Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10015844m.g Citrus clementina HOM05D010448 ORTHO05D012537 1.9e-203 712.2 340 100.0
Atru.chr6.2743 Acer truncatum HOM05D010448 ORTHO05D012537 8.0e-130 467.6 345 66.7
Eucgr.G01906 Eucalyptus grandis HOM05D010448 ORTHO05D012537 1.5e-83 313.9 357 44.5
Potri.001G181000 Populus trichocarpa HOM05D010448 ORTHO05D012537 5.1e-76 288.9 335 45.1
Potri.001G146000 Populus trichocarpa HOM05D010448 ORTHO05D012537 6.7e-76 288.5 335 43.9
Manes.18G108700 Manihot esculenta HOM05D010448 ORTHO05D012537 1.5e-72 277.3 338 44.4
Sabra01G0146000 Salix brachista HOM05D010448 ORTHO05D012537 3.3e-67 259.6 335 41.5
Sabra01G0114700 Salix brachista HOM05D010448 ORTHO05D012537 1.4e-65 254.2 331 41.7
Lj6g0025570 Lotus japonicus HOM05D010448 ORTHO05D012537 1.4e-57 227.6 300 41.7
Glyma.11G210008 Glycine max HOM05D010448 ORTHO05D012537 2.0e-56 223.8 343 36.4
Glyma.18G044800 Glycine max HOM05D010448 ORTHO05D012537 1.3e-55 221.1 343 36.7
Lalb_Chr18g0053761 Lupinus albus HOM05D010448 ORTHO05D012537 2.2e-55 220.3 303 39.6
VMungo0540G1047 Vigna mungo HOM05D010448 ORTHO05D012537 5.0e-55 219.2 316 38.9
Phvul.006G086200 Phaseolus vulgaris HOM05D010448 ORTHO05D012537 9.4e-54 214.9 317 37.9
Medtr3g064460 Medicago truncatula HOM05D010448 ORTHO05D012537 1.3e-50 204.5 316 37.0
TPR.G18483 Trifolium pratense HOM05D010448 ORTHO05D012537 1.4e-49 201.1 306 38.2
arahy.Tifrunner.gnm1.ann1.4R5R47 Arachis hypogaea HOM05D010448 ORTHO05D012537 3.5e-48 196.4 307 38.1
Psat5g142640 Pisum sativum HOM05D010448 ORTHO05D012537 4.5e-48 196.1 299 36.1
Atru.chr13.2066 Acer truncatum HOM05D010448 ORTHO05D012537 2.7e-24 117.1 126 43.7
MBI07_g31506_MAGBIO Magnolia biondii HOM05D010448 ORTHO05D012537 1.5e-14 84.7 213 30.5
Ciclev10005097m.g Citrus clementina HOM05D000664 ORTHO05D000491 8.1e-13 79.0 311 27.3
COL.COLO4_26298 Corchorus olitorius HOM05D015450 ORTHO05D017757 1.4e-12 78.2 260 25.0
RcHm_v2.0_Chr4g0398061 Rosa chinensis HOM05D000664 ORTHO05D000491 5.2e-12 76.3 300 28.7
Nitab4.5_0000032g0090 Nicotiana tabacum HOM05D000664 ORTHO05D000491 8.9e-12 75.5 301 25.9
MBI11_g33761_MAGBIO Magnolia biondii HOM05D010448 ORTHO05D012537 1.5e-11 74.7 141 31.9
Lj8C33T15 Lonicera japonica HOM05D000664 ORTHO05D000491 1.7e-10 71.2 302 25.8
Nitab4.5_0004790g0040 Nicotiana tabacum HOM05D000664 ORTHO05D000491 1.7e-10 71.2 275 24.4
FAN22G1400 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.2e-10 70.9 316 26.3
Nn4g25094 Nelumbo nucifera HOM05D002420 ORTHO05D002422 2.2e-10 70.9 200 26.0
MD13G1235200 Malus domestica HOM05D000664 ORTHO05D000491 3.7e-10 70.1 321 24.0
FAN17G0956 Fragaria x ananassa HOM05D000664 ORTHO05D000491 8.3e-10 68.9 316 26.3
Prupe.1G066300 Prunus persica HOM05D000664 ORTHO05D000491 1.1e-09 68.6 295 24.4
AL6G17920 Arabidopsis lyrata HOM05D000664 ORTHO05D000491 1.4e-09 68.2 301 25.2
TAR626G1239 Trochodendron aralioides HOM05D000664 ORTHO05D000491 2.4e-09 67.4 307 26.1
Ciclev10006867m.g Citrus clementina HOM05D000664 ORTHO05D000491 4.1e-09 66.6 293 27.0
Haze_19047 Corylus avellana HOM05D000664 ORTHO05D000491 5.4e-09 66.2 295 28.1
Nn8g41006 Nelumbo nucifera HOM05D000664 ORTHO05D000491 7.1e-09 65.9 184 31.5
MBI01_g31985_MAGBIO Magnolia biondii HOM05D000664 ORTHO05D000491 9.2e-09 65.5 313 25.2
MD16G1240100 Malus domestica HOM05D000664 ORTHO05D000491 9.2e-09 65.5 330 24.5
COL.COLO4_34020 Corchorus olitorius HOM05D001729 ORTHO05D001155 1.2e-08 65.1 297 26.3
SGA_v2.0_scaffold136G35012 Striga asiatica HOM05D000664 ORTHO05D000491 2.1e-08 64.3 286 26.2
Rhsim03G0162000 Rhododendron simsii HOM05D000664 ORTHO05D000491 2.7e-08 63.9 297 26.6
DCAR_018084 Daucus carota HOM05D000664 ORTHO05D000491 3.5e-08 63.5 303 24.8
AT5G07610 Arabidopsis thaliana HOM05D000664 ORTHO05D000491 7.8e-08 62.4 315 23.2
Lsat_1_v5_gn_9_51601 Lactuca sativa HOM05D000664 ORTHO05D000491 1.0e-07 62.0 305 25.6
Cfa020730 Carpinus fangiana HOM05D000664 ORTHO05D000491 1.7e-07 61.2 295 27.1
FAN07G1045 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.3e-07 60.8 316 25.6
Gohir.A09G096401 Gossypium hirsutum HOM05D001729 ORTHO05D001155 2.3e-07 60.8 312 25.6
HanXRQChr16g0525181 Helianthus annuus HOM05D000664 ORTHO05D000491 2.3e-07 60.8 314 25.5
Peaxi162Scf00725g00022 Petunia axillaris HOM05D000664 ORTHO05D000491 2.3e-07 60.8 300 26.7
TWI77G0815 Tripterygium wilfordii HOM05D008040 ORTHO05D010075 2.3e-07 60.8 268 23.1
TAR371G0827 Trochodendron aralioides HOM05D002420 ORTHO05D002422 2.3e-07 60.8 202 23.3
Aqoxy4G01072 Aquilegia oxysepala HOM05D002420 ORTHO05D002422 3.0e-07 60.5 275 21.5
CDE04G2855 Ceratophyllum demersum HOM05D000664 ORTHO05D000491 3.0e-07 60.5 285 26.0
DCAR_018085 Daucus carota HOM05D000664 ORTHO05D000491 3.0e-07 60.5 135 32.6
Duzib170G0599 Durio zibethinus HOM05D001729 ORTHO05D001155 3.0e-07 60.5 290 25.5
Gohir.D12G199200 Gossypium hirsutum HOM05D000664 ORTHO05D000491 3.0e-07 60.5 297 26.9
Lsat_1_v5_gn_9_51501 Lactuca sativa HOM05D000664 ORTHO05D000491 3.0e-07 60.5 302 25.2
CSS0020895 Camellia sinensis var. sinensis HOM05D008898 ORTHO05D001155 3.9e-07 60.1 287 25.1
CSS0028413 Camellia sinensis var. sinensis HOM05D008898 ORTHO05D001155 3.9e-07 60.1 287 25.1
DCAR_018081 Daucus carota HOM05D000664 ORTHO05D000491 3.9e-07 60.1 138 32.6
Peaxi162Scf00171g00214 Petunia axillaris HOM05D002420 ORTHO05D002422 3.9e-07 60.1 216 23.6
GSVIVG01010911001 Vitis vinifera HOM05D000664 ORTHO05D000491 3.9e-07 60.1 288 25.7
Actinidia31674 Actinidia chinensis HOM05D000664 ORTHO05D000491 5.1e-07 59.7 294 26.9
CDE06G0907 Ceratophyllum demersum HOM05D000855 ORTHO05D000491 5.1e-07 59.7 294 24.1
Gorai.006G112800 Gossypium raimondii HOM05D001729 ORTHO05D001155 5.1e-07 59.7 310 25.2
HanXRQChr03g0076111 Helianthus annuus HOM05D000664 ORTHO05D000491 5.1e-07 59.7 162 32.1
FAN07G0903 Fragaria x ananassa HOM05D000664 ORTHO05D000491 8.6e-07 58.9 302 28.1
Gorai.008G214400 Gossypium raimondii HOM05D000664 ORTHO05D000491 8.6e-07 58.9 297 26.3
PSO063G5348 Papaver somniferum HOM05D002420 ORTHO05D002422 8.6e-07 58.9 203 24.1
FAN12G4320 Fragaria x ananassa HOM05D000664 ORTHO05D000491 1.1e-06 58.5 187 29.4
TAR625G1137 Trochodendron aralioides HOM05D001729 ORTHO05D001155 1.1e-06 58.5 311 25.1
FvH4_4g06300 Fragaria vesca HOM05D000664 ORTHO05D000491 1.9e-06 57.8 187 29.4
QL03p029097 Quercus lobata HOM05D007779 ORTHO05D009863 1.9e-06 57.8 228 25.4
Oeu060862.1 Olea europaea HOM05D000664 ORTHO05D000491 2.5e-06 57.4 274 24.8
PSO782G2286 Papaver somniferum HOM05D002420 ORTHO05D002422 2.5e-06 57.4 199 24.6
Ciclev10005096m.g Citrus clementina HOM05D000664 ORTHO05D000491 4.3e-06 56.6 185 28.6
Gohir.D09G096101 Gossypium hirsutum HOM05D001729 ORTHO05D001155 4.3e-06 56.6 310 24.8
RcHm_v2.0_Chr4g0398041 Rosa chinensis HOM05D000664 ORTHO05D000491 4.3e-06 56.6 170 30.6
Lj4g0009025 Lotus japonicus HOM05D002420 ORTHO05D002422 5.6e-06 56.2 203 22.7
HanXRQChr12g0365521 Helianthus annuus HOM05D000664 ORTHO05D000491 7.3e-06 55.8 136 30.9
Potri.018G132800 Populus trichocarpa HOM05D000664 ORTHO05D000491 7.3e-06 55.8 333 23.1


User provided reference genes

Program Settings