-30 137.5 89 77.5
TAR629G1936 Trochodendron aralioides HOM05D000151 ORTHO05D000074 3.5e-21 106.7 83 63.9
BcaB05g23333 Brassica carinata HOM05D005665 ORTHO05D039877 1.9e-19 100.9 66 74.2
Zm00001eb175420 Zea mays HOM05D005665 ORTHO05D007230 1.9e-14 84.3 47 78.7
DCAR_004083 Daucus carota HOM05D000799 ORTHO05D000629 2.1e-13 80.9 51 70.6
Zm00001eb423550 Zea mays HOM05D005665 ORTHO05D007230 6.0e-13 79.3 41 82.9
Thecc.05G194800 Theobroma cacao HOM05D005665 ORTHO05D007230 1.0e-12 78.6 52 73.1
SEGI_41581 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 4.7e-10 69.7 51 60.8


User provided reference genes

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