Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 3.1e-201 704.9 356 100.0
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 3.4e-163 578.6 358 81.8
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 5.1e-159 564.7 357 78.2
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 3.1e-156 555.4 356 77.8
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 4.0e-156 555.1 357 78.4
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 1.2e-155 553.5 357 78.4
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 1.5e-155 553.1 356 77.5
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 2.6e-155 552.4 356 77.0
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 4.4e-155 551.6 357 76.5
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 7.6e-155 550.8 356 78.1
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 2.9e-154 548.9 355 76.3
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 1.1e-153 547.0 357 76.5
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 2.1e-152 542.7 356 75.6
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 4.6e-152 541.6 357 76.8
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 4.6e-152 541.6 358 76.0
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 7.8e-152 540.8 354 76.3
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 3.0e-151 538.9 356 76.4
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 3.9e-151 538.5 356 76.4
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 1.9e-150 536.2 356 74.2
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 1.9e-150 536.2 355 75.2
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 2.5e-150 535.8 354 75.7
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 5.6e-150 534.6 355 74.1
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 9.6e-150 533.9 357 75.4
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 1.6e-149 533.1 356 75.0
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 2.8e-149 532.3 355 74.4
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 2.8e-149 532.3 356 74.7
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 6.2e-149 531.2 355 74.6
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 6.2e-149 531.2 356 75.0
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 6.2e-149 531.2 354 76.6
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 1.1e-148 530.4 355 74.6
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 1.4e-148 530.0 354 74.6
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 1.4e-148 530.0 356 74.4
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 1.4e-148 530.0 354 74.6
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 1.4e-148 530.0 357 76.5
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 2.4e-148 529.3 360 76.1
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 2.0e-147 526.2 355 74.1
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 4.4e-147 525.0 357 72.8
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 5.8e-147 524.6 356 75.0
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 5.8e-147 524.6 356 75.0
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 7.6e-147 524.2 356 76.1
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 9.9e-147 523.9 354 73.2
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 2.2e-146 522.7 354 74.9
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 2.9e-146 522.3 356 73.0
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 2.9e-146 522.3 356 75.3
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 2.9e-146 522.3 359 74.7
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 2.9e-146 522.3 356 73.0
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 6.4e-146 521.2 356 71.9
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 1.9e-145 519.6 354 74.0
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 1.9e-145 519.6 354 74.0
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 1.9e-145 519.6 385 70.1
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 1.9e-145 519.6 356 71.9
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 2.4e-145 519.2 356 75.0
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 2.4e-145 519.2 355 74.4
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 3.2e-145 518.8 354 74.0
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 5.4e-145 518.1 357 73.1
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 5.4e-145 518.1 356 75.0
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 7.1e-145 517.7 354 73.7
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 2.1e-144 516.2 354 73.4
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 2.7e-144 515.8 356 72.2
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 3.9e-143 511.9 355 72.4
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 5.6e-142 508.1 356 73.3
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 1.3e-141 506.9 358 74.0
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 3.6e-141 505.4 356 71.3
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 7.6e-139 497.7 356 70.2
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 9.9e-139 497.3 356 71.9
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 3.8e-138 495.4 353 69.7
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 8.4e-138 494.2 353 69.4
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 1.9e-137 493.0 353 70.0
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 7.9e-136 487.6 356 69.7
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 3.0e-135 485.7 360 71.7
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 5.1e-135 485.0 310 76.8
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 8.1e-133 477.6 358 66.8
Gohir.A06G108500 Gossypium hirsutum HOM05D006024 ORTHO05D007505 1.4e-132 476.9 354 69.5
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 1.8e-132 476.5 385 64.9
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 2.4e-132 476.1 352 69.0
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 3.1e-132 475.7 354 66.7
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 3.5e-128 462.2 358 65.1
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 3.0e-127 459.1 359 64.3
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 3.9e-127 458.8 353 66.3
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 3.1e-124 449.1 356 64.6
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 5.3e-124 448.4 371 64.4
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 5.3e-124 448.4 473 54.3
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 1.2e-123 447.2 375 63.7
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 1.5e-123 446.8 356 64.9
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 2.6e-123 446.0 352 66.5
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 2.1e-120 436.4 356 62.9
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 7.9e-120 434.5 356 62.1
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 3.4e-115 419.1 353 60.1
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 5.5e-113 411.8 356 61.5
Sc06g0004470 Simmondsia chinensis HOM05D006024 ORTHO05D007505 6.9e-108 394.8 257 74.7
Rhsim13G0225400 Rhododendron simsii HOM05D006024 ORTHO05D007505 1.7e-106 390.2 258 74.8
TAR636G0774 Trochodendron aralioides HOM05D006024 ORTHO05D007505 4.2e-105 385.6 252 74.6
ECA233G0904 Erigeron canadensis HOM05D006024 ORTHO05D007505 1.8e-100 370.2 251 73.3
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 1.8e-100 370.2 357 55.7
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.9e-97 360.1 350 51.4
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 7.5e-94 348.2 355 49.0
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 3.8e-90 335.9 375 47.2
Haze_23046 Corylus avellana HOM05D006024 ORTHO05D007505 5.5e-89 332.0 295 60.3
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 9.8e-86 321.2 354 52.8
AagrBONN_evm.TU.Sc2ySwM_344.3372 Anthoceros agrestis HOM05D006024 ORTHO05D007505 1.1e-84 317.8 353 46.2
SMO146G0097 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 3.5e-83 312.8 343 47.2
ClCG02G023630 Citrullus lanatus HOM05D006024 ORTHO05D007505 5.9e-83 312.0 199 77.9
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 2.2e-82 310.1 360 47.5
SMO144G0113 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 1.2e-78 297.7 353 45.3
Zm00001eb094580 Zea mays HOM05D006024 ORTHO05D007505 1.3e-74 284.3 201 69.7
AagrBONN_evm.TU.Sc2ySwM_344.254 Anthoceros agrestis HOM05D006024 ORTHO05D007505 6.8e-71 271.9 350 41.4
Pp3c3_20310 Physcomitrium patens HOM05D006024 ORTHO05D007505 8.9e-71 271.6 358 42.2
Mapoly0033s0066 Marchantia polymorpha HOM05D006024 ORTHO05D007505 4.4e-70 269.2 354 42.7
FAN16G2307 Fragaria x ananassa HOM05D006024 ORTHO05D007505 3.0e-50 203.4 146 72.6
HPP92_000457 Vanilla planifolia HOM05D006024 ORTHO05D007505 1.5e-46 191.0 148 67.6
Psat7g086040 Pisum sativum HOM05D006024 ORTHO05D007505 2.5e-41 173.7 209 49.8
TAR636G1381 Trochodendron aralioides HOM05D006024 ORTHO05D007505 9.9e-38 161.8 183 51.9
Cre01.g023300 Chlamydomonas reinhardtii HOM05D006024 ORTHO05D007505 2.2e-37 160.6 408 29.2
Psat6g204000 Pisum sativum HOM05D006024 ORTHO05D007505 1.6e-35 154.5 151 58.9
Sc06g0004480 Simmondsia chinensis HOM05D006024 ORTHO05D007505 3.3e-33 146.7 99 75.8
FAN25G0441 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.4e-31 141.4 128 59.4
Cfa023900 Carpinus fangiana HOM05D006024 ORTHO05D007505 4.0e-31 139.8 355 30.1
Glyma.15G031500 Glycine max HOM05D006024 ORTHO05D007505 4.9e-29 132.9 133 56.4
ECA233G1997 Erigeron canadensis HOM05D006024 ORTHO05D007505 5.4e-28 129.4 98 66.3
Medtr8g016390 Medicago truncatula HOM05D006024 ORTHO05D007505 1.8e-26 124.4 96 67.7
Actinidia16298 Actinidia chinensis HOM05D006024 ORTHO05D007505 3.0e-26 123.6 92 67.4
Psat5g288680 Pisum sativum HOM05D006024 ORTHO05D007505 5.1e-26 122.9 93 67.7
Rhsim13G0225300 Rhododendron simsii HOM05D006024 ORTHO05D007505 1.6e-24 117.9 84 66.7
C01p43430 Brassica napus HOM05D006024 ORTHO05D007505 3.4e-22 110.2 98 60.2
BolC1t04302H Brassica oleracea HOM05D006024 ORTHO05D007505 3.4e-22 110.2 98 60.2
Psat5g288640 Pisum sativum HOM05D006024 ORTHO05D007505 3.8e-21 106.7 137 51.1
CSS0042824 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 6.7e-18 95.9 84 61.9
CSS0049558 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.1e-17 95.1 83 62.7
CSS0043067 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 2.0e-14 84.3 79 58.2
Oeu037561.1 Olea europaea HOM05D006024 ORTHO05D007505 3.4e-14 83.6 51 76.5
BcaC09g49021 Brassica carinata HOM05D006024 ORTHO05D007505 5.8e-14 82.8 80 58.8


User provided reference genes

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